RH74240.complete Sequence
497 bp (497 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113644
> RH74240.complete
GGTTGGTATTGGGAGTTTTGTGGGCACTCTCCGCGGATGGTGCGCTTTGC
GGTGCACTTGTTACCCTCCTTCTTGAATGGGGCGGGGCAGCTCTTGGCCG
AAACAGTCATGGCGATGAGGGCCAAGATGAAGATGCCACGAACAGCTGTT
TGGTTTTTAGCCCTTAACCCGCTGCTTATGCCGGGCGGCTTTTTCCTCCC
AGTTGATGCGGTGGCAACCTCAGGCATTGACTTTGGTAAAATTGTGGCAC
GCCAAGCACATTTTGAAGCTCATCAGTAATACAGTTACACAGCGGGCCTC
CTCCGGGCGTTGAGGCGATGAGGGGGCGAGGCGGAGCACCGCCACCACCG
CCGCACTCTGCTGCCGTTATTACACGATGAGAAATAATGGTGAAACAATT
TAATAAAAACTCATAGATTTTAATAGTTAATAAGCGCTTAAATAAATGTT
AGACTTTCAAATCAGTAAAATGATTTCCAAAGAAAAAAAAAAAAAAA
RH74240.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31084-RA | 490 | CG31084-RA | 1..485 | 1..485 | 2425 | 100 | Plus |
CG34291.a | 273 | CG34291.a | 102..236 | 135..1 | 675 | 100 | Minus |
CG34291.b | 495 | CG34291.b | 102..236 | 135..1 | 675 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 22250974..22251173 | 135..334 | 1000 | 100 | Plus |
chr3R | 27901430 | chr3R | 22251264..22251413 | 333..482 | 750 | 100 | Plus |
chr3R | 27901430 | chr3R | 22248367..22248501 | 1..135 | 675 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26427961..26428160 | 135..334 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 26428251..26428403 | 333..485 | 765 | 100 | Plus |
3R | 32079331 | 3R | 26425354..26425488 | 1..135 | 675 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 26168792..26168991 | 135..334 | 1000 | 100 | Plus |
3R | 31820162 | 3R | 26169082..26169234 | 333..485 | 765 | 100 | Plus |
3R | 31820162 | 3R | 26166185..26166319 | 1..135 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 09:01:32 has no hits.
RH74240.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:02:09 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 22248367..22248501 | 1..135 | 100 | -> | Plus |
chr3R | 22250975..22251176 | 136..336 | 99 | -> | Plus |
chr3R | 22251268..22251413 | 337..482 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:15 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31084-RA | 1..243 | 37..279 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:37 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31084-RA | 1..243 | 37..279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:05:15 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31084-RA | 1..482 | 1..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:53:10 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34291-RA | 69..203 | 1..135 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:56 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34291-RA | 69..203 | 1..135 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:37 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31084-RA | 1..482 | 1..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:57:20 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34291-RA | 69..203 | 1..135 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:02:09 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26425354..26425488 | 1..135 | 100 | -> | Plus |
3R | 26427962..26428159 | 136..333 | 100 | -> | Plus |
3R | 26428252..26428400 | 334..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:02:09 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26425354..26425488 | 1..135 | 100 | -> | Plus |
3R | 26427962..26428159 | 136..333 | 100 | -> | Plus |
3R | 26428252..26428400 | 334..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:02:09 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26425354..26425488 | 1..135 | 100 | -> | Plus |
3R | 26427962..26428159 | 136..333 | 100 | -> | Plus |
3R | 26428252..26428400 | 334..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:56 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22251076..22251210 | 1..135 | 100 | -> | Plus |
arm_3R | 22253684..22253881 | 136..333 | 100 | -> | Plus |
arm_3R | 22253974..22254122 | 334..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:56 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22251076..22251210 | 1..135 | 100 | -> | Plus |
arm_3R | 22253684..22253881 | 136..333 | 100 | -> | Plus |
arm_3R | 22253974..22254122 | 334..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:18:06 Download gff for
RH74240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26166185..26166319 | 1..135 | 100 | -> | Plus |
3R | 26168793..26168990 | 136..333 | 100 | -> | Plus |
3R | 26169083..26169231 | 334..482 | 100 | | Plus |
RH74240.hyp Sequence
Translation from 0 to 278
> RH74240.hyp
GWYWEFCGHSPRMVRFAVHLLPSFLNGAGQLLAETVMAMRAKMKMPRTAV
WFLALNPLLMPGGFFLPVDAVATSGIDFGKIVARQAHFEAHQ*
Sequence RH74240.hyp has no blast hits.
RH74240.pep Sequence
Translation from 36 to 278
> RH74240.pep
MVRFAVHLLPSFLNGAGQLLAETVMAMRAKMKMPRTAVWFLALNPLLMPG
GFFLPVDAVATSGIDFGKIVARQAHFEAHQ*
RH74240.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG11474-PA | 69 | GG11474-PA | 1..69 | 1..80 | 280 | 75 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23666-PA | 41 | GE23666-PA | 1..37 | 1..37 | 150 | 83.8 | Plus |