BDGP Sequence Production Resources |
Search the DGRC for RH71704
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 717 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | EloC-RA |
Protein status: | RH71704.pep: gold |
Preliminary Size: | 1222 |
Sequenced Size: | 561 |
Gene | Date | Evidence |
---|---|---|
CG9291 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9291 | 2002-04-26 | Blastp of sequenced clone |
CG9291 | 2003-01-01 | Sim4 clustering to Release 3 |
Elongin-C | 2008-04-29 | Release 5.5 accounting |
Elongin-C | 2008-08-15 | Release 5.9 accounting |
Elongin-C | 2008-12-18 | 5.12 accounting |
561 bp (561 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113630
> RH71704.complete GATTGATTGTGTGTGTGTGTGCGTACCGTGCGGCGGTGTGTGGGTGTCAC TGACTGATATTTGACAAATGATAGCAATGGACGAGCAGCGCGGCGACAAG ATCTACGGCGGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTC CTCGGACGGCCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCG GCACAATCCGGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAG GCCAACGAGGTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGT CTGCATGTACTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAA TACCCGAATTCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCG GCTAATTTCCTAGACTGCTAAAGAAAATAATATTGGTTAATTTGAATTTA CATTATTTACAAGTGAACGAAGAAGGGCCAGACTGCGTAAAGCTTAATTT GCCCATGTTAATTTGGTAATAAAACGAGAAGATTGTCCCTGCGAGAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Elongin-C-RA | 691 | Elongin-C-RA | 100..651 | 2..553 | 2745 | 99.8 | Plus |
Elongin-C-RB | 675 | Elongin-C-RB | 151..636 | 68..553 | 2415 | 99.7 | Plus |
Elongin-C-RB | 675 | Elongin-C-RB | 7..72 | 2..67 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15332279..15332544 | 545..280 | 1330 | 100 | Minus |
chr2R | 21145070 | chr2R | 15333093..15333304 | 279..68 | 1060 | 100 | Minus |
chr2R | 21145070 | chr2R | 15333383..15333448 | 67..2 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19445106..19445379 | 553..280 | 1355 | 99.6 | Minus |
2R | 25286936 | 2R | 19445928..19446139 | 279..68 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 19446218..19446283 | 67..2 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19446305..19446578 | 553..280 | 1355 | 99.6 | Minus |
2R | 25260384 | 2R | 19447127..19447338 | 279..68 | 1060 | 100 | Minus |
2R | 25260384 | 2R | 19447417..19447482 | 67..2 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord2 | 7650 | accord2 QBERT 7650bp | 3074..3107 | 545..512 | 107 | 79.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15332279..15332544 | 280..545 | 100 | <- | Minus |
chr2R | 15333093..15333304 | 68..279 | 100 | <- | Minus |
chr2R | 15333383..15333448 | 1..67 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RB | 1..354 | 68..421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RB | 1..354 | 68..421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RA | 1..354 | 68..421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RB | 1..354 | 68..421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
EloC-RA | 1..354 | 68..421 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RA | 1..537 | 9..545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RA | 8..553 | 1..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RA | 2..547 | 1..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elongin-C-RA | 1..537 | 9..545 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
EloC-RA | 2..547 | 1..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19445114..19445379 | 280..545 | 100 | <- | Minus |
2R | 19445928..19446139 | 68..279 | 100 | <- | Minus |
2R | 19446218..19446283 | 1..67 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19445114..19445379 | 280..545 | 100 | <- | Minus |
2R | 19445928..19446139 | 68..279 | 100 | <- | Minus |
2R | 19446218..19446283 | 1..67 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19445114..19445379 | 280..545 | 100 | <- | Minus |
2R | 19445928..19446139 | 68..279 | 100 | <- | Minus |
2R | 19446218..19446283 | 1..67 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15332619..15332884 | 280..545 | 100 | <- | Minus |
arm_2R | 15333723..15333788 | 1..67 | 98 | Minus | |
arm_2R | 15333433..15333644 | 68..279 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19446313..19446578 | 280..545 | 100 | <- | Minus |
2R | 19447127..19447338 | 68..279 | 100 | <- | Minus |
2R | 19447417..19447482 | 1..67 | 98 | Minus |
Translation from 67 to 420
> RH71704.pep MIAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAM LSGPGQFAENEANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI APEIALELLMAANFLDC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12606-PA | 117 | GF12606-PA | 1..117 | 1..117 | 629 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20907-PA | 117 | GG20907-PA | 1..117 | 1..117 | 629 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20204-PA | 117 | GH20204-PA | 1..117 | 1..117 | 619 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
EloC-PB | 117 | CG9291-PB | 1..117 | 1..117 | 614 | 100 | Plus |
EloC-PA | 117 | CG9291-PA | 1..117 | 1..117 | 614 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20730-PA | 117 | GI20730-PA | 1..117 | 1..117 | 623 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16726-PA | 117 | GL16726-PA | 1..117 | 1..117 | 619 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27687-PA | 117 | GA27687-PA | 1..117 | 1..117 | 619 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19829-PA | 114 | GM19829-PA | 1..114 | 4..117 | 614 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25320-PA | 117 | GD25320-PA | 1..117 | 1..117 | 629 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20467-PA | 117 | GJ20467-PA | 1..117 | 1..117 | 619 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15707-PA | 114 | GK15707-PA | 1..114 | 4..117 | 605 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Elongin-C-PA | 117 | GE13845-PA | 1..117 | 1..117 | 629 | 100 | Plus |
Translation from 67 to 420
> RH71704.hyp MIAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAM LSGPGQFAENEANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPI APEIALELLMAANFLDC*