![]() | BDGP Sequence Production Resources |
Search the DGRC for RH72958
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 729 |
Well: | 58 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2076-RA |
Protein status: | RH72958.pep: gold |
Preliminary Size: | 1198 |
Sequenced Size: | 1335 |
Gene | Date | Evidence |
---|---|---|
CG2076 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2076 | 2003-05-20 | Blastp of sequenced clone |
CG2076 | 2008-04-29 | Release 5.5 accounting |
CG2076 | 2008-08-15 | Release 5.9 accounting |
CG2076 | 2008-12-18 | 5.12 accounting |
1335 bp (1335 high quality bases) assembled on 2003-05-20
GenBank Submission: BT009945
> RH72958.complete GACCACTTATCGATAATAAAGCACAAGAGACAGTAAAATATTTAACAATT TCTACGAATCAACAAATTATAAAGCCGCAGTGAGCAATTAAAATCAGTTG GAAGAAACGCTAGTGCCCCACATAGGAATCCGAATCAAGCAGCACTTACC GAAGGACAACCAATTGCCCTCTAACCGAATTTCACCACAACAACACAATG TTGCTGCGTCTAGCACTTTCCACCGCCCGTCCAGCCGGGGCTATCAAGAT CCTGGCCCAGTCTCCGGCCCAGCTGTTCCGGGCCAATGCCAATCCCAATC TGAATCTCTCCACGGTGCGCACCTACGCCCGCAGGGTGGTTCGCACCCGT GAGCCCGTCGAAGAGATGCGTGCTCCCTCGCTGAAGGAGAAACTGATGGG TCCGCCAAGTGCCAATGCATACTCCATGGGCAAGGGCGCTGCCGCCGGAG CAGCCGCCGTGGGATTGGGCGCCCTGTGCTACTACGGCGTGGGATTGGGA AAACAAACCAGCATCGCGGATAATGCCATCATGTGGCCCCAGTTTGTGCG CGATCGTATCCAGAGCACCTATGCCTTTTTCGGTGGCTCTTGCGTTCTCA CCGCGGCCGCAGCAGCAGCCACCTTCCGTTCGCACCGTCTCCTGGAGCTG GCCTCGCGTGGCGGCATCTTGGCGACCATTGCTTCGCTGGCGCTGGTCAT TGGTAGTGGAGCAGTTGCCCGCTCGATTGAGTACCAGCCGGGTCTGGGAG CCAAGCATCTGGCCTGGGCGGTGCACTGCGCCATTCTGGGCGCCGTGATC GCACCCATTTGCTTCATGGGCGGACCGATTTTGACGCGCGCCGCTCTCTA CACGGGCGGCATTGTTGGTGGCTTGTCCACGATCGCCGCGTGTGCACCCA GCGATAAGTTCCTCTACATGGGCGGCCCACTGGCCATTGGCTTGGGCGTG GTGTTCGCCTCCTCGCTGGCATCCATGTGGCTGCCGCCCACCACGGCGCT GGGCGCAGGTCTGGCCTCCATGTCCCTATATGGCGGCCTCGTCCTCTTCA GTGGCTTCCTGCTCTATGACACTCAGCGCATGGTCCGTCGCGCTGAGGTC TATCCCCAGTACAGCTACACTCCCTACGATCCAATCAACGCCTCAATGTC GATCTACATGGACGTGCTGAACATATTCATCCGCATCGTTACCATTCTGA GTGGTGGTCAGCGCAGGAAGTGAGCACTGGAGACGAACATGTGATGCGAG GATTATACCCTCTAAAATATACATACATATTTATACTGTTATTAAAATAA ACCGATCGAGTTAGGAAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2076-RA | 1495 | CG2076-RA | 116..1437 | 2..1323 | 6610 | 100 | Plus |
CG1287-RA | 1426 | CG1287-RA | 854..1029 | 849..1024 | 385 | 81.2 | Plus |
CG1287-RA | 1426 | CG1287-RA | 740..840 | 735..835 | 205 | 80.1 | Plus |
CG1287-RA | 1426 | CG1287-RA | 399..456 | 394..451 | 140 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 10981634..10982049 | 2..417 | 2080 | 100 | Plus |
chrX | 22417052 | chrX | 10982541..10982880 | 671..1010 | 1700 | 100 | Plus |
chrX | 22417052 | chrX | 10983172..10983349 | 1142..1319 | 875 | 99.4 | Plus |
chrX | 22417052 | chrX | 10982302..10982444 | 530..672 | 715 | 100 | Plus |
chrX | 22417052 | chrX | 10982971..10983108 | 1004..1141 | 675 | 99.3 | Plus |
chrX | 22417052 | chrX | 10982116..10982228 | 417..529 | 565 | 100 | Plus |
chr3R | 27901430 | chr3R | 3327247..3327700 | 1188..735 | 560 | 74.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 11090383..11090798 | 2..417 | 2080 | 100 | Plus |
X | 23542271 | X | 11091290..11091629 | 671..1010 | 1700 | 100 | Plus |
X | 23542271 | X | 11091921..11092102 | 1142..1323 | 910 | 100 | Plus |
X | 23542271 | X | 11091051..11091193 | 530..672 | 715 | 100 | Plus |
X | 23542271 | X | 11091720..11091857 | 1004..1141 | 690 | 100 | Plus |
X | 23542271 | X | 11090865..11090977 | 417..529 | 565 | 100 | Plus |
3R | 32079331 | 3R | 7501184..7501637 | 1188..735 | 545 | 74.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 11098481..11098896 | 2..417 | 2080 | 100 | Plus |
X | 23527363 | X | 11099388..11099727 | 671..1010 | 1700 | 100 | Plus |
X | 23527363 | X | 11100019..11100200 | 1142..1323 | 910 | 100 | Plus |
X | 23527363 | X | 11099149..11099291 | 530..672 | 715 | 100 | Plus |
X | 23527363 | X | 11099818..11099955 | 1004..1141 | 690 | 100 | Plus |
X | 23527363 | X | 11098963..11099075 | 417..529 | 565 | 100 | Plus |
3R | 31820162 | 3R | 7242179..7242354 | 1024..849 | 385 | 81.2 | Minus |
3R | 31820162 | 3R | 7242368..7242468 | 835..735 | 205 | 80.1 | Minus |
3R | 31820162 | 3R | 7242752..7242809 | 451..394 | 140 | 82.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3163..3242 | 1026..945 | 135 | 64.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10981632..10982049 | 1..417 | 99 | -> | Plus |
chrX | 10982117..10982228 | 418..529 | 100 | -> | Plus |
chrX | 10982302..10982443 | 530..671 | 100 | -> | Plus |
chrX | 10982542..10982878 | 672..1008 | 100 | -> | Plus |
chrX | 10982976..10983108 | 1009..1141 | 99 | -> | Plus |
chrX | 10983172..10983349 | 1142..1319 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1026 | 198..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1026 | 198..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1026 | 198..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1026 | 198..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1026 | 198..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1316 | 1..1315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1316 | 1..1315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 2..1319 | 2..1319 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 1..1316 | 1..1315 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2076-RA | 2..1319 | 2..1319 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11090866..11090977 | 418..529 | 100 | -> | Plus |
X | 11091051..11091192 | 530..671 | 100 | -> | Plus |
X | 11091921..11092098 | 1142..1319 | 100 | Plus | |
X | 11090381..11090798 | 1..417 | 99 | -> | Plus |
X | 11091291..11091627 | 672..1008 | 100 | -> | Plus |
X | 11091725..11091857 | 1009..1141 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11090866..11090977 | 418..529 | 100 | -> | Plus |
X | 11091051..11091192 | 530..671 | 100 | -> | Plus |
X | 11091921..11092098 | 1142..1319 | 100 | Plus | |
X | 11090381..11090798 | 1..417 | 99 | -> | Plus |
X | 11091291..11091627 | 672..1008 | 100 | -> | Plus |
X | 11091725..11091857 | 1009..1141 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11090866..11090977 | 418..529 | 100 | -> | Plus |
X | 11091051..11091192 | 530..671 | 100 | -> | Plus |
X | 11091921..11092098 | 1142..1319 | 100 | Plus | |
X | 11090381..11090798 | 1..417 | 99 | -> | Plus |
X | 11091291..11091627 | 672..1008 | 100 | -> | Plus |
X | 11091725..11091857 | 1009..1141 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10985758..10985890 | 1009..1141 | 100 | -> | Plus |
arm_X | 10985954..10986131 | 1142..1319 | 100 | Plus | |
arm_X | 10984414..10984831 | 1..417 | 99 | -> | Plus |
arm_X | 10984899..10985010 | 418..529 | 100 | -> | Plus |
arm_X | 10985084..10985225 | 530..671 | 100 | -> | Plus |
arm_X | 10985324..10985660 | 672..1008 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11098479..11098896 | 1..417 | 99 | -> | Plus |
X | 11098964..11099075 | 418..529 | 100 | -> | Plus |
X | 11099149..11099290 | 530..671 | 100 | -> | Plus |
X | 11099389..11099725 | 672..1008 | 100 | -> | Plus |
X | 11099823..11099955 | 1009..1141 | 100 | -> | Plus |
X | 11100019..11100196 | 1142..1319 | 100 | Plus |
Translation from 197 to 1222
> RH72958.pep MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20290-PA | 340 | GF20290-PA | 1..340 | 2..341 | 1413 | 87.8 | Plus |
Dana\GF17301-PA | 383 | GF17301-PA | 76..382 | 36..341 | 1057 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18387-PA | 341 | GG18387-PA | 1..341 | 1..341 | 1544 | 94.1 | Plus |
Dere\GG25161-PA | 365 | GG25161-PA | 61..364 | 40..341 | 1043 | 68.4 | Plus |
Dere\GG15091-PA | 243 | GG15091-PA | 23..235 | 113..341 | 152 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17920-PA | 341 | GH17920-PA | 1..341 | 1..341 | 1228 | 78 | Plus |
Dgri\GH18310-PA | 366 | GH18310-PA | 35..365 | 21..341 | 1087 | 64.7 | Plus |
Dgri\GH15378-PA | 243 | GH15378-PA | 23..235 | 113..341 | 148 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2076-PB | 341 | CG2076-PB | 1..341 | 1..341 | 1718 | 100 | Plus |
CG2076-PA | 341 | CG2076-PA | 1..341 | 1..341 | 1718 | 100 | Plus |
Mics1-PA | 365 | CG1287-PA | 55..364 | 34..341 | 1089 | 67.1 | Plus |
BI-1-PB | 237 | CG7188-PB | 26..229 | 116..335 | 155 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16063-PA | 334 | GI16063-PA | 1..334 | 1..340 | 1221 | 75.7 | Plus |
Dmoj\GI24122-PA | 367 | GI24122-PA | 72..365 | 49..341 | 1026 | 66.7 | Plus |
Dmoj\GI12982-PA | 244 | GI12982-PA | 23..235 | 113..341 | 149 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18256-PA | 338 | GL18256-PA | 1..338 | 1..341 | 1374 | 82.5 | Plus |
Dper\GL12174-PA | 366 | GL12174-PA | 54..365 | 33..341 | 1017 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28022-PA | 338 | GA28022-PA | 1..338 | 1..341 | 1374 | 82.5 | Plus |
Dpse\GA11871-PA | 366 | GA11871-PA | 54..365 | 33..341 | 1017 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11453-PA | 341 | GM11453-PA | 1..341 | 1..341 | 1742 | 99.1 | Plus |
Dsec\GM10478-PA | 365 | GM10478-PA | 55..364 | 34..341 | 1048 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19479-PA | 365 | GD19479-PA | 55..364 | 34..341 | 1044 | 67.4 | Plus |
Dsim\GD17005-PA | 51 | GD17005-PA | 1..32 | 1..32 | 139 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15635-PA | 337 | GJ15635-PA | 1..337 | 1..341 | 1299 | 79.4 | Plus |
Dvir\GJ10944-PA | 369 | GJ10944-PA | 74..367 | 49..341 | 992 | 67 | Plus |
Translation from 197 to 1222
> RH72958.hyp MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2076-PB | 341 | CG2076-PB | 1..341 | 1..341 | 1718 | 100 | Plus |
CG2076-PA | 341 | CG2076-PA | 1..341 | 1..341 | 1718 | 100 | Plus |
CG1287-PA | 365 | CG1287-PA | 55..364 | 34..341 | 1089 | 67.1 | Plus |
BI-1-PB | 237 | CG7188-PB | 26..229 | 116..335 | 155 | 26.2 | Plus |