Clone RH73277 Report

Search the DGRC for RH73277

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:732
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG4598-RA
Protein status:RH73277.pep: gold
Preliminary Size:979
Sequenced Size:996

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4598 2002-01-01 Sim4 clustering to Release 2
CG4598 2002-04-26 Blastp of sequenced clone
CG4598 2003-01-01 Sim4 clustering to Release 3
CG4598 2008-04-29 Release 5.5 accounting
CG4598 2008-08-15 Release 5.9 accounting
CG4598 2008-12-18 5.12 accounting

Clone Sequence Records

RH73277.complete Sequence

996 bp (996 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113635

> RH73277.complete
GATCGATAGCGCAACAGGTTCTTCGGCAGCTGAGTTTAATAGTTAAAACT
GCAGCGCTTAATAATATTCATAGATCAAAATGATGCGATCGAAAGTCTTG
AGCTTGGTGGCCCGTGCTGGCTCCAACCGTATGATGTCCACTGCCACCAA
GTTGACCACAGTGGAGGTCAACGACAAGACCGGCATCGCCACCCTCACGA
TGAACCGGCCACCCGTAAATGGTCTTAACTTGGAACTGCTGCAGGACCTG
AAGAGCTCCATTGATGAAATCGAGAGCAATAAGAGTCGCGGACTCATTTT
GACTTCGTCTAGCTCCACAATATTCTCAGCTGGTTTGGATATTCTGGAGA
TGTACAAGCCGGATAAGGACAGGATTCGCGCCTTCTGGACGCAACTGCAG
GATACTTGGCTGGCCCTTTACGGCAGCAGTGTTCCCACAGCGGCAGCCAT
CAATGGACACTCCCCTGCCGGTGGATGCTTGCTAGCCACATCCTGCGAGT
ATCGGGTCATGGTGCCAAACTTTACCATCGGCCTGAACGAAACACAGCTG
GGTATTGTGGCGCCCCAGTGGTTTATGGCCTCTTTCCTGAGCGTCTTGCC
ACAGCGAATTGCGGAACGCGCCCTCAACCAGGGTCGCATGTTCACCACGG
AGGAGGCCCTGAAGGTGGGCCTCATCGATGAGACTGCCAATAACAAAGAG
GAGGCTATTGAAAAGTGTGTCGCCTTCATTGGCACCTTTGCCAAGGTCAA
TCCGCTAGCCAGGTCACTGACCAAGCAGCAATTCCGAGCTGCTGATCTAC
AGCAACTGCAGAACGGACGGAAGGAGGATCTGGAGAAATTCCTGTTCTTT
GTCAACCAGCCGGCGGTACAGAAGGGTCTGGGCATTTATCTCGAGGGTCT
GAAGAAGAAGGCCAAGAAGCAATAATGATTTTAAACGTTTTTATATAGTA
ATAAAGTTGTTTTGAACCCATTTTATAACGAAAAAAAAAAAAAAAA

RH73277.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-RA 1243 CG4598-RA 46..1026 2..982 4905 100 Plus
CG4594-RA 1038 CG4594-RA 101..187 134..220 270 87.3 Plus
CG4594.a 1235 CG4594.a 298..384 134..220 270 87.3 Plus
CG4594-RA 1038 CG4594-RA 590..753 623..786 250 76.8 Plus
CG4594.a 1235 CG4594.a 787..950 623..786 250 76.8 Plus
CG4594-RA 1038 CG4594-RA 401..490 434..523 180 80 Plus
CG4594.a 1235 CG4594.a 598..687 434..523 180 80 Plus
CG4594-RA 1038 CG4594-RA 211..300 244..333 150 77.7 Plus
CG4594.a 1235 CG4594.a 408..497 244..333 150 77.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9918297..9918822 455..980 2615 99.8 Plus
chr2L 23010047 chr2L 9917794..9918029 72..307 1180 100 Plus
chr2L 23010047 chr2L 9918090..9918238 307..455 745 100 Plus
chr2L 23010047 chr2L 9917557..9917628 2..73 360 100 Plus
chr2L 23010047 chr2L 9919349..9919515 134..300 325 79.6 Plus
chr2L 23010047 chr2L 9919778..9920106 458..786 265 72 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919903 455..982 2640 100 Plus
2L 23513712 2L 9918873..9919108 72..307 1180 100 Plus
2L 23513712 2L 9919169..9919317 307..455 745 100 Plus
2L 23513712 2L 9918636..9918707 2..73 360 100 Plus
2L 23513712 2L 9920428..9920594 134..300 325 79.6 Plus
2L 23513712 2L 9920857..9921185 458..786 265 72 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9919376..9919903 455..982 2640 100 Plus
2L 23513712 2L 9918873..9919108 72..307 1180 100 Plus
2L 23513712 2L 9919169..9919317 307..455 745 100 Plus
2L 23513712 2L 9918636..9918707 2..73 360 100 Plus
2L 23513712 2L 9920428..9920514 134..220 270 87.3 Plus
2L 23513712 2L 9921022..9921185 623..786 250 76.8 Plus
Blast to na_te.dros performed on 2019-03-16 07:48:50 has no hits.

RH73277.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:49:29 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9917556..9917628 1..73 98 -> Plus
chr2L 9917796..9918029 74..307 100 -> Plus
chr2L 9918091..9918237 308..454 100 -> Plus
chr2L 9918297..9918822 455..980 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:54:14 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 80..925 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:48:13 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 80..925 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:43 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 80..925 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:09 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..846 80..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:53 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 2..980 2..980 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:54:14 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 1..979 2..980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:13 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 18..997 1..980 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:43 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 2..980 2..980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:09 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
CG4598-RA 18..997 1..980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:29 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9918875..9919108 74..307 100 -> Plus
2L 9919170..9919316 308..454 100 -> Plus
2L 9918635..9918707 1..73 98 -> Plus
2L 9919376..9919901 455..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:29 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9918875..9919108 74..307 100 -> Plus
2L 9919170..9919316 308..454 100 -> Plus
2L 9918635..9918707 1..73 98 -> Plus
2L 9919376..9919901 455..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:29 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9918875..9919108 74..307 100 -> Plus
2L 9919170..9919316 308..454 100 -> Plus
2L 9918635..9918707 1..73 98 -> Plus
2L 9919376..9919901 455..980 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:13 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9919170..9919316 308..454 100 -> Plus
arm_2L 9918875..9919108 74..307 100 -> Plus
arm_2L 9918635..9918707 1..73 98 -> Plus
arm_2L 9919376..9919901 455..980 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:19:19 Download gff for RH73277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9919170..9919316 308..454 100 -> Plus
2L 9918875..9919108 74..307 100 -> Plus
2L 9919376..9919901 455..980 100   Plus
2L 9918635..9918707 1..73 98 -> Plus

RH73277.hyp Sequence

Translation from 79 to 924

> RH73277.hyp
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*

RH73277.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PB 281 CG4598-PB 1..281 1..281 1411 100 Plus
CG4598-PA 281 CG4598-PA 1..281 1..281 1411 100 Plus
CG4594-PB 280 CG4594-PB 1..280 1..280 1001 67.1 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 1..286 1..277 796 55.2 Plus

RH73277.pep Sequence

Translation from 79 to 924

> RH73277.pep
MMRSKVLSLVARAGSNRMMSTATKLTTVEVNDKTGIATLTMNRPPVNGLN
LELLQDLKSSIDEIESNKSRGLILTSSSSTIFSAGLDILEMYKPDKDRIR
AFWTQLQDTWLALYGSSVPTAAAINGHSPAGGCLLATSCEYRVMVPNFTI
GLNETQLGIVAPQWFMASFLSVLPQRIAERALNQGRMFTTEEALKVGLID
ETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQLQNGRKED
LEKFLFFVNQPAVQKGLGIYLEGLKKKAKKQ*

RH73277.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15725-PA 281 GF15725-PA 1..281 1..281 1344 88.6 Plus
Dana\GF15726-PA 260 GF15726-PA 2..260 22..280 983 67.6 Plus
Dana\GF15727-PA 286 GF15727-PA 1..284 1..276 830 53.9 Plus
Dana\GF11465-PA 299 GF11465-PA 46..222 33..207 168 25.4 Plus
Dana\GF11161-PA 293 GF11161-PA 50..289 36..279 156 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10064-PA 281 GG10064-PA 1..281 1..281 1448 97.2 Plus
Dere\GG10065-PA 280 GG10065-PA 1..280 1..280 1044 68.2 Plus
Dere\GG10066-PA 287 GG10066-PA 32..286 23..277 837 58.8 Plus
Dere\GG22562-PA 299 GG22562-PA 46..222 33..207 172 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11302-PA 281 GH11302-PA 1..280 1..279 1253 83.2 Plus
Dgri\GH11303-PA 282 GH11303-PA 1..282 1..280 756 55 Plus
Dgri\GH22640-PA 298 GH22640-PA 45..221 33..207 170 27.1 Plus
Dgri\GH20865-PA 293 GH20865-PA 46..289 32..279 153 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4598-PB 281 CG4598-PB 1..281 1..281 1411 100 Plus
CG4598-PA 281 CG4598-PA 1..281 1..281 1411 100 Plus
CG4594-PB 280 CG4594-PB 1..280 1..280 1001 67.1 Plus
CG4594-PA 280 CG4594-PA 1..280 1..280 1001 67.1 Plus
CG4592-PB 287 CG4592-PB 1..286 1..277 796 55.2 Plus
CG4592-PA 287 CG4592-PA 1..286 1..277 796 55.2 Plus
CG8778-PA 299 CG8778-PA 46..222 33..207 171 26 Plus
Echs1-PA 295 CG6543-PA 41..291 25..279 153 24.7 Plus
Echs1-PB 295 CG6543-PB 41..291 25..279 153 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17722-PA 281 GI17722-PA 1..280 1..279 1148 82.5 Plus
Dmoj\GI17724-PA 262 GI17724-PA 1..261 19..279 988 68.6 Plus
Dmoj\GI17723-PA 286 GI17723-PA 1..286 1..280 795 55.6 Plus
Dmoj\GI21154-PA 301 GI21154-PA 50..234 35..214 173 27.6 Plus
Dmoj\GI20973-PA 293 GI20973-PA 46..284 32..272 157 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18943-PA 280 GL18943-PA 1..280 1..280 1324 86.4 Plus
Dper\GL18945-PA 286 GL18945-PA 33..285 25..277 845 58.5 Plus
Dper\GL18944-PA 214 GL18944-PA 1..214 19..281 815 60.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18288-PA 280 GA18288-PA 1..280 1..280 1318 86.1 Plus
Dpse\GA25865-PA 280 GA25865-PA 1..280 2..281 1115 71.8 Plus
Dpse\GA25867-PA 286 GA25867-PA 33..285 25..277 845 58.5 Plus
Dpse\GA19673-PB 296 GA19673-PB 49..287 32..272 162 25.7 Plus
Dpse\GA19673-PA 296 GA19673-PA 49..287 32..272 162 25.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17765-PA 281 GM17765-PA 1..281 1..281 1460 98.2 Plus
Dsec\GM17776-PA 280 GM17776-PA 1..280 1..280 1044 66.8 Plus
Dsec\GM17787-PA 287 GM17787-PA 1..286 1..277 844 54.9 Plus
Dsec\GM20345-PA 233 GM20345-PA 7..156 52..207 155 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23637-PA 281 GD23637-PA 1..281 1..281 1464 98.6 Plus
Dsim\GD23638-PA 280 GD23638-PA 1..280 1..280 1042 66.4 Plus
Dsim\GD23639-PA 287 GD23639-PA 32..286 23..277 840 58.8 Plus
Dsim\GD25824-PA 299 GD25824-PA 46..222 33..207 171 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17550-PA 281 GJ17550-PA 1..280 1..279 1198 83.6 Plus
Dvir\GJ17551-PA 284 GJ17551-PA 20..284 16..280 858 60.4 Plus
Dvir\GJ21004-PA 281 GJ21004-PA 30..204 35..207 173 28 Plus
Dvir\GJ20693-PA 293 GJ20693-PA 46..289 32..279 156 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18281-PA 279 GK18281-PA 1..278 1..279 1301 87.5 Plus
Dwil\GK24255-PA 290 GK24255-PA 1..286 1..281 912 58.7 Plus
Dwil\GK24256-PA 287 GK24256-PA 1..273 1..271 869 58.2 Plus
Dwil\GK15915-PA 302 GK15915-PA 49..225 33..207 172 27.1 Plus
Dwil\GK17937-PA 295 GK17937-PA 25..286 9..272 159 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18878-PA 281 GE18878-PA 1..281 1..281 1442 96.4 Plus
Dyak\GE18879-PA 280 GE18879-PA 1..280 1..280 1049 67.1 Plus
Dyak\GE18880-PA 287 GE18880-PA 1..286 1..277 839 54.9 Plus
Dyak\GE13432-PA 299 GE13432-PA 46..222 33..207 172 26 Plus
Dyak\GE13337-PA 294 GE13337-PA 26..212 15..198 156 26.5 Plus