Clone RH74182 Report

Search the DGRC for RH74182

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:741
Well:82
Vector:pFlc-1
Associated Gene/TranscriptEip71CD-RC
Protein status:RH74182.pep: validated not full length
Sequenced Size:997

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7266 2004-03-31 Blastp of sequenced clone
Eip71CD 2008-04-29 Release 5.5 accounting
Eip71CD 2008-08-15 Release 5.9 accounting
Eip71CD 2008-12-18 5.12 accounting

Clone Sequence Records

RH74182.complete Sequence

997 bp (997 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012430

> RH74182.complete
GATCAGTTCAGCTTTAAATGTTAAAAGCGACACATTAAATAAATAACAAT
TTTAACTAGTGAAATCATGTCTCTGACTATTACTTCCAGTGTCACTCATC
CTGAGCTCAAGGATCTGAGCACCGTTCGCAATGAACAAAAGGAACTGAAC
ATTTCGCCGGTTCACGATGTGAATGTCACAAAAGCCACGGCCACTTTCGG
CATGGGTTGCTTTTGGGGCGCAGAATCCCTGTATGGAGCCACCCGTGGAG
TTTTGAGAACCACCGTGGGCTACGCCGGAGGCAGCTCGGATTTGCCAACG
TACCGTAAAATGGGCGATCATACGGAGGTGCTGGAAATCGACTATGATCC
CAAGGTCATTAGCTTTAAGGAGCTGCTGGATCTGTTCTGGAACAACCATG
AGTATGGCCTGACCACGCCCATCAAGAGGCAGTACGCCTCCTTGATTCTG
TACCACGATGAGGAGCAGAAGCAGGTGGCACACGCCTCCAAATTGGAGGA
GCAAGAGCGCCGTGCACCGGAGATCATAACCACTGAGATTGCATCCAAGG
AGAACTTTTACCCAGCCGAGGCGTACCACCAGAAGTATAGGTTGCAGGGC
CACAAGGATCTCGCCTCATCGCTAAATCTCAGCCCCAAACTGCTGCAGAC
CAGCTATGTGGCCACCAAACTGAATGGCTACCTGGCCGGAGTCGGCGGCA
TCGAGCAGTTTAAGGCGGAGGCGGAGACCATGGGTCTGACGCCCACCCAG
CGGCAGTACTGCTACTACCACGTGGAGCAGAACGAGGGCCAGGGTCTCTA
CTGCTGACATGGCCGAATCTGCATAGACGTTAAGCGTAGATCGTACACCT
AGGGGGGTAATTTTATGGATAGTTTGCTTGTTCAAAAACAGATTGTGTAT
TACGTAGACTTAGAAACGTATGAAATATATATGAAACGCATATATTTTAT
TATTATAATAAAAAAAAATATCTCAAACTAAAAAAAAAAAAAAAAAA

RH74182.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Eip71CD-RA 1102 Eip71CD-RA 119..1099 2..982 4875 99.7 Plus
Eip71CD.b 1116 Eip71CD.b 443..1113 312..982 3340 99.8 Plus
Eip71CD-RC 1110 Eip71CD-RC 443..1110 312..979 3325 99.8 Plus
Eip71CD.b 1116 Eip71CD.b 23..333 2..312 1540 99.6 Plus
Eip71CD-RC 1110 Eip71CD-RC 23..333 2..312 1540 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15502745..15503151 573..979 1990 99.3 Plus
chr3L 24539361 chr3L 15502425..15502688 312..575 1305 99.6 Plus
chr3L 24539361 chr3L 15502120..15502315 117..312 950 99 Plus
chr3L 24539361 chr3L 15501003..15501118 2..117 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15512796..15513205 573..982 2050 100 Plus
3L 28110227 3L 15512476..15512739 312..575 1305 99.6 Plus
3L 28110227 3L 15512171..15512366 117..312 965 99.5 Plus
3L 28110227 3L 15511054..15511169 2..117 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15505896..15506305 573..982 2050 100 Plus
3L 28103327 3L 15505576..15505839 312..575 1305 99.6 Plus
3L 28103327 3L 15505271..15505466 117..312 965 99.4 Plus
3L 28103327 3L 15504154..15504269 2..117 580 100 Plus
Blast to na_te.dros performed 2019-03-15 19:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 101..154 919..972 126 70.4 Plus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1583..1636 972..919 126 70.4 Minus

RH74182.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:29:02 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15502121..15502314 118..311 98 -> Plus
chr3L 15501001..15501118 1..117 99 -> Plus
chr3L 15502425..15502685 312..572 99 -> Plus
chr3L 15502745..15503111 573..939 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:13 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 1..741 67..807 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:06 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 1..741 67..807 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:11:44 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RG 1..786 67..852 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:54 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 1..741 67..807 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:32 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RG 1..786 67..852 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:44:36 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 2..979 2..979 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:06 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 2..979 2..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:11:44 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 1..980 1..979 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:55 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 2..979 2..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:32 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 1..980 1..979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:02 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15511052..15511169 1..117 99 -> Plus
3L 15512172..15512365 118..311 99 -> Plus
3L 15512476..15512736 312..572 99 -> Plus
3L 15512796..15513202 573..979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:02 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15511052..15511169 1..117 99 -> Plus
3L 15512172..15512365 118..311 99 -> Plus
3L 15512476..15512736 312..572 99 -> Plus
3L 15512796..15513202 573..979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:02 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15511052..15511169 1..117 99 -> Plus
3L 15512172..15512365 118..311 99 -> Plus
3L 15512476..15512736 312..572 99 -> Plus
3L 15512796..15513202 573..979 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:11:44 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15504152..15504269 1..117 99 -> Plus
arm_3L 15505272..15505465 118..311 99 -> Plus
arm_3L 15505576..15505836 312..572 99 -> Plus
arm_3L 15505896..15506302 573..979 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:16 Download gff for RH74182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505576..15505836 312..572 99 -> Plus
3L 15505896..15506302 573..979 100   Plus
3L 15504152..15504269 1..117 99 -> Plus
3L 15505272..15505465 118..311 99 -> Plus

RH74182.pep Sequence

Translation from 66 to 806

> RH74182.pep
MSLTITSSVTHPELKDLSTVRNEQKELNISPVHDVNVTKATATFGMGCFW
GAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEVLEIDYDPKVISF
KELLDLFWNNHEYGLTTPIKRQYASLILYHDEEQKQVAHASKLEEQERRA
PEIITTEIASKENFYPAEAYHQKYRLQGHKDLASSLNLSPKLLQTSYVAT
KLNGYLAGVGGIEQFKAEAETMGLTPTQRQYCYYHVEQNEGQGLYC*

RH74182.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23704-PA 246 GF23704-PA 1..246 1..246 1227 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15904-PA 246 GG15904-PA 1..246 1..246 1306 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14544-PA 246 GH14544-PA 1..246 1..246 1134 83.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Eip71CD-PA 246 CG7266-PA 1..246 1..246 1286 99.6 Plus
Eip71CD-PG 261 CG7266-PG 1..246 1..246 1286 99.6 Plus
Eip71CD-PB 242 CG7266-PB 1..242 1..246 1249 98 Plus
Eip71CD-PF 245 CG7266-PF 16..245 17..246 1207 99.6 Plus
Eip71CD-PE 239 CG7266-PE 11..239 18..246 1203 99.6 Plus
Eip71CD-PC 82 CG7266-PC 1..82 1..82 425 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13115-PA 246 GI13115-PA 1..246 1..246 1181 87.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24845-PA 246 GL24845-PA 1..246 1..246 1197 88.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20223-PA 246 GA20223-PA 1..246 1..246 1197 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25534-PA 246 GM25534-PA 1..246 1..246 1312 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14549-PA 246 GD14549-PA 1..246 1..246 1312 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13863-PA 246 GJ13863-PA 1..246 1..246 1165 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10595-PA 248 GK10595-PA 1..248 1..246 1166 87.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22245-PA 246 GE22245-PA 1..246 1..246 1302 98 Plus
Dyak\GE23149-PA 246 GE23149-PA 1..246 1..246 1302 98 Plus

RH74182.hyp Sequence

Translation from 66 to 806

> RH74182.hyp
MSLTITSSVTHPELKDLSTVRNEQKELNISPVHDVNVTKATATFGMGCFW
GAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEVLEIDYDPTVISF
KELLDLFWNNHEYGLTTPIKRQYASLILYHDEEQKQVAHASKLEEQERRA
PEIITTEIASKENFYPAEAYHQKYRLQGHKDLASSLNLSPKLLQTSYVAT
KLNGYLAGVGGIEQFKAEAETMGLTPTQRQYCYYHVEQNEGQGLYC*

RH74182.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Eip71CD-PA 246 CG7266-PA 1..246 1..246 1292 100 Plus
Eip71CD-PG 261 CG7266-PG 1..246 1..246 1292 100 Plus
Eip71CD-PB 242 CG7266-PB 1..242 1..246 1255 98.4 Plus
Eip71CD-PF 245 CG7266-PF 16..245 17..246 1213 100 Plus
Eip71CD-PE 239 CG7266-PE 11..239 18..246 1209 100 Plus