BDGP Sequence Production Resources |
Search the DGRC for RH73529
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 735 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | LSm7-RA |
Protein status: | RH73529.pep: gold |
Preliminary Size: | 653 |
Sequenced Size: | 712 |
Gene | Date | Evidence |
---|---|---|
CG13277 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13277 | 2002-04-26 | Blastp of sequenced clone |
CG13277 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13277 | 2008-04-29 | Release 5.5 accounting |
CG13277 | 2008-08-15 | Release 5.9 accounting |
CG13277 | 2008-12-18 | 5.12 accounting |
712 bp (712 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113637
> RH73529.complete GACCAGCCGGCATTTACCAAAAACAGAATAATGGCAGATAAAAAGGTGGG TGGCAACAATGACGGTAAGGAGAAGCGCCGCAAGGAGTCCATTCTGGACC TCTCCAAGTACTTGGAGAAACAGATCCGCGTGAAATTCGCGGGCGGCCGC GAGGCATCCGGAATCCTCAAGGGCTACGATGCGCTGCTCAATCTGGTGCT GGACAACACGGTGGAGTATCTGCGCGACTCGGATGAGCCCTACAAACTGA CCGAGGAGCAGACCCGCAGCCTGGGACTGGTCGTCTGTCGCGGCACAGCC CTCGTCCTCATTTGTCCGCAAGACGGAGTCGAGAGCATCGCCAATCCGTT TATAACGCAATAGTCCAAGGTTTTGTGGCTGGGATGCGTTCCAGAATGTA GACTAAGTACAAAGCTCTTTTGGAAATCGGTTTAAATATATTTAGCGGAG ACATACATACGTATAAATTAGTTCTTAAAATCTAATCAGGCCGCAAAGTA CCACGTTTATGAGCCCGCGAAATTGTTTAAGCTTCTCCATAAAATTCAGA GTGTTCCGATTTTAAATTAATGCACTTTATCCTCTTCAGGTATGTTACGA AGTTATCTACGGGTTTGCTTACGGTCAGATTTTGAAAGCTGAATCATCTA AATATGCGTAATCCAATTTATAAATATTAATTTTTCTAAACAATTAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LSm7-RA | 842 | LSm7-RA | 55..752 | 2..699 | 3490 | 100 | Plus |
LSm7.c | 659 | LSm7.c | 55..462 | 2..409 | 2040 | 100 | Plus |
LSm7.a | 653 | LSm7.a | 55..453 | 2..400 | 1995 | 100 | Plus |
LSm7.c | 659 | LSm7.c | 460..569 | 590..699 | 550 | 100 | Plus |
LSm7.a | 653 | LSm7.a | 451..560 | 590..699 | 550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16741113..16741727 | 46..660 | 100 | <- | Minus |
chr2L | 16741787..16741830 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13277-RA | 1..333 | 31..363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 1..333 | 31..363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 1..333 | 31..363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13277-RA | 1..333 | 31..363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 1..333 | 31..363 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13277-RA | 1..694 | 2..695 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 1..694 | 2..695 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 11..705 | 1..695 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13277-RA | 1..694 | 2..695 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LSm7-RA | 11..705 | 1..695 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16742337..16742986 | 46..695 | 100 | <- | Minus |
2L | 16743046..16743089 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16742337..16742986 | 46..695 | 100 | <- | Minus |
2L | 16743046..16743089 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16742337..16742986 | 46..695 | 100 | <- | Minus |
2L | 16743046..16743089 | 1..45 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16743046..16743089 | 1..45 | 97 | Minus | |
arm_2L | 16742337..16742986 | 46..695 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16742337..16742986 | 46..695 | 100 | <- | Minus |
2L | 16743046..16743089 | 1..45 | 97 | Minus |
Translation from 3 to 362
> RH73529.hyp QPAFTKNRIMADKKVGGNNDGKEKRRKESILDLSKYLEKQIRVKFAGGRE ASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTAL VLICPQDGVESIANPFITQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LSm7-PB | 110 | CG13277-PB | 1..110 | 10..119 | 557 | 100 | Plus |
LSm7-PC | 110 | CG13277-PC | 1..110 | 10..119 | 557 | 100 | Plus |
LSm7-PA | 110 | CG13277-PA | 1..110 | 10..119 | 557 | 100 | Plus |
SmG-PB | 76 | CG9742-PB | 8..76 | 32..109 | 142 | 35.9 | Plus |
SmG-PA | 76 | CG9742-PA | 8..76 | 32..109 | 142 | 35.9 | Plus |
Translation from 30 to 362
> RH73529.pep MADKKVGGNNDGKEKRRKESILDLSKYLEKQIRVKFAGGREASGILKGYD ALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGV ESIANPFITQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14546-PA | 110 | GF14546-PA | 1..110 | 1..110 | 557 | 97.3 | Plus |
Dana\GF21254-PA | 101 | GF21254-PA | 25..95 | 15..94 | 145 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20109-PA | 110 | GG20109-PA | 1..110 | 1..110 | 567 | 100 | Plus |
Dere\GG18240-PA | 76 | GG18240-PA | 8..76 | 23..100 | 145 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10206-PA | 113 | GH10206-PA | 1..110 | 1..110 | 555 | 97.3 | Plus |
Dgri\GH12097-PA | 76 | GH12097-PA | 8..76 | 23..100 | 147 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LSm7-PB | 110 | CG13277-PB | 1..110 | 1..110 | 557 | 100 | Plus |
LSm7-PC | 110 | CG13277-PC | 1..110 | 1..110 | 557 | 100 | Plus |
LSm7-PA | 110 | CG13277-PA | 1..110 | 1..110 | 557 | 100 | Plus |
SNRPG-PB | 76 | CG9742-PB | 8..76 | 23..100 | 142 | 35.9 | Plus |
SNRPG-PA | 76 | CG9742-PA | 8..76 | 23..100 | 142 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14941-PA | 110 | GI14941-PA | 1..110 | 1..110 | 554 | 97.3 | Plus |
Dmoj\GI11102-PA | 76 | GI11102-PA | 8..76 | 23..100 | 148 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19334-PA | 110 | GL19334-PA | 1..110 | 1..110 | 548 | 96.4 | Plus |
Dper\GL24044-PA | 76 | GL24044-PA | 8..76 | 23..100 | 143 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12164-PA | 110 | GA12164-PA | 1..110 | 1..110 | 548 | 96.4 | Plus |
Dpse\GA26490-PA | 76 | GA26490-PA | 8..76 | 23..100 | 143 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17159-PA | 110 | GM17159-PA | 1..110 | 1..110 | 567 | 100 | Plus |
Dsec\GM13382-PA | 76 | GM13382-PA | 8..76 | 23..100 | 142 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21898-PA | 110 | GD21898-PA | 1..110 | 1..110 | 567 | 100 | Plus |
Dsim\GD15738-PA | 76 | GD15738-PA | 8..76 | 23..100 | 142 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24083-PA | 110 | GJ24083-PA | 1..110 | 1..110 | 554 | 97.3 | Plus |
Dvir\GJ15956-PA | 76 | GJ15956-PA | 8..76 | 23..100 | 148 | 38.5 | Plus |