Clone RH74174 Report

Search the DGRC for RH74174

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:741
Well:74
Vector:pFlc-1
Associated Gene/TranscriptYL-1-RA
Protein status:RH74174.pep: gold
Preliminary Size:1148
Sequenced Size:1236

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4621 2002-01-01 Sim4 clustering to Release 2
CG4621 2002-06-13 Blastp of sequenced clone
CG4621 2003-01-01 Sim4 clustering to Release 3
YL-1 2008-04-29 Release 5.5 accounting
YL-1 2008-08-15 Release 5.9 accounting
YL-1 2008-12-18 5.12 accounting

Clone Sequence Records

RH74174.complete Sequence

1236 bp (1236 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122237

> RH74174.complete
GATTGGTCACACTGCTCTGCTTGTTTACATTTACAAATTGTAAAATATTA
TTATTTAATAGCTGCTTTAAATCATAGTTTCTATATATAAATAACAAAAA
TGGCTGCCTCGCGATCACGGCGCAACAATGCCGGCAACAAAATAGCTCAT
TTGCTCAATGAGGAAGAGGAGGACGACTTTTACAAAACGTCCTATGGTGG
ATTTCAGGAAGACGAAGAGGATAAGGAATACGAGCAAAAAGACGAAGAGG
AAGATGTGGTTGACTCCGACTTCAGTATCGATGAGAACGACGAGCCCGTT
TCGGATCAGGAAGAGGCGCCCGAGAAAAAGCGGAAACGCGGTGTCGTTAA
CACAAAGGCTTATAAGGAAACCAAGCCTGCAGTCAAAAAGGAAACAAAGG
CAACGCCGGCCCTGCACAAGAAACGACCTGGTGGTGGGGTAACGAAACGG
CGGCCACGTCCACGCTTCACGGTCCTCGATTCCGGCCGCAAATCCATACG
CACTTCCACGGCCATCAAGACACAGGCTACCAAAATACGCCTCAAAGAGT
TGGACGATGCCCGCAAGCGCAAAAAGAAGAAGGTGCGCGTGGAGGACTAC
ATGCCCACGCAGGAGGAGCTGCTGGAGGAGGCCAAAATAACCGAGGAAGA
AAACACTAAATCTTTGGAGAAATTCCAGAAAATGGAGCTGGAGAAGAAGA
AATCACGTCCCACCAAGCGCACGTTCTCCGGACCCACGATACGCTACCAC
TCACTAACCATGCCAGCGATGCGAAAGCCCACTCGCGGAGCAAACCCTGC
GGTCGATTCAAAGGATCTTGCTGGGAAGTGCGAACGCACATTCGTTACAA
TCGAGAACGATTTCAATGACAAGGTGTTTCAAAGCCTCTTCCGCCACAAG
GCGCCTCCCAAAGCCAGCAATGGCATCTGTCCAATCACCAGGCTGCCAGC
CCGTTACTTTGACCCGATCACACAGCAGCCATACTACAGCATCCAGGCCT
TCAAAATTCTGCGCGAAGCCTACTACATGCAGCTGGAACAGCAAGGCGGC
GGCAGCGAGCAACCCGAACTGGCCAAATGGCTGGAATGGCGCAAGCTGGT
CAAGGAGAATCGTCTGAAGGCTTCGGCAGCTGCCAGCAAAAACGGAGATA
ACTAATAATGCTATCAATTTTATAGTTCATTAAGCTATACGTATTTTTCG
AATAAAAAGGTATAAGAAACCAAAAAAAAAAAAAAA

RH74174.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-RA 1351 YL-1-RA 24..1248 2..1226 6080 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10970071..10970623 667..1219 2765 100 Plus
chr2L 23010047 chr2L 10969710..10970012 365..667 1515 100 Plus
chr2L 23010047 chr2L 10969211..10969443 2..234 1150 99.6 Plus
chr2L 23010047 chr2L 10969503..10969636 234..367 670 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971875 667..1226 2770 99.6 Plus
2L 23513712 2L 10970955..10971257 365..667 1515 100 Plus
2L 23513712 2L 10970456..10970688 2..234 1150 99.6 Plus
2L 23513712 2L 10970748..10970881 234..367 670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10971316..10971875 667..1226 2770 99.6 Plus
2L 23513712 2L 10970955..10971257 365..667 1515 100 Plus
2L 23513712 2L 10970456..10970688 2..234 1150 99.5 Plus
2L 23513712 2L 10970748..10970881 234..367 670 100 Plus
Blast to na_te.dros performed 2019-03-16 05:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5812..5854 51..8 118 77.3 Minus

RH74174.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:15:26 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10969210..10969442 1..233 99 -> Plus
chr2L 10969503..10969635 234..366 100 -> Plus
chr2L 10969712..10970012 367..667 100 -> Plus
chr2L 10970072..10970625 668..1221 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:11 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 100..1155 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:08 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 100..1155 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:08:39 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 100..1155 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:00 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 100..1155 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:00:31 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 1..1056 100..1155 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:09 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 2..1221 2..1221 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:08 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 18..1238 1..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:39 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 13..1233 1..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:00 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 2..1221 2..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:00:31 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
YL-1-RA 13..1233 1..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:26 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970455..10970687 1..233 99 -> Plus
2L 10970748..10970880 234..366 100 -> Plus
2L 10970957..10971257 367..667 100 -> Plus
2L 10971317..10971870 668..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:26 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970455..10970687 1..233 99 -> Plus
2L 10970748..10970880 234..366 100 -> Plus
2L 10970957..10971257 367..667 100 -> Plus
2L 10971317..10971870 668..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:15:26 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970455..10970687 1..233 99 -> Plus
2L 10970748..10970880 234..366 100 -> Plus
2L 10970957..10971257 367..667 100 -> Plus
2L 10971317..10971870 668..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:39 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10970455..10970687 1..233 99 -> Plus
arm_2L 10970748..10970880 234..366 100 -> Plus
arm_2L 10970957..10971257 367..667 100 -> Plus
arm_2L 10971317..10971870 668..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:35 Download gff for RH74174.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10970455..10970687 1..233 99 -> Plus
2L 10970748..10970880 234..366 100 -> Plus
2L 10970957..10971257 367..667 100 -> Plus
2L 10971317..10971870 668..1221 99   Plus

RH74174.hyp Sequence

Translation from 99 to 1154

> RH74174.hyp
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
N*

RH74174.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-PB 351 CG4621-PB 1..351 1..351 1818 100 Plus
YL-1-PA 351 CG4621-PA 1..351 1..351 1818 100 Plus

RH74174.pep Sequence

Translation from 99 to 1154

> RH74174.pep
MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEE
EDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETK
ATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE
LDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKK
KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVT
IENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQA
FKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGD
N*

RH74174.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15835-PA 353 GF15835-PA 1..353 1..351 1563 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23686-PA 351 GG23686-PA 1..350 1..350 1663 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17016-PA 350 GH17016-PA 1..350 1..350 1413 82.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
YL-1-PB 351 CG4621-PB 1..351 1..351 1818 100 Plus
YL-1-PA 351 CG4621-PA 1..351 1..351 1818 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10744-PA 351 GI10744-PA 1..346 1..345 1372 80.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13769-PA 352 GL13769-PA 1..351 1..350 1413 83.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26786-PA 352 GA26786-PA 1..351 1..350 1407 83.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18769-PA 351 GM18769-PA 1..351 1..351 1803 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23743-PA 351 GD23743-PA 1..351 1..351 1814 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10687-PA 353 GJ10687-PA 1..347 1..345 1456 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11323-PA 351 GK11323-PA 1..351 1..349 1454 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18498-PA 351 GE18498-PA 1..351 1..351 1720 95.2 Plus