BDGP Sequence Production Resources |
Search the DGRC for RH72336
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 723 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vps2-RA |
Protein status: | RH72336.pep: gold |
Preliminary Size: | 771 |
Sequenced Size: | 1176 |
Gene | Date | Evidence |
---|---|---|
CG14542 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14542 | 2003-02-13 | Blastp of sequenced clone |
CG14542 | 2008-04-29 | Release 5.5 accounting |
CG14542 | 2008-08-15 | Release 5.9 accounting |
CG14542 | 2008-12-18 | 5.12 accounting |
1176 bp (1176 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003747
> RH72336.complete GACCCTTCGCTTATTGTTTTGGTTGATGAGTAATCTTTAGGAAACTCCGT CATTCTTCGTAATTAAATCTTGCAGTTAAGATATCCTTAAACATGGACTG GCTATTCGGCAAGAAGATCAGCCCCGATGAGATGCTGCGTAAGAATCAGC GGGCGCTCAACAAAGCGATGCGAGATCTGGACCGCGAGCGGATGAAAATG GAGCAGCAGGAGAAGAAGATTATCGCGGATATCAAGAAGATGGCCAAGGA GGGTCAAATGGATGCCGTGAAGATCATGGCCAAGGATCTGGTGCGCACGC GGCGGTATGCCAAGAAGTTCATGCTGATGAAGGCAAACATCCAGGCGGTG TCCCTCAAAATTCAGACGCTCAAGTCGCAGAACACAATGGCACAGGCCAT GAAAGGTGTCACGAAGGCCATGCAGAACATGAACCGCCAGCTGAATCTCC CGCAAATCCAGAAGATCCTGCAGGACTTCGAGAAACAGTCGGAAATGATG GACATGAAGGAGGAGATGATCAACGATGCCATCGATGACGCCATGGAGGA CGAGGGCGACGAGGAGGAGACGGATGCTGTTGTGTCCCAGGTGCTGGACG AACTGGGTCTGCAATTGGGCGAACAGCTGGGAGACCTTCCTTCCGCCTCC GGTTCCCTTTCCATAGCCGGCGGCGCTGGCGCTCAGAAAGCACAGGCTGT GGCCGCTGGTGGCGTTGGCGGCGGTGGAGCCGCCGGCGGAGGTGGAGCTA GTGGTGGCGGCGCTGGTGGTCCGGGAGCTCCCGGTGGCAGTGGTGCCTCA TCGCCCATGTCCGATGCCGATGCGGATCTTCAGGCGCGCCTGGATAAGCT GCGCAAGGATTGAGCCGCTACTAAGAACCACTGCCTGTCCACTTTATGTA AGAGCCACCACCCGTTTGTATCTCCCAGAAGCGAATTTTATATTAAAGAG AATGCTTGTGATTTTCGTTCCCTGCGTGTTTGAAAAATCGATGAGTAATT AGCATTTACAAGCTATAATGGAAAGAACTGGGTAGTGCTGCAATCGCACA GCCTAGCTACAAACAAATTCGCAATACTTGTTACTTTAGAGCTATACAAT ATTCGGTATTTTAAAAGATATGTACGTTTCATGCCTGTCTTCAATAAAAT AAGAAAAAGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14542-RA | 1376 | CG14542-RA | 129..1289 | 2..1162 | 5790 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21876276..21876576 | 406..706 | 100 | == | Plus |
chr3R | 21875811..21876215 | 1..405 | 99 | -> | Plus |
chr3R | 21876666..21877030 | 796..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14542-RA | 1..771 | 93..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps2-RA | 1..771 | 93..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps2-RA | 1..771 | 93..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14542-RA | 1..771 | 93..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps2-RA | 1..771 | 93..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14542-RA | 2..1160 | 2..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps2-RA | 2..1160 | 2..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vps2-RA | 5..1164 | 1..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14542-RA | 2..1160 | 2..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps2-RA | 5..1164 | 1..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26052825..26053229 | 1..405 | 99 | -> | Plus |
3R | 26053290..26054044 | 406..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26052825..26053229 | 1..405 | 99 | -> | Plus |
3R | 26053290..26054044 | 406..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26052825..26053229 | 1..405 | 99 | -> | Plus |
3R | 26053290..26054044 | 406..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21878547..21878951 | 1..405 | 99 | -> | Plus |
arm_3R | 21879012..21879766 | 406..1160 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25793656..25794060 | 1..405 | 99 | -> | Plus |
3R | 25794121..25794875 | 406..1160 | 99 | Plus |
Translation from 92 to 862
> RH72336.pep MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL DKLRKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16804-PA | 252 | GF16804-PA | 1..252 | 1..256 | 935 | 91.4 | Plus |
Dana\GF23969-PA | 212 | GF23969-PA | 2..195 | 1..193 | 272 | 36.1 | Plus |
Dana\GF10809-PA | 203 | GF10809-PA | 13..189 | 22..201 | 179 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11461-PA | 256 | GG11461-PA | 1..256 | 1..256 | 1283 | 99.6 | Plus |
Dere\GG15261-PA | 212 | GG15261-PA | 2..188 | 1..188 | 265 | 36.7 | Plus |
Dere\GG15729-PA | 203 | GG15729-PA | 43..189 | 52..201 | 158 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19462-PA | 259 | GH19462-PA | 1..259 | 1..256 | 959 | 89.6 | Plus |
Dgri\GH16177-PA | 212 | GH16177-PA | 2..188 | 1..188 | 258 | 37.2 | Plus |
Dgri\GH17196-PA | 203 | GH17196-PA | 45..187 | 54..201 | 166 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps2-PA | 256 | CG14542-PA | 1..256 | 1..256 | 1275 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..200 | 4..199 | 349 | 34.7 | Plus |
Chmp1-PB | 203 | CG4108-PB | 6..189 | 15..201 | 237 | 28.3 | Plus |
Chmp1-PA | 203 | CG4108-PA | 6..189 | 15..201 | 237 | 28.3 | Plus |
Vps24-PB | 223 | CG9779-PB | 3..181 | 4..183 | 195 | 25.8 | Plus |
Vps24-PA | 223 | CG9779-PA | 3..181 | 4..183 | 195 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24696-PA | 253 | GI24696-PA | 1..253 | 1..256 | 972 | 90.2 | Plus |
Dmoj\GI13330-PA | 212 | GI13330-PA | 2..195 | 1..193 | 278 | 36.1 | Plus |
Dmoj\GI11307-PA | 203 | GI11307-PA | 6..187 | 15..201 | 167 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21825-PA | 256 | GL21825-PA | 1..256 | 1..256 | 988 | 91.8 | Plus |
Dper\GL22617-PA | 212 | GL22617-PA | 2..188 | 1..188 | 273 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13067-PA | 256 | GA13067-PA | 1..256 | 1..256 | 986 | 92.2 | Plus |
Dpse\GA18306-PA | 212 | GA18306-PA | 2..188 | 1..188 | 273 | 37.2 | Plus |
Dpse\GA17963-PA | 204 | GA17963-PA | 43..188 | 52..201 | 160 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10303-PA | 256 | GM10303-PA | 1..256 | 1..256 | 1275 | 98.8 | Plus |
Dsec\GM14695-PA | 212 | GM14695-PA | 2..188 | 1..188 | 261 | 36.2 | Plus |
Dsec\GM14926-PA | 203 | GM14926-PA | 43..189 | 52..201 | 158 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21266-PA | 256 | GD21266-PA | 1..256 | 1..256 | 1277 | 99.2 | Plus |
Dsim\GD12332-PA | 203 | GD12332-PA | 43..189 | 52..201 | 158 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23912-PA | 251 | GJ23912-PA | 1..251 | 1..256 | 930 | 89.8 | Plus |
Dvir\GJ13157-PA | 212 | GJ13157-PA | 2..200 | 1..199 | 324 | 34.7 | Plus |
Dvir\GJ14099-PA | 203 | GJ14099-PA | 43..187 | 52..201 | 160 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14462-PA | 251 | GK14462-PA | 1..251 | 1..256 | 969 | 90.2 | Plus |
Dwil\GK20320-PA | 213 | GK20320-PA | 2..204 | 1..204 | 355 | 37.3 | Plus |
Dwil\GK10775-PA | 203 | GK10775-PA | 43..189 | 52..201 | 157 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23653-PA | 256 | GE23653-PA | 1..256 | 1..256 | 1271 | 98.4 | Plus |
Dyak\GE21483-PA | 212 | GE21483-PA | 2..184 | 1..183 | 256 | 35 | Plus |
Dyak\Chmp1-PA | 203 | GE22062-PA | 43..189 | 52..201 | 163 | 28 | Plus |
Translation from 92 to 862
> RH72336.hyp MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL DKLRKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps2-PA | 256 | CG14542-PA | 1..256 | 1..256 | 1275 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..200 | 4..199 | 349 | 34.7 | Plus |
Chmp1-PB | 203 | CG4108-PB | 6..189 | 15..201 | 237 | 28.3 | Plus |
Chmp1-PA | 203 | CG4108-PA | 6..189 | 15..201 | 237 | 28.3 | Plus |
Vps24-PA | 223 | CG9779-PA | 3..181 | 4..183 | 195 | 25.8 | Plus |