Clone RH73632 Report

Search the DGRC for RH73632

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:736
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG4300-RB
Protein status:RH73632.pep: gold
Preliminary Size:1275
Sequenced Size:2017

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4300 2002-01-01 Sim4 clustering to Release 2
CG4300 2003-01-29 Blastp of sequenced clone
CG4300 2008-04-29 Release 5.5 accounting
CG4300 2008-08-15 Release 5.9 accounting
CG4300 2008-12-18 5.12 accounting

Clone Sequence Records

RH73632.complete Sequence

2017 bp (2017 high quality bases) assembled on 2003-01-29

GenBank Submission: BT003439

> RH73632.complete
GATTGGTGCTCGTAAGGCGCATCACTAGTATTTCGTTTCGGTCGGTACGC
GGTTCAGCGTTTTTGTTCAACGGATTAGCGCAAGTTAAGCACGATGGCGG
CCCAGACGATACTGTTTGATTTCACGCTGGACAAGGACAAGACGGCGGAT
GAGGAGGCGCGCCTCCAGGTGGCCAAAATCCTGCGTAACGAGCTGGAGCA
GCTGTTCCCCCAGCTGGAGCTGGCCTACTCGATGGAGTCGCCGGAAAACG
GCTACTTTGCGGTGCTGCACGAGAACAAGGACACGGTGATTACCTGCCGC
ATCTTCCAGCACGGCCTGCTGACGCTCAACGTGGAGTACTTCCTGCCCGA
TGGCAAGGAGCCGAGCATATCCTTCGACAGCGGTAAGAGCCTGGAGAATG
TCCTGGCAATCAAACTGAAGGCCATCAAGGCCCAGAAGCTGCCGACGCTG
AAGCGCGGCGATGTCTCCAGGTACTTCCCATCGTCAGATGAGCGCATCAT
CGAGTACGACATCGACAAGGTGGTCTTCGAGGCGCGCTCGCCCTTCCAGA
AGATTCAAATCATGCACTCCAAGACCCTGGGCAACATGCTGCTCCTCGAC
GAGCTGCAGAACATTGCTGAATCCGATTTGATTTACACGGAGACCCTGAT
GTGTCGCGGCGTGGAGAACTACGAGGGCAAGGAGATCTGCATCCTGGGCG
GCGGTGATGGCGCCTTGTTGTACGAGCTACTCAAGGAGAATCCGAAGCAT
GTGGTGATGCTGGAGATCGATGAGCTTGTGATGCAAACCTGCAACAAATA
CCTCAACGTGATCTGCGGCGATGTGCTGGAGAAACGCAAGGGCGATCAGT
ACGAGATCATTGTGGGCGACTGTGTGGAGTACTTGAAGAAGTTCATCGCC
GAGGGCCGCAAGTTCGACTACGTTTTTGGGGATCTTACGGACATACCCAT
AACCGATGCCCCGGAGGGCGAGACCTGGGATTTCATTCGTACCATCTTCG
AGCACTCCTTCAAGGTGCTGAAACCCGACGGAAAGTATTTGACTCATGGC
AATGGGTCCACCTGCAAGGTGCAGCTGCGTCTATTCGAGGAGCAGTTGAA
TTTGCTGCGTCCCAAGGTGAAGTTCACCACCACCAAGGCGTTTGTGCCGT
CGTTCATGGAAGAGTGGCTCTTCTACCAAGTGACTTTCGCCTGACAAGCT
CAGGTGGACTCCTCAGCAGCAGCAGTAGCTACTTCTAGCGCACCACCAAC
CGCCAGTCACACACCAGCATCACACAGCATAAGTCAGGAACCGGGAACCG
TCGGAGAGATGCTCCAGCTGCACTCCTACACTGTCACTATCCATGGAGCA
GCAGTCGGAGTTCAGGAGGAGGAAAATATGAATAATGGAGCCGTGGGTCA
ATTGAAACCGCGACCAAGGCGTCGAAAGAAGAAGCGTGTACACTACCATC
ACACGCTGGTTTCTTAGTCCAGGAAACACGGAATCCGATGCACAAGCTAA
TCGCCATCATCGAAACCATCGCAACAAAACCCAAGACAGAGGAAAACACG
CACTTCCAATGGCTGTTACTTACAATTGAAAACCAAACCAAATACTGAAC
CCAATTCGTTTACGCTTAAGTTAGGCTTTAGTTCCGTTTCTCGTTCACTG
ATTTCAATGCTAAAAACTAAGACAAAAGTACAACCTTTAAGCAAGGACAG
GCTAAAATAATAACTTATGTATTCGTGTTTATTTGAATTACGCCTAAGCA
TAGCATGTTGGCCAACTATTTGTAATATTTCGTATAACGTGTACATCTAT
ATAATGTAGACCATATGTTTAGTTATCCATTAACAAGCAAAGTGGAGCGG
GGAAGGCCCAAGGATCGAGGATGTGTGTATGTGGGTGTGAGGAAGCGTAG
CAGGAACACCAACTTTTATTGCTGTAATAACGATTAATACCAAACATTTT
AAACGGGAGAACTAATAAAGTTAAATAAATAGTCGTACGCAGAAATAAAA
AAAAAAAAAAAAAAAAA

RH73632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-RB 2080 CG4300-RB 39..2033 5..1999 9975 100 Plus
CG4300-RA 2083 CG4300-RA 521..2036 484..1999 7580 100 Plus
CG4300.a 1929 CG4300.a 494..1882 611..1999 6945 100 Plus
CG4300.a 1929 CG4300.a 11..494 5..488 2420 100 Plus
CG4300-RA 2083 CG4300-RA 39..413 5..379 1875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12262308..12263693 1996..611 6840 99.6 Minus
chr3L 24539361 chr3L 12267542..12267915 378..5 1840 99.5 Minus
chr3L 24539361 chr3L 12264149..12264272 608..485 590 98.4 Minus
chr3L 24539361 chr3L 12264652..12264760 487..379 545 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12271653..12273041 1999..611 6945 100 Minus
3L 28110227 3L 12276890..12277263 378..5 1870 100 Minus
3L 28110227 3L 12273498..12273623 610..485 630 100 Minus
3L 28110227 3L 12274003..12274111 487..379 545 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12264753..12266141 1999..611 6945 100 Minus
3L 28103327 3L 12269990..12270363 378..5 1870 100 Minus
3L 28103327 3L 12266598..12266723 610..485 630 100 Minus
3L 28103327 3L 12267103..12267211 487..379 545 100 Minus
Blast to na_te.dros performed 2019-03-16 05:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2424 1214..1291 123 72 Plus

RH73632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:15:21 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12262308..12263693 611..1996 99 <- Minus
chr3L 12264147..12264269 488..610 97 <- Minus
chr3L 12264652..12264760 379..487 100 <- Minus
chr3L 12267542..12267918 1..378 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:00 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1101 94..1194 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:37 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1101 94..1194 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:08:30 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1101 94..1194 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:42 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1101 94..1194 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:22 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RC 1..1374 94..1467 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:08:08 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1995 2..1996 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:37 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1995 2..1996 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:30 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1980 17..1996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:42 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1995 2..1996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:22 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
CG4300-RB 1..1980 17..1996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:21 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12271656..12273041 611..1996 100 <- Minus
3L 12273498..12273620 488..610 100 <- Minus
3L 12274003..12274111 379..487 100 <- Minus
3L 12276890..12277266 1..378 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:21 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12271656..12273041 611..1996 100 <- Minus
3L 12273498..12273620 488..610 100 <- Minus
3L 12274003..12274111 379..487 100 <- Minus
3L 12276890..12277266 1..378 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:21 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12271656..12273041 611..1996 100 <- Minus
3L 12273498..12273620 488..610 100 <- Minus
3L 12274003..12274111 379..487 100 <- Minus
3L 12276890..12277266 1..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:30 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12267103..12267211 379..487 100 <- Minus
arm_3L 12264756..12266141 611..1996 100 <- Minus
arm_3L 12266598..12266720 488..610 100 <- Minus
arm_3L 12269990..12270366 1..378 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:36 Download gff for RH73632.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12267103..12267211 379..487 100 <- Minus
3L 12264756..12266141 611..1996 100 <- Minus
3L 12266598..12266720 488..610 100 <- Minus
3L 12269990..12270366 1..378 99   Minus

RH73632.pep Sequence

Translation from 93 to 1193

> RH73632.pep
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDSGKSL
ENVLAIKLKAIKAQKLPTLKRGDVSRYFPSSDERIIEYDIDKVVFEARSP
FQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICI
LGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKG
DQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRT
IFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAF
VPSFMEEWLFYQVTFA*

RH73632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24990-PA 367 GF24990-PA 1..367 1..366 1683 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13840-PA 367 GG13840-PA 1..367 1..366 1777 91.8 Plus
Dere\GG16982-PA 287 GG16982-PA 26..197 140..320 149 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16076-PA 367 GH16076-PA 1..367 1..366 1537 77.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sms-PC 457 CG4300-PC 1..366 1..366 1899 100 Plus
Sms-PB 366 CG4300-PB 1..366 1..366 1899 100 Plus
Sms-PD 458 CG4300-PD 1..367 1..366 1766 92.9 Plus
Sms-PA 367 CG4300-PA 1..367 1..366 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 140..319 156 30.5 Plus
SpdS-PA 287 CG8327-PA 26..196 140..319 156 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12338-PA 454 GI12338-PA 1..363 1..362 1535 78.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25003-PA 367 GL25003-PA 1..367 1..366 1606 81.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18092-PB 369 GA18092-PB 1..369 1..366 1698 85.4 Plus
Dpse\GA18092-PA 367 GA18092-PA 1..367 1..366 1606 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24668-PA 367 GM24668-PA 1..367 1..366 1797 92.4 Plus
Dsec\GM23823-PA 287 GM23823-PA 26..197 140..320 151 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12732-PA 420 GD12732-PA 1..420 1..366 1859 86.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12230-PA 367 GJ12230-PA 1..367 1..366 1573 79.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12827-PA 433 GK12827-PA 1..315 1..314 1395 82.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20131-PA 467 GE20131-PA 101..467 47..366 1645 86.6 Plus
Dyak\GE20131-PA 467 GE20131-PA 1..95 1..95 492 98.9 Plus
Dyak\GE25970-PA 287 GE25970-PA 26..197 140..320 151 31.2 Plus

RH73632.hyp Sequence

Translation from 93 to 1193

> RH73632.hyp
MAAQTILFDFTLDKDKTADEEARLQVAKILRNELEQLFPQLELAYSMESP
ENGYFAVLHENKDTVITCRIFQHGLLTLNVEYFLPDGKEPSISFDSGKSL
ENVLAIKLKAIKAQKLPTLKRGDVSRYFPSSDERIIEYDIDKVVFEARSP
FQKIQIMHSKTLGNMLLLDELQNIAESDLIYTETLMCRGVENYEGKEICI
LGGGDGALLYELLKENPKHVVMLEIDELVMQTCNKYLNVICGDVLEKRKG
DQYEIIVGDCVEYLKKFIAEGRKFDYVFGDLTDIPITDAPEGETWDFIRT
IFEHSFKVLKPDGKYLTHGNGSTCKVQLRLFEEQLNLLRPKVKFTTTKAF
VPSFMEEWLFYQVTFA*

RH73632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4300-PB 366 CG4300-PB 1..366 1..366 1899 100 Plus
CG4300-PC 457 CG4300-PC 1..366 1..366 1899 100 Plus
CG4300-PA 367 CG4300-PA 1..367 1..366 1766 92.9 Plus
CG4300-PD 458 CG4300-PD 1..367 1..366 1766 92.9 Plus
SpdS-PC 287 CG8327-PC 26..196 140..319 156 30.5 Plus