Clone RH72421 Report

Search the DGRC for RH72421

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:724
Well:21
Vector:pFlc-1
Associated Gene/Transcriptfrtz-RA
Protein status:RH72421.pep: gold
Preliminary Size:2856
Sequenced Size:3629

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17657 2002-01-01 Sim4 clustering to Release 2
CG17657 2003-01-01 Sim4 clustering to Release 3
CG17657 2003-02-21 Blastp of sequenced clone
frtz 2008-04-29 Release 5.5 accounting
frtz 2008-08-15 Release 5.9 accounting
frtz 2008-12-18 5.12 accounting

Clone Sequence Records

RH72421.complete Sequence

3629 bp (3629 high quality bases) assembled on 2003-02-21

GenBank Submission: BT004832

> RH72421.complete
AGAACAAAGTGCCGTCTCTAGTAACGTAAGCAGTGTTTCGAGCAACAAGT
TTATTTTATTTTCATAAACAAAGTTTGTTTAAAGCGAAAAATCCTGGCCA
AAGTGCTAATTCGTTGGCTATTCCGCGAGCAACCTTGATAACGAGTCGCA
GAGCAGTCATAGAGCAGCGCAATTAACCCCGATACAAAGCAATCAGTGCA
ATTGGAGCAGCTTGAAAGGCACACGCCAACAAATCGAGATCGAGCTGATC
GAGTCGCGTTGACACCCATCATTCCGCCATGCAAATCGATGCACTGGAGG
CCTGAATATGCTGCTCAGCGAGACCCATTTCTGGACCACGTTGCGCGAGG
ATGTGGTGCGGATCAAGAGCCAGGACCTGGGCGCCTTTCGCTACCTCAGG
CAGCGCGACAAGGAGCAGGAGCAGCAGGACCTCGCCTGCCTGGCCAAGCG
AGACTATACGGAGCGTCGCAATGGACTGGCCGTGCTGAAGAACTCTGGTC
GCAAGTCCACCGGCCGCTTGAAGGACAACCTCAAGAAGCTGGAGGACCTG
CTGCGCCAGCACAGGATCATCCACTCCGAGTGGCAGGACGCGGCGCAGGT
GCTGCTCCTCTTCTCACACGGCCTGATCGCCCACATCTGCGTGGACATCT
ACACGGGCGACATTCTGCGCATGGTCTTCGAGAAGTACCTGGTGGGCAAG
CTCGCCTCCGAGGTCATTACGGATGCTTTTTTCACCCGTTCCCACATCGT
CTTGGCCTACAATACCAACCAGCTGACGGTGGTGCATCTGCAGAGGCCTA
ATGCTCGCTCCCAGGGACCGGAGAAGATCGCCAATATGGATCCGCGCATC
TTCCACGTGATCATACCGGGCGCCACAGAGCGCAAACTATCCCGCCACCT
CACAGTTAACGCCAGCTTCGATCTGTTCGTGGTTTGGACGCAGTCCTCGC
AGAACGAGGTGTATCCCTGGAGGCCAACGATAAGGGACCAAGATCGTGCC
AACATACATGTGTTCAAGATCAAGGGCTTGCAGCTGGAATCGATTGCCTA
TTGCTGGTCGGAGAACGATCCGCTGTGCGTGGACTTCCTGCGAAGCAGCG
AGAGCCAGATCATCACCCTGGAGCAGAAGGTTTCCCGCAAGGGCGACATA
AGCGCAGAAATCTGCTCCTACGAACTGGCCGCCGGCAAGATGCAGCGCAC
CGCCATTACCTCCATTCCAATGGGCGCCCAGATCTGCTCCTTTGCCTTCA
GCCCCGACCAGGAGAAGCTCTTCCTGGGCAGCGTCGATCGCAATATCTGC
CTGCACGACCTGGTCCAGCAGTCGACAAAGTACGCCAACCAGATTGAGAT
CGTGCCCAATCAGTGCGCCTGGCACTGCGACTCCGCCATGCTTTGCGTGG
CCAACGAGCGATCGGTGCTGCAGTGCTTCGACCTGGCGCTGGCCACCATT
GGCCATCAGCTGGTTAGCGAGAATGTGACGCCGTCCAGCTTGCTGGATCT
GTCGCACTACTTCGTGGCCCAGCCAACGCTGCTGAGTGTCGCCTTCAGCC
GAAAGCCAGATTTGTCCACTTTTAAGCACACCTACGCCCAGACGGATTGC
CTGCTGCTGCTGGTGTACGAACAGGGACCTTTGGCCTGCATGCGCATCTT
TGGCGGCACCGGAATGCGCGGCGACATCCACAATTCCGGACTCACTGCGG
ACGTCATTGCGGACAAGTATCTGCGGCTGCAGCAGCCGGACAGAGCGGTC
AATGTCCTGGCCGCCCTCAACTGGGAGACCTACGGAGCCATGTGCCTGAT
TACGCTGCACAAGATAGCCAACTATGTGTTCTTCGGCGGTGACCAGCGAC
GACCTCGCATCGAGCTGATGGCCAGAGCGTTGAAGACATTCGCCCACACG
CTTTCCGAGGAGACGAAGGACGAGTTCAGCGATCAGGTGTACGATCTGAA
GCGCCGCTTCTGCTTCTATCTGCTGCGCAAAAACCTCTTCGCTGAGGCCT
TCGAAATCGCCCAGGATGTGGCCGACTATGACATCTTCATGGACCTGTAC
AACCTAACCAAGTGCATCTCAAGCCTGAGTGAGTTCGCCCAGGTGGCCTT
CAGTCAGGCAGCTGCCATAATCCACGAGGAAGATCGCGCCAACGGCAATC
TCAGCCTGACCTGTGACCTGCGCTCGGAGTCGGCCTGTTCGCTGTCCACC
TGCTCGGACATGTTGCGCGGTCAGGGAGCAGGAACTGCCCCCGAAACCGG
ACTAGGCGCAAGTCAGCCACAAAGCCAGCAGGTCCTGAAGAACTATGTGC
CACCGCTGCCCTCGTTCAAGTCGAAGGTATTCAACGCTGAGATGATCAAG
ATCAACATACCGAAACCGGAACTGAGGCCGCCCTTGCCGAAGGTTTCAAT
AGCGCCGCCAACATCTTCGCTGGCGAGTCTAACCCTGAAGTCCAACAGTA
GTCTGCAGCAGGCGCCCGCAAAGAGTCTGCATCCAAATGGCAATTTGTGG
TCCCAGGACGTGCCGGATCAGACGGTGGGTCTGCCTATGGCTAGTAGTCC
ACTTCCTCGTCTTCCGCCTTCAAACATTCCAGATCAGAGCGCCCAGCTGG
GTCAGTTCAGCACGATGCCAGCTTCGCCTCCGCCGACAGGGTCCTATCAG
CCCAAGTTTTATCAACATCCGCTTGTCTCTGGCAATATTCCCGCCATGCT
GCCATCGCTCACCAGCGAGGACTACCAGAAGCGCCTGCTGCAAAAGAAAC
CCACCGCATCCATATTGTCCAACCCGGCGAATCCAGCACCCACCAACGGA
GAAGCACCCGCCACGCCCGCAAAGTCACAAACGGCCGAAAAGAACAAAGT
CAAGTTCTCGGATACAATTCAAGTGGCGGTGGTGCCAGAAATTCCTCGCA
AGGAAAAGCCAATGCCACCCAAGAGAAATGGTTACTCCAGGCCCGCTGCG
CGACATCTGACAAATCCTAAAAAGGAGCTCGCAGACAGCCTGCCGCTCTG
TCATCCGAACGACGAGTATCTAAAGGATTTCAACCCCATTACGACCAATG
TGACTAAGCCGCCCATCCGACGACGCGAGGAAGAACCCAAGAGCAGCAGC
AAGGGCGGCAACTCCTCCTCCTCCTCGTCGTCCATCAAGGTGGTCCACTT
CGGCGTGGTCTAATAATTCATAGTGCAATTCCCAGGCGTACACCACACAA
CGGTTAAGCGCTGCGTCTTCCAATCGTTTGTAACTATTGTAGTAGGCTGC
TCCTTCTACCCTCTTCCTTTACTCTTAGTCATACATACCTAATTATACAT
AGCCAATCTAGTCATAAGCTTATACACTCATACACCCATCCTTAACATAC
AAATATTATCGAGAAACTTATCGACTAATCGACTCGCCACTCTGCAGAGA
GCGCGGCAGTCAGTCGCTGTTGAACCAAGCTAAAGGACAGATCAAAAATA
AAAGAGACACGTGAAATTGTATTAGAATATTAACTTCTGTAAACGGCGGC
TAAACTATTGCCGTCCCAGTTAGTGCAAAGCTTTAAATAGGAAAGTTTTA
CTCATAGGTTCTCTATACTCTTTACACAGGTTACTCATTAAAGCTAAGCA
TTAAATGTTTGCCAAAAAAAAAAAAAAAA

RH72421.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
frtz-RA 3715 frtz-RA 49..3662 3..3616 18070 100 Plus
frtz.c 3567 frtz.c 723..3567 772..3616 14225 100 Plus
frtz.a 3599 frtz.a 1..2473 3..2475 12365 100 Plus
frtz.a 3599 frtz.a 2473..3599 2490..3616 5635 100 Plus
frtz.c 3567 frtz.c 1..725 3..727 3625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1713029..1713980 1977..1026 4655 99.3 Minus
chr2L 23010047 chr2L 1715001..1715723 725..3 3525 99.2 Minus
chr2L 23010047 chr2L 1711163..1711728 3613..3048 2815 99.8 Minus
chr2L 23010047 chr2L 1712457..1712970 2490..1977 2450 98.4 Minus
chr2L 23010047 chr2L 1712005..1712404 2888..2489 1955 99.2 Minus
chr2L 23010047 chr2L 1714035..1714336 1026..725 1510 100 Minus
chr3R 27901430 chr3R 893705..893973 3505..3237 1345 100 Minus
chr3R 27901430 chr3R 898899..899167 3504..3236 1345 100 Minus
chr3R 27901430 chr3R 8968215..8968489 3511..3237 1345 99.3 Minus
chr3L 24539361 chr3L 20201835..20202106 3508..3237 1345 99.6 Minus
chr2L 23010047 chr2L 1801097..1801364 3504..3237 1340 100 Minus
chr2L 23010047 chr2L 20270589..20270856 3504..3237 1340 100 Minus
chr3R 27901430 chr3R 8973475..8973742 3504..3237 1340 100 Minus
chrX 22417052 chrX 16387660..16387927 3504..3237 1340 100 Minus
chr2L 23010047 chr2L 1806350..1806616 3504..3238 1335 100 Minus
chr3L 24539361 chr3L 20207092..20207361 3504..3235 1335 99.6 Minus
chrX 22417052 chrX 9467561..9467827 3238..3504 1335 100 Plus
chrX 22417052 chrX 13359786..13360052 3237..3503 1335 100 Plus
chrX 22417052 chrX 16382408..16382674 3503..3237 1335 100 Minus
chrX 22417052 chrX 13354535..13354800 3239..3504 1330 100 Plus
chr2L 23010047 chr2L 20280976..20281240 3504..3240 1325 100 Minus
chr3R 27901430 chr3R 6057554..6057820 3503..3237 1320 99.6 Minus
chr3R 27901430 chr3R 6062806..6063072 3504..3238 1320 99.6 Minus
chr3R 27901430 chr3R 37099..37365 3237..3504 1290 99.6 Plus
chr3LHet 2555433 chr3LHet 566904..567170 3504..3237 1290 99.6 Minus
chr3R 27901430 chr3R 31848..32113 3238..3504 1285 99.6 Plus
chr3LHet 2555433 chr3LHet 572123..572388 3504..3238 1285 99.6 Minus
chrYHet 347003 chrYHet 154372..154638 3504..3237 1245 98.5 Minus
chrU 10048995 chrU 7927475..7927746 3237..3504 1205 97.1 Plus
chrU 10048995 chrU 7388122..7388386 3504..3238 1180 97 Minus
chr3L 24539361 chr3L 20326006..20326296 3232..3509 1105 93.5 Plus
chrU 10048995 chrU 8319390..8319669 3504..3238 1035 92.9 Minus
chrU 10048995 chrU 9658107..9658383 3504..3238 1035 93.2 Minus
chr3L 24539361 chr3L 24377008..24377288 3504..3237 1010 92.2 Minus
chr3L 24539361 chr3L 24381860..24382140 3504..3237 1010 92.2 Minus
chrU 10048995 chrU 8069684..8069966 3237..3506 1005 91.9 Plus
chrU 10048995 chrU 4275070..4275349 3504..3238 975 91.5 Minus
chr2R 21145070 chr2R 2367128..2367408 3237..3504 950 90.8 Plus
chr3LHet 2555433 chr3LHet 1662596..1662875 3504..3238 945 90.7 Minus
chrU 10048995 chrU 9947523..9947803 3504..3237 935 90.4 Minus
chr3L 24539361 chr3L 23549089..23549368 3504..3238 930 90.4 Minus
chr2L 23010047 chr2L 22860303..22860594 3506..3233 925 90.1 Minus
chrU 10048995 chrU 9318643..9318901 3238..3483 885 91.2 Plus
chrU 10048995 chrU 8008664..8008937 3237..3505 875 89.8 Plus
chrU 10048995 chrU 9618133..9618406 3505..3237 875 89.8 Minus
chr2R 21145070 chr2R 70900..71189 3238..3504 840 88.3 Plus
chr2R 21145070 chr2R 2356909..2357197 3238..3504 835 88.3 Plus
chrU 10048995 chrU 5051763..5052053 3237..3504 830 88 Plus
chr2L 23010047 chr2L 20207606..20207843 3276..3504 825 91.6 Plus
chr2L 23010047 chr2L 1711789..1711948 3047..2888 800 100 Minus
chr3LHet 2555433 chr3LHet 1657517..1657737 3443..3237 755 90.5 Minus
chr3RHet 2517486 chr3RHet 791566..791867 3504..3229 745 86.1 Minus
chr3RHet 2517486 chr3RHet 787706..787886 3443..3273 645 91.7 Minus
chrU 10048995 chrU 9714247..9714383 3366..3504 570 95.7 Plus
chr3RHet 2517486 chr3RHet 787887..787936 3286..3237 235 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:38:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1713167..1714118 1977..1026 4760 100 Minus
2L 23513712 2L 1715139..1715861 725..3 3615 100 Minus
2L 23513712 2L 1711299..1711867 3616..3048 2845 100 Minus
2L 23513712 2L 1712596..1713109 2490..1977 2570 100 Minus
2L 23513712 2L 1712144..1712543 2888..2489 2000 100 Minus
2L 23513712 2L 1714173..1714474 1026..725 1510 100 Minus
3L 28110227 3L 20217913..20218182 3504..3235 1350 100 Minus
3L 28110227 3L 20212656..20212927 3508..3237 1345 99.6 Minus
3R 32079331 3R 5068035..5068303 3505..3237 1345 100 Minus
3R 32079331 3R 5073229..5073497 3504..3236 1345 100 Minus
3R 32079331 3R 13143081..13143355 3511..3237 1345 99.3 Minus
2L 23513712 2L 1801273..1801540 3504..3237 1340 100 Minus
2L 23513712 2L 20272167..20272434 3504..3237 1340 100 Minus
3R 32079331 3R 13148341..13148608 3504..3237 1340 100 Minus
X 23542271 X 13463699..13463966 3237..3504 1340 100 Plus
X 23542271 X 13468952..13469219 3237..3504 1340 100 Plus
X 23542271 X 16492701..16492968 3504..3237 1340 100 Minus
X 23542271 X 16497954..16498221 3504..3237 1340 100 Minus
2L 23513712 2L 1806526..1806792 3504..3238 1335 100 Minus
2L 23513712 2L 20282554..20282820 3504..3238 1335 100 Minus
X 23542271 X 9575846..9576112 3238..3504 1335 100 Plus
3R 32079331 3R 10231837..10232104 3504..3237 1325 99.6 Minus
3R 32079331 3R 10237090..10237356 3504..3238 1320 99.6 Minus
3L 28110227 3L 25081449..25081715 3504..3237 1290 99.6 Minus
3R 32079331 3R 4211377..4211643 3237..3504 1290 99.6 Plus
3L 28110227 3L 25086668..25086933 3504..3238 1285 99.6 Minus
3R 32079331 3R 4206126..4206391 3238..3504 1285 99.6 Plus
Y 3667352 Y 670299..670565 3504..3237 1245 98.5 Minus
U 3151297 U 1305746..1306017 3237..3504 1205 97.1 Plus
Y 3667352 Y 2405108..2405372 3504..3238 1180 97 Minus
U 3151297 U 2082994..2083258 3504..3238 1180 97 Minus
3L 28110227 3L 20336931..20337221 3232..3509 1105 93.5 Plus
2R 25286936 2R 3681954..3682234 3237..3504 1040 92.9 Plus
U 3151297 U 1869905..1870181 3504..3238 1035 93.2 Minus
2R 25286936 2R 3687269..3687551 3237..3506 1035 92.6 Plus
Ymm 880023 Ymm 547935..548214 3504..3238 1035 92.9 Minus
3L 28110227 3L 24388108..24388388 3504..3237 1010 92.2 Minus
U 3151297 U 1867988..1868270 3237..3506 1005 91.9 Plus
3L 28110227 3L 24392960..24393240 3504..3237 995 91.8 Minus
U 3151297 U 1637955..1638234 3504..3238 975 91.5 Minus
2R 25286936 2R 6479960..6480240 3237..3504 950 90.8 Plus
3L 28110227 3L 26315278..26315557 3504..3238 945 90.7 Minus
U 3151297 U 1736764..1737044 3504..3237 935 90.4 Minus
3L 28110227 3L 23560175..23560454 3504..3238 930 90.4 Minus
2L 23513712 2L 22969055..22969346 3506..3233 925 90.1 Minus
2CEN 225573 2CEN 119487..119745 3238..3483 885 91.2 Plus
U 3151297 U 1871395..1871668 3505..3237 875 89.8 Minus
XYmm 216041 XYmm 168812..169085 3237..3505 875 89.8 Plus
2R 25286936 2R 4183381..4183670 3238..3504 840 88.3 Plus
2R 25286936 2R 6469740..6470028 3238..3504 835 88.3 Plus
Y 3667352 Y 337588..337878 3504..3237 830 88 Minus
Y 3667352 Y 348822..349112 3504..3237 830 88 Minus
2L 23513712 2L 20209205..20209442 3276..3504 825 91.6 Plus
2L 23513712 2L 1711928..1712087 3047..2888 800 100 Minus
3L 28110227 3L 26310199..26310419 3443..3237 755 90.5 Minus
3R 32079331 3R 2089038..2089339 3504..3229 745 86.1 Minus
3R 32079331 3R 2085178..2085358 3443..3273 645 91.7 Minus
U 3151297 U 2199139..2199275 3366..3504 570 95.7 Plus
3R 32079331 3R 2085359..2085408 3286..3237 235 98 Minus
Y 3667352 Y 342790..342867 3504..3426 225 88.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1713167..1714118 1977..1026 4760 100 Minus
2L 23513712 2L 1715139..1715861 725..3 3615 100 Minus
2L 23513712 2L 1711299..1711867 3616..3048 2845 100 Minus
2L 23513712 2L 1712596..1713109 2490..1977 2570 100 Minus
2L 23513712 2L 1712144..1712543 2888..2489 2000 100 Minus
2L 23513712 2L 1714173..1714474 1026..725 1510 100 Minus
3L 28103327 3L 20211013..20211282 3504..3235 1350 100 Minus
3R 31820162 3R 4814060..4814328 3504..3236 1345 100 Minus
3R 31820162 3R 4808866..4809134 3505..3237 1345 100 Minus
3R 31820162 3R 12883912..12884186 3511..3237 1345 99.2 Minus
3L 28103327 3L 20205756..20206027 3508..3237 1345 99.6 Minus
2L 23513712 2L 20272167..20272434 3504..3237 1340 100 Minus
2L 23513712 2L 1801273..1801540 3504..3237 1340 100 Minus
3R 31820162 3R 12889172..12889439 3504..3237 1340 100 Minus
X 23527363 X 13477050..13477317 3237..3504 1340 100 Plus
X 23527363 X 13471797..13472064 3237..3504 1340 100 Plus
X 23527363 X 16506052..16506319 3504..3237 1340 100 Minus
X 23527363 X 16500799..16501066 3504..3237 1340 100 Minus
Unimproved_211000022225910_73_630 557 Unimproved_211000022225910_73_630 91..358 3504..3237 1340 100 Minus
2L 23513712 2L 20282554..20282820 3504..3238 1335 100 Minus
2L 23513712 2L 1806526..1806792 3504..3238 1335 100 Minus
X 23527363 X 9583944..9584210 3238..3504 1335 100 Plus
3R 31820162 3R 9972668..9972935 3504..3237 1325 99.6 Minus
3R 31820162 3R 9977921..9978187 3504..3238 1320 99.6 Minus
3R 31820162 3R 3952208..3952474 3237..3504 1300 99.6 Plus
3L 28103327 3L 25074549..25074815 3504..3237 1300 99.6 Minus
3R 31820162 3R 3946957..3947222 3238..3504 1295 99.6 Plus
3L 28103327 3L 25079768..25080033 3504..3238 1295 99.6 Minus
Y 3410481 Y 648113..648379 3504..3237 1255 98.5 Minus
Y 3410481 Y 2504217..2504481 3504..3238 1190 97 Minus
3L 28103327 3L 20330089..20330321 3276..3509 1085 98.2 Plus
2R 25260384 2R 3688521..3688750 3276..3506 1040 97.4 Plus
2R 25260384 2R 3683206..3683433 3276..3504 1030 97.3 Plus
3L 28103327 3L 24381208..24381435 3504..3276 1015 96.9 Minus
3L 28103327 3L 24386060..24386287 3504..3276 1000 96.5 Minus
3L 28103327 3L 26308378..26308605 3504..3276 955 95.1 Minus
2R 25260384 2R 6481212..6481439 3276..3504 940 94.7 Plus
3L 28103327 3L 23553275..23553502 3504..3276 925 94.3 Minus
2L 23513712 2L 22969055..22969289 3506..3276 920 94 Minus
Unimproved_211000022219645_181_814 633 Unimproved_211000022219645_181_814 1..180 3326..3505 870 98.8 Plus
2L 23513712 2L 1711928..1712087 3047..2888 800 100 Minus
Unimproved_211000022251065_53_586 533 Unimproved_211000022251065_53_586 1..203 3301..3504 785 93.1 Plus
3L 28103327 3L 26303299..26303466 3443..3276 750 96.4 Minus
2L 23513712 2L 20209284..20209442 3345..3504 640 94.3 Plus
2R 25260384 2R 4184711..4184869 3345..3504 640 94.3 Plus
2R 25260384 2R 6471069..6471227 3345..3504 640 94.3 Plus
Y 3410481 Y 326636..326794 3504..3345 640 94.3 Minus
Y 3410481 Y 315402..315560 3504..3345 625 93.7 Minus
3R 31820162 3R 1886664..1886777 3459..3345 460 94.7 Minus
3R 31820162 3R 1882756..1882854 3443..3345 435 95.9 Minus
3R 31820162 3R 1882865..1882936 3344..3273 345 98.6 Minus
2L 23513712 2L 20209205..20209273 3276..3344 330 98.5 Plus
2R 25260384 2R 4184632..4184700 3276..3344 330 98.5 Plus
2R 25260384 2R 6470990..6471058 3276..3344 330 98.5 Plus
Y 3410481 Y 326805..326873 3344..3276 330 98.5 Minus
Y 3410481 Y 315571..315639 3344..3276 330 98.5 Minus
3R 31820162 3R 1886788..1886856 3344..3276 315 97.1 Minus
3L 28103327 3L 20330031..20330100 3232..3301 290 94.2 Plus
2L 23513712 2L 22969278..22969346 3301..3233 285 94.2 Minus
2R 25260384 2R 3683153..3683217 3237..3301 280 95.3 Plus
2R 25260384 2R 6481159..6481223 3237..3301 280 95.3 Plus
Y 3410481 Y 315628..315692 3301..3237 280 95.3 Minus
3R 31820162 3R 1886845..1886917 3301..3229 275 91.7 Minus
3L 28103327 3L 23553491..23553554 3301..3238 275 95.3 Minus
2R 25260384 2R 4184580..4184643 3238..3301 275 95.3 Plus
3L 28103327 3L 26303455..26303519 3301..3237 265 93.8 Minus
3L 28103327 3L 24386276..24386340 3301..3237 265 93.8 Minus
3L 28103327 3L 24381424..24381488 3301..3237 265 93.8 Minus
2R 25260384 2R 3688468..3688532 3237..3301 265 93.8 Plus
Y 3410481 Y 326862..326926 3301..3237 265 93.8 Minus
3L 28103327 3L 26308594..26308657 3301..3238 260 93.7 Minus
3R 31820162 3R 1882922..1882986 3301..3237 250 92.3 Minus
Y 3410481 Y 320604..320681 3504..3426 235 88.6 Minus
2R 25260384 2R 6470939..6471001 3238..3301 205 90.6 Plus
3L 28103327 3L 26303263..26303298 3504..3469 165 97.2 Minus
3R 31820162 3R 1886616..1886656 3504..3464 160 92.6 Minus
Blast to na_te.dros performed 2019-03-16 14:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5252..5519 3237..3504 1340 100 Plus
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 1..271 3238..3508 1328 98.9 Plus

RH72421.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:47:26 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1711539..1711728 3048..3237 99 <- Minus
chr2L 1711789..1711948 2888..3047 100 <- Minus
chr2L 1712006..1712403 2490..2887 99 <- Minus
chr2L 1712458..1712969 1978..2489 98 <- Minus
chr2L 1713029..1713979 1027..1977 99 <- Minus
chr2L 1714035..1714335 726..1026 100 <- Minus
chr2L 1715001..1715723 1..725 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:53:50 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..2856 308..3163 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:19 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..2856 308..3163 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:55:31 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..2856 308..3163 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:40 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..2856 308..3163 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:32:32 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..2856 308..3163 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:58 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..3611 3..3613 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:19 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..3611 3..3613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:55:31 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..3601 13..3613 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:40 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..3611 3..3613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:32 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
frtz-RA 1..3601 13..3613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:26 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1711302..1711867 3048..3613 100 <- Minus
2L 1711928..1712087 2888..3047 100 <- Minus
2L 1712145..1712542 2490..2887 100 <- Minus
2L 1712597..1713108 1978..2489 100 <- Minus
2L 1713167..1714117 1027..1977 100 <- Minus
2L 1714173..1714473 726..1026 100 <- Minus
2L 1715139..1715861 1..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:26 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1711302..1711867 3048..3613 100 <- Minus
2L 1711928..1712087 2888..3047 100 <- Minus
2L 1712145..1712542 2490..2887 100 <- Minus
2L 1712597..1713108 1978..2489 100 <- Minus
2L 1713167..1714117 1027..1977 100 <- Minus
2L 1714173..1714473 726..1026 100 <- Minus
2L 1715139..1715861 1..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:26 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1711302..1711867 3048..3613 100 <- Minus
2L 1711928..1712087 2888..3047 100 <- Minus
2L 1712145..1712542 2490..2887 100 <- Minus
2L 1712597..1713108 1978..2489 100 <- Minus
2L 1713167..1714117 1027..1977 100 <- Minus
2L 1714173..1714473 726..1026 100 <- Minus
2L 1715139..1715861 1..725 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:55:31 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1711928..1712087 2888..3047 100 <- Minus
arm_2L 1711302..1711867 3048..3613 100 <- Minus
arm_2L 1712145..1712542 2490..2887 100 <- Minus
arm_2L 1712597..1713108 1978..2489 100 <- Minus
arm_2L 1713167..1714117 1027..1977 100 <- Minus
arm_2L 1714173..1714473 726..1026 100 <- Minus
arm_2L 1715139..1715861 1..725 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:05 Download gff for RH72421.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1711302..1711867 3048..3613 100 <- Minus
2L 1711928..1712087 2888..3047 100 <- Minus
2L 1712145..1712542 2490..2887 100 <- Minus
2L 1712597..1713108 1978..2489 100 <- Minus
2L 1713167..1714117 1027..1977 100 <- Minus
2L 1714173..1714473 726..1026 100 <- Minus
2L 1715139..1715861 1..725 99   Minus

RH72421.pep Sequence

Translation from 307 to 3162

> RH72421.pep
MLLSETHFWTTLREDVVRIKSQDLGAFRYLRQRDKEQEQQDLACLAKRDY
TERRNGLAVLKNSGRKSTGRLKDNLKKLEDLLRQHRIIHSEWQDAAQVLL
LFSHGLIAHICVDIYTGDILRMVFEKYLVGKLASEVITDAFFTRSHIVLA
YNTNQLTVVHLQRPNARSQGPEKIANMDPRIFHVIIPGATERKLSRHLTV
NASFDLFVVWTQSSQNEVYPWRPTIRDQDRANIHVFKIKGLQLESIAYCW
SENDPLCVDFLRSSESQIITLEQKVSRKGDISAEICSYELAAGKMQRTAI
TSIPMGAQICSFAFSPDQEKLFLGSVDRNICLHDLVQQSTKYANQIEIVP
NQCAWHCDSAMLCVANERSVLQCFDLALATIGHQLVSENVTPSSLLDLSH
YFVAQPTLLSVAFSRKPDLSTFKHTYAQTDCLLLLVYEQGPLACMRIFGG
TGMRGDIHNSGLTADVIADKYLRLQQPDRAVNVLAALNWETYGAMCLITL
HKIANYVFFGGDQRRPRIELMARALKTFAHTLSEETKDEFSDQVYDLKRR
FCFYLLRKNLFAEAFEIAQDVADYDIFMDLYNLTKCISSLSEFAQVAFSQ
AAAIIHEEDRANGNLSLTCDLRSESACSLSTCSDMLRGQGAGTAPETGLG
ASQPQSQQVLKNYVPPLPSFKSKVFNAEMIKINIPKPELRPPLPKVSIAP
PTSSLASLTLKSNSSLQQAPAKSLHPNGNLWSQDVPDQTVGLPMASSPLP
RLPPSNIPDQSAQLGQFSTMPASPPPTGSYQPKFYQHPLVSGNIPAMLPS
LTSEDYQKRLLQKKPTASILSNPANPAPTNGEAPATPAKSQTAEKNKVKF
SDTIQVAVVPEIPRKEKPMPPKRNGYSRPAARHLTNPKKELADSLPLCHP
NDEYLKDFNPITTNVTKPPIRRREEEPKSSSKGGNSSSSSSSIKVVHFGV
V*

RH72421.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24395-PA 945 GF24395-PA 1..945 1..951 4446 88.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24581-PA 946 GG24581-PA 1..946 1..951 4948 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11480-PA 930 GH11480-PA 1..930 1..951 3763 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
frtz-PB 951 CG17657-PB 1..951 1..951 4934 100 Plus
frtz-PA 951 CG17657-PA 1..951 1..951 4934 100 Plus
frtz-PD 946 CG17657-PD 1..946 1..951 4887 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16975-PA 926 GI16975-PA 1..926 1..951 3724 76.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19344-PA 933 GL19344-PA 1..933 1..951 4273 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14599-PA 933 GA14599-PA 1..933 1..951 4277 86.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16600-PA 949 GM16600-PA 1..949 1..951 5026 98.2 Plus
Dsec\GM13573-PA 532 GM13573-PA 1..532 418..951 2774 97.4 Plus
Dsec\GM13876-PA 110 GM13876-PA 5..106 608..709 502 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17221-PA 921 GJ17221-PA 1..921 1..951 3967 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14937-PA 925 GK14937-PA 1..925 1..951 4010 81 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15489-PA 949 GE15489-PA 1..949 1..951 4943 96.7 Plus

RH72421.hyp Sequence

Translation from 307 to 3162

> RH72421.hyp
MLLSETHFWTTLREDVVRIKSQDLGAFRYLRQRDKEQEQQDLACLAKRDY
TERRNGLAVLKNSGRKSTGRLKDNLKKLEDLLRQHRIIHSEWQDAAQVLL
LFSHGLIAHICVDIYTGDILRMVFEKYLVGKLASEVITDAFFTRSHIVLA
YNTNQLTVVHLQRPNARSQGPEKIANMDPRIFHVIIPGATERKLSRHLTV
NASFDLFVVWTQSSQNEVYPWRPTIRDQDRANIHVFKIKGLQLESIAYCW
SENDPLCVDFLRSSESQIITLEQKVSRKGDISAEICSYELAAGKMQRTAI
TSIPMGAQICSFAFSPDQEKLFLGSVDRNICLHDLVQQSTKYANQIEIVP
NQCAWHCDSAMLCVANERSVLQCFDLALATIGHQLVSENVTPSSLLDLSH
YFVAQPTLLSVAFSRKPDLSTFKHTYAQTDCLLLLVYEQGPLACMRIFGG
TGMRGDIHNSGLTADVIADKYLRLQQPDRAVNVLAALNWETYGAMCLITL
HKIANYVFFGGDQRRPRIELMARALKTFAHTLSEETKDEFSDQVYDLKRR
FCFYLLRKNLFAEAFEIAQDVADYDIFMDLYNLTKCISSLSEFAQVAFSQ
AAAIIHEEDRANGNLSLTCDLRSESACSLSTCSDMLRGQGAGTAPETGLG
ASQPQSQQVLKNYVPPLPSFKSKVFNAEMIKINIPKPELRPPLPKVSIAP
PTSSLASLTLKSNSSLQQAPAKSLHPNGNLWSQDVPDQTVGLPMASSPLP
RLPPSNIPDQSAQLGQFSTMPASPPPTGSYQPKFYQHPLVSGNIPAMLPS
LTSEDYQKRLLQKKPTASILSNPANPAPTNGEAPATPAKSQTAEKNKVKF
SDTIQVAVVPEIPRKEKPMPPKRNGYSRPAARHLTNPKKELADSLPLCHP
NDEYLKDFNPITTNVTKPPIRRREEEPKSSSKGGNSSSSSSSIKVVHFGV
V*

RH72421.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
frtz-PB 951 CG17657-PB 1..951 1..951 4934 100 Plus
frtz-PA 951 CG17657-PA 1..951 1..951 4934 100 Plus
frtz-PD 946 CG17657-PD 1..946 1..951 4887 99.5 Plus