BDGP Sequence Production Resources |
Search the DGRC for RH73277
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 732 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4598-RA |
Protein status: | RH73277.pep: gold |
Preliminary Size: | 979 |
Sequenced Size: | 996 |
Gene | Date | Evidence |
---|---|---|
CG4598 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4598 | 2002-04-26 | Blastp of sequenced clone |
CG4598 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4598 | 2008-04-29 | Release 5.5 accounting |
CG4598 | 2008-08-15 | Release 5.9 accounting |
CG4598 | 2008-12-18 | 5.12 accounting |
996 bp (996 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113635
> RH73277.complete GATCGATAGCGCAACAGGTTCTTCGGCAGCTGAGTTTAATAGTTAAAACT GCAGCGCTTAATAATATTCATAGATCAAAATGATGCGATCGAAAGTCTTG AGCTTGGTGGCCCGTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAA GTTGACCACAGTGGAGGTCAACGACAAGACCGGCATCGCCACCCTCACGA TGAACCGGCCACCCGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTG AAGAGCTCCATTGATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTT GACTTCGTCTAGCTCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGA TGTACAAGCCGGATAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAG GATACTTGGCTGGCCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCAT CAATGGACACTCCCCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGT ATCGGGTCATGGTGCCAAACTTTACCATCGGCCTGAACGAAACACAGCTG GGTATTGTGGCGCCCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCC ACAGCGAATTGCGGAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGG AGGAGGCCCTGAAGGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAG GAGGCTATTGAAAAGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAA TCCGCTAGCCAGGTCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTAC AGCAACTGCAGAACGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTT GTCAACCAGCCGGCGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCT GAAGAAGAAGGCCAAGAAGCAATAATGATTTTAAACGTTTTTATATAGTA ATAAAGTTGTTTTGAACCCATTTTATAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4598-RA | 1243 | CG4598-RA | 46..1026 | 2..982 | 4905 | 100 | Plus |
CG4594-RA | 1038 | CG4594-RA | 101..187 | 134..220 | 270 | 87.3 | Plus |
CG4594.a | 1235 | CG4594.a | 298..384 | 134..220 | 270 | 87.3 | Plus |
CG4594-RA | 1038 | CG4594-RA | 590..753 | 623..786 | 250 | 76.8 | Plus |
CG4594.a | 1235 | CG4594.a | 787..950 | 623..786 | 250 | 76.8 | Plus |
CG4594-RA | 1038 | CG4594-RA | 401..490 | 434..523 | 180 | 80 | Plus |
CG4594.a | 1235 | CG4594.a | 598..687 | 434..523 | 180 | 80 | Plus |
CG4594-RA | 1038 | CG4594-RA | 211..300 | 244..333 | 150 | 77.7 | Plus |
CG4594.a | 1235 | CG4594.a | 408..497 | 244..333 | 150 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9918297..9918822 | 455..980 | 2615 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 9917794..9918029 | 72..307 | 1180 | 100 | Plus |
chr2L | 23010047 | chr2L | 9918090..9918238 | 307..455 | 745 | 100 | Plus |
chr2L | 23010047 | chr2L | 9917557..9917628 | 2..73 | 360 | 100 | Plus |
chr2L | 23010047 | chr2L | 9919349..9919515 | 134..300 | 325 | 79.6 | Plus |
chr2L | 23010047 | chr2L | 9919778..9920106 | 458..786 | 265 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9919376..9919903 | 455..982 | 2640 | 100 | Plus |
2L | 23513712 | 2L | 9918873..9919108 | 72..307 | 1180 | 100 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 307..455 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9918636..9918707 | 2..73 | 360 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920594 | 134..300 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9920857..9921185 | 458..786 | 265 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9919376..9919903 | 455..982 | 2640 | 100 | Plus |
2L | 23513712 | 2L | 9918873..9919108 | 72..307 | 1180 | 100 | Plus |
2L | 23513712 | 2L | 9919169..9919317 | 307..455 | 745 | 100 | Plus |
2L | 23513712 | 2L | 9918636..9918707 | 2..73 | 360 | 100 | Plus |
2L | 23513712 | 2L | 9920428..9920514 | 134..220 | 270 | 87.3 | Plus |
2L | 23513712 | 2L | 9921022..9921185 | 623..786 | 250 | 76.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9917556..9917628 | 1..73 | 98 | -> | Plus |
chr2L | 9917796..9918029 | 74..307 | 100 | -> | Plus |
chr2L | 9918091..9918237 | 308..454 | 100 | -> | Plus |
chr2L | 9918297..9918822 | 455..980 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 1..846 | 80..925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 1..846 | 80..925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 1..846 | 80..925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 1..846 | 80..925 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 2..980 | 2..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 1..979 | 2..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 18..997 | 1..980 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 2..980 | 2..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4598-RA | 18..997 | 1..980 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9918875..9919108 | 74..307 | 100 | -> | Plus |
2L | 9919170..9919316 | 308..454 | 100 | -> | Plus |
2L | 9918635..9918707 | 1..73 | 98 | -> | Plus |
2L | 9919376..9919901 | 455..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9918875..9919108 | 74..307 | 100 | -> | Plus |
2L | 9919170..9919316 | 308..454 | 100 | -> | Plus |
2L | 9918635..9918707 | 1..73 | 98 | -> | Plus |
2L | 9919376..9919901 | 455..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9918875..9919108 | 74..307 | 100 | -> | Plus |
2L | 9919170..9919316 | 308..454 | 100 | -> | Plus |
2L | 9918635..9918707 | 1..73 | 98 | -> | Plus |
2L | 9919376..9919901 | 455..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9919170..9919316 | 308..454 | 100 | -> | Plus |
arm_2L | 9918875..9919108 | 74..307 | 100 | -> | Plus |
arm_2L | 9918635..9918707 | 1..73 | 98 | -> | Plus |
arm_2L | 9919376..9919901 | 455..980 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9919170..9919316 | 308..454 | 100 | -> | Plus |
2L | 9918875..9919108 | 74..307 | 100 | -> | Plus |
2L | 9919376..9919901 | 455..980 | 100 | Plus | |
2L | 9918635..9918707 | 1..73 | 98 | -> | Plus |
Translation from 79 to 924
> RH73277.hyp MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4598-PB | 281 | CG4598-PB | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 1..286 | 1..277 | 796 | 55.2 | Plus |
Translation from 79 to 924
> RH73277.pep MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15725-PA | 281 | GF15725-PA | 1..281 | 1..281 | 1344 | 88.6 | Plus |
Dana\GF15726-PA | 260 | GF15726-PA | 2..260 | 22..280 | 983 | 67.6 | Plus |
Dana\GF15727-PA | 286 | GF15727-PA | 1..284 | 1..276 | 830 | 53.9 | Plus |
Dana\GF11465-PA | 299 | GF11465-PA | 46..222 | 33..207 | 168 | 25.4 | Plus |
Dana\GF11161-PA | 293 | GF11161-PA | 50..289 | 36..279 | 156 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10064-PA | 281 | GG10064-PA | 1..281 | 1..281 | 1448 | 97.2 | Plus |
Dere\GG10065-PA | 280 | GG10065-PA | 1..280 | 1..280 | 1044 | 68.2 | Plus |
Dere\GG10066-PA | 287 | GG10066-PA | 32..286 | 23..277 | 837 | 58.8 | Plus |
Dere\GG22562-PA | 299 | GG22562-PA | 46..222 | 33..207 | 172 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11302-PA | 281 | GH11302-PA | 1..280 | 1..279 | 1253 | 83.2 | Plus |
Dgri\GH11303-PA | 282 | GH11303-PA | 1..282 | 1..280 | 756 | 55 | Plus |
Dgri\GH22640-PA | 298 | GH22640-PA | 45..221 | 33..207 | 170 | 27.1 | Plus |
Dgri\GH20865-PA | 293 | GH20865-PA | 46..289 | 32..279 | 153 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4598-PB | 281 | CG4598-PB | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4598-PA | 281 | CG4598-PA | 1..281 | 1..281 | 1411 | 100 | Plus |
CG4594-PB | 280 | CG4594-PB | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4594-PA | 280 | CG4594-PA | 1..280 | 1..280 | 1001 | 67.1 | Plus |
CG4592-PB | 287 | CG4592-PB | 1..286 | 1..277 | 796 | 55.2 | Plus |
CG4592-PA | 287 | CG4592-PA | 1..286 | 1..277 | 796 | 55.2 | Plus |
CG8778-PA | 299 | CG8778-PA | 46..222 | 33..207 | 171 | 26 | Plus |
Echs1-PA | 295 | CG6543-PA | 41..291 | 25..279 | 153 | 24.7 | Plus |
Echs1-PB | 295 | CG6543-PB | 41..291 | 25..279 | 153 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17722-PA | 281 | GI17722-PA | 1..280 | 1..279 | 1148 | 82.5 | Plus |
Dmoj\GI17724-PA | 262 | GI17724-PA | 1..261 | 19..279 | 988 | 68.6 | Plus |
Dmoj\GI17723-PA | 286 | GI17723-PA | 1..286 | 1..280 | 795 | 55.6 | Plus |
Dmoj\GI21154-PA | 301 | GI21154-PA | 50..234 | 35..214 | 173 | 27.6 | Plus |
Dmoj\GI20973-PA | 293 | GI20973-PA | 46..284 | 32..272 | 157 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18943-PA | 280 | GL18943-PA | 1..280 | 1..280 | 1324 | 86.4 | Plus |
Dper\GL18945-PA | 286 | GL18945-PA | 33..285 | 25..277 | 845 | 58.5 | Plus |
Dper\GL18944-PA | 214 | GL18944-PA | 1..214 | 19..281 | 815 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18288-PA | 280 | GA18288-PA | 1..280 | 1..280 | 1318 | 86.1 | Plus |
Dpse\GA25865-PA | 280 | GA25865-PA | 1..280 | 2..281 | 1115 | 71.8 | Plus |
Dpse\GA25867-PA | 286 | GA25867-PA | 33..285 | 25..277 | 845 | 58.5 | Plus |
Dpse\GA19673-PB | 296 | GA19673-PB | 49..287 | 32..272 | 162 | 25.7 | Plus |
Dpse\GA19673-PA | 296 | GA19673-PA | 49..287 | 32..272 | 162 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17765-PA | 281 | GM17765-PA | 1..281 | 1..281 | 1460 | 98.2 | Plus |
Dsec\GM17776-PA | 280 | GM17776-PA | 1..280 | 1..280 | 1044 | 66.8 | Plus |
Dsec\GM17787-PA | 287 | GM17787-PA | 1..286 | 1..277 | 844 | 54.9 | Plus |
Dsec\GM20345-PA | 233 | GM20345-PA | 7..156 | 52..207 | 155 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23637-PA | 281 | GD23637-PA | 1..281 | 1..281 | 1464 | 98.6 | Plus |
Dsim\GD23638-PA | 280 | GD23638-PA | 1..280 | 1..280 | 1042 | 66.4 | Plus |
Dsim\GD23639-PA | 287 | GD23639-PA | 32..286 | 23..277 | 840 | 58.8 | Plus |
Dsim\GD25824-PA | 299 | GD25824-PA | 46..222 | 33..207 | 171 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17550-PA | 281 | GJ17550-PA | 1..280 | 1..279 | 1198 | 83.6 | Plus |
Dvir\GJ17551-PA | 284 | GJ17551-PA | 20..284 | 16..280 | 858 | 60.4 | Plus |
Dvir\GJ21004-PA | 281 | GJ21004-PA | 30..204 | 35..207 | 173 | 28 | Plus |
Dvir\GJ20693-PA | 293 | GJ20693-PA | 46..289 | 32..279 | 156 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18281-PA | 279 | GK18281-PA | 1..278 | 1..279 | 1301 | 87.5 | Plus |
Dwil\GK24255-PA | 290 | GK24255-PA | 1..286 | 1..281 | 912 | 58.7 | Plus |
Dwil\GK24256-PA | 287 | GK24256-PA | 1..273 | 1..271 | 869 | 58.2 | Plus |
Dwil\GK15915-PA | 302 | GK15915-PA | 49..225 | 33..207 | 172 | 27.1 | Plus |
Dwil\GK17937-PA | 295 | GK17937-PA | 25..286 | 9..272 | 159 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18878-PA | 281 | GE18878-PA | 1..281 | 1..281 | 1442 | 96.4 | Plus |
Dyak\GE18879-PA | 280 | GE18879-PA | 1..280 | 1..280 | 1049 | 67.1 | Plus |
Dyak\GE18880-PA | 287 | GE18880-PA | 1..286 | 1..277 | 839 | 54.9 | Plus |
Dyak\GE13432-PA | 299 | GE13432-PA | 46..222 | 33..207 | 172 | 26 | Plus |
Dyak\GE13337-PA | 294 | GE13337-PA | 26..212 | 15..198 | 156 | 26.5 | Plus |