Clone RH74717 Report

Search the DGRC for RH74717

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:747
Well:17
Vector:pFlc-1
Associated Gene/TranscriptCG11550-RA
Protein status:RH74717.pep: gold
Preliminary Size:897
Sequenced Size:1143

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11550 2002-01-01 Sim4 clustering to Release 2
CG11550 2003-01-01 Sim4 clustering to Release 3
CG11550 2005-05-18 Blastp of sequenced clone
CG11550 2008-04-29 Release 5.5 accounting
CG11550 2008-08-15 Release 5.9 accounting
CG11550 2008-12-18 5.12 accounting

Clone Sequence Records

RH74717.complete Sequence

1143 bp (1143 high quality bases) assembled on 2005-05-18

GenBank Submission: BT022706

> RH74717.complete
GATTCGAGAGTTGACCGCGCTCAATCGCGTTTCGGGCCAATTAGCGCAAC
AATCAGAAGTAAATCCTCGGCGCAGTCGACTACGATGAAGGAGGCCAACT
TGGAGGATCAGTATGCCAGTTTTCCGGAGATCAGGCGACCGGAGGTGCTG
AAATTTCTGGACTGGATCCACGCGCAGCCGCACATCTCGGATAGGTTTTC
CGAGGGCGAGGCACTGCACTTCTTTCACGCCTGCCGCTACAGCATGGAGG
TGGCCAAGCAGGTCCTGGACACCAATCTCACGGCCCGCACCCACCTGGAG
GAGTTCTTCGTGAACCTCGATTGCGAGCGGCCCGAGATCAGGCGCGCCAT
GCGAACAGTCTCTATTGTTCCCCTGCCAGGAGCCACTCCCGAAGGATACC
GGGTGATTCTCGCCAAGCTTGATGACCTGAATACCTCAAATTATAATTTT
GCAGATGTCATGAAGCTCTATTGCATGGTGTTTGACTTTTGGATGTATGA
AGATGGCATTCAGCCGGGACACGTTATTGTAATCGATCTGAAAAACACTT
CCTTGGGGCATGTAGCCCGCATTGGACTCTTGCAAATGAAGAAGTTCCTT
TACTACCTGCAGGAAGCGGCTGCCATCCGGTTGATAGGCTTTCACTTCAT
CAACATTGTACCGTTCATGGACAAGATTCTTGCGCTGATGACTCCGTTTA
TGAAAAAGGAACTGACCACTGTGCTCCATATGCACAGTGACCTAAAGGAA
TTCTACAAGTTTGTGCCCCAGGAAATGCTTCCCAAGGAATATGGTGGTCA
ACTGGAGGAGGCAAACGTGGCGAAAGAGATTTACTATAAGAAGTTGCTGG
ACAATCGAAAGGAAATGATCGAGTTTGAGACTCGCCACCAGGTGAACGAG
AAATTGCGACCCGGCAAGGCCAAGAATGCATCCGACTTATTCGGGATTGA
GGGAAACTTCAAGAAGTTGGATATCGATTAGGGCAAGGGCTCTACATTAT
TTTAGAAAATTGTTTTCTTTTACTGGTGTTTGATGACATAATTAAAGCGG
ACCGGATTCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RH74717.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11550.a 2193 CG11550.a 997..2059 2..1064 5300 99.9 Plus
CG11550-RA 1345 CG11550-RA 149..1211 2..1064 5300 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27501878..27502235 359..2 1775 99.7 Minus
chr3R 27901430 chr3R 27500502..27500738 1061..825 1185 100 Minus
chr3R 27901430 chr3R 27500786..27501002 826..610 1085 100 Minus
chr3R 27901430 chr3R 27501055..27501200 613..468 730 100 Minus
chr3R 27901430 chr3R 27501688..27501795 467..360 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:39:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31679523..31679880 359..2 1775 99.7 Minus
3R 32079331 3R 31678144..31678383 1064..825 1200 100 Minus
3R 32079331 3R 31678431..31678647 826..610 1085 100 Minus
3R 32079331 3R 31678700..31678845 613..468 730 100 Minus
3R 32079331 3R 31679333..31679440 467..360 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31420354..31420711 359..2 1775 99.7 Minus
3R 31820162 3R 31418975..31419214 1064..825 1200 100 Minus
3R 31820162 3R 31419262..31419478 826..610 1085 100 Minus
3R 31820162 3R 31419531..31419676 613..468 730 100 Minus
3R 31820162 3R 31420164..31420271 467..360 540 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:19:49 has no hits.

RH74717.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:20:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27500502..27500736 827..1061 100 <- Minus
chr3R 27500786..27500999 613..826 100 <- Minus
chr3R 27501056..27501200 468..612 100 <- Minus
chr3R 27501688..27501795 360..467 100 <- Minus
chr3R 27501878..27502235 1..359 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:22 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..897 85..981 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:01:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..897 85..981 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:25:38 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..897 85..981 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:42:16 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..897 85..981 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:23 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..897 85..981 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:45:45 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..980 2..981 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:01:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..980 2..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:25:38 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..1060 2..1061 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:42:17 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..980 2..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:23 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
CG11550-RA 1..1060 2..1061 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31679333..31679440 360..467 100 <- Minus
3R 31678431..31678644 613..826 100 <- Minus
3R 31678147..31678381 827..1061 100 <- Minus
3R 31678701..31678845 468..612 100 <- Minus
3R 31679523..31679880 1..359 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31679333..31679440 360..467 100 <- Minus
3R 31678431..31678644 613..826 100 <- Minus
3R 31678147..31678381 827..1061 100 <- Minus
3R 31678701..31678845 468..612 100 <- Minus
3R 31679523..31679880 1..359 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:46 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31679333..31679440 360..467 100 <- Minus
3R 31678431..31678644 613..826 100 <- Minus
3R 31678147..31678381 827..1061 100 <- Minus
3R 31678701..31678845 468..612 100 <- Minus
3R 31679523..31679880 1..359 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:25:38 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27503869..27504103 827..1061 100 <- Minus
arm_3R 27504153..27504366 613..826 100 <- Minus
arm_3R 27504423..27504567 468..612 100 <- Minus
arm_3R 27505055..27505162 360..467 100 <- Minus
arm_3R 27505245..27505602 1..359 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:21:19 Download gff for RH74717.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31418978..31419212 827..1061 100 <- Minus
3R 31419262..31419475 613..826 100 <- Minus
3R 31419532..31419676 468..612 100 <- Minus
3R 31420164..31420271 360..467 100 <- Minus
3R 31420354..31420711 1..359 99   Minus

RH74717.hyp Sequence

Translation from 3 to 980

> RH74717.hyp
SRVDRAQSRFGPISATIRSKSSAQSTTMKEANLEDQYASFPEIRRPEVLK
FLDWIHAQPHISDRFSEGEALHFFHACRYSMEVAKQVLDTNLTARTHLEE
FFVNLDCERPEIRRAMRTVSIVPLPGATPEGYRVILAKLDDLNTSNYNFA
DVMKLYCMVFDFWMYEDGIQPGHVIVIDLKNTSLGHVARIGLLQMKKFLY
YLQEAAAIRLIGFHFINIVPFMDKILALMTPFMKKELTTVLHMHSDLKEF
YKFVPQEMLPKEYGGQLEEANVAKEIYYKKLLDNRKEMIEFETRHQVNEK
LRPGKAKNASDLFGIEGNFKKLDID*

RH74717.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11550-PA 298 CG11550-PA 1..298 28..325 1563 100 Plus
CG2663-PC 308 CG2663-PC 17..308 42..325 441 32.4 Plus
CG2663-PA 308 CG2663-PA 17..308 42..325 441 32.4 Plus
CG12926-PA 313 CG12926-PA 22..313 35..325 349 29.9 Plus
CG3823-PA 295 CG3823-PA 22..295 53..325 340 26.7 Plus

RH74717.pep Sequence

Translation from 84 to 980

> RH74717.pep
MKEANLEDQYASFPEIRRPEVLKFLDWIHAQPHISDRFSEGEALHFFHAC
RYSMEVAKQVLDTNLTARTHLEEFFVNLDCERPEIRRAMRTVSIVPLPGA
TPEGYRVILAKLDDLNTSNYNFADVMKLYCMVFDFWMYEDGIQPGHVIVI
DLKNTSLGHVARIGLLQMKKFLYYLQEAAAIRLIGFHFINIVPFMDKILA
LMTPFMKKELTTVLHMHSDLKEFYKFVPQEMLPKEYGGQLEEANVAKEIY
YKKLLDNRKEMIEFETRHQVNEKLRPGKAKNASDLFGIEGNFKKLDID*

RH74717.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23257-PA 298 GF23257-PA 1..298 1..298 1419 87.2 Plus
Dana\GF17713-PA 308 GF17713-PA 36..308 26..298 452 33.9 Plus
Dana\GF12489-PA 311 GF12489-PA 19..311 7..298 364 28.7 Plus
Dana\GF12490-PA 308 GF12490-PA 29..308 20..298 344 31.1 Plus
Dana\GF25066-PA 311 GF25066-PA 18..311 8..298 320 28.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11860-PA 298 GG11860-PA 1..298 1..298 1535 95.6 Plus
Dere\GG11035-PA 308 GG11035-PA 36..308 26..298 450 33.2 Plus
Dere\GG25270-PA 313 GG25270-PA 18..313 2..298 364 30.7 Plus
Dere\GG19584-PA 295 GG19584-PA 22..295 26..298 349 27.4 Plus
Dere\GG15223-PA 311 GG15223-PA 17..311 7..298 329 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18936-PA 298 GH18936-PA 1..298 1..298 1353 80.9 Plus
Dgri\GH22617-PA 308 GH22617-PA 36..308 26..298 447 33.6 Plus
Dgri\GH15199-PA 308 GH15199-PA 37..308 27..298 362 30.7 Plus
Dgri\GH22856-PA 316 GH22856-PA 33..316 17..298 361 31.1 Plus
Dgri\GH15439-PA 324 GH15439-PA 26..324 3..298 331 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11550-PA 298 CG11550-PA 1..298 1..298 1563 100 Plus
CG2663-PC 308 CG2663-PC 17..308 15..298 441 32.4 Plus
CG2663-PA 308 CG2663-PA 17..308 15..298 441 32.4 Plus
CG12926-PA 313 CG12926-PA 22..313 8..298 349 29.9 Plus
CG3823-PA 295 CG3823-PA 22..295 26..298 340 26.7 Plus
CG30339-PA 308 CG30339-PA 23..308 15..298 322 31.2 Plus
CG33514-PA 311 CG33514-PA 17..311 7..298 322 27.5 Plus
CG33966-PA 310 CG33966-PA 29..310 20..298 312 28.2 Plus
CG3091-PC 303 CG3091-PC 32..280 27..257 289 25.3 Plus
CG3091-PA 303 CG3091-PA 32..280 27..257 289 25.3 Plus
CG3191-PC 309 CG3191-PC 22..288 7..263 272 24.3 Plus
CG3191-PA 309 CG3191-PA 22..288 7..263 272 24.3 Plus
CG10300-PA 311 CG10300-PA 11..311 2..298 267 23.8 Plus
CG10657-PA 334 CG10657-PA 49..334 16..298 237 25.8 Plus
CG31636-PB 313 CG31636-PB 35..313 26..298 235 26.1 Plus
CG31636-PA 313 CG31636-PA 35..313 26..298 235 26.1 Plus
CG33965-PA 317 CG33965-PA 34..317 20..298 195 20.8 Plus
CG5958-PA 294 CG5958-PA 35..262 15..240 173 24 Plus
CG10301-PB 306 CG10301-PB 14..306 7..298 162 19 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24455-PA 298 GI24455-PA 1..298 1..298 1324 79.2 Plus
Dmoj\GI23644-PA 308 GI23644-PA 36..308 26..298 455 34.3 Plus
Dmoj\GI21233-PA 313 GI21233-PA 30..313 17..298 347 30.4 Plus
Dmoj\GI16717-PA 308 GI16717-PA 37..308 27..298 343 30.9 Plus
Dmoj\GI21234-PA 308 GI21234-PA 25..308 17..298 338 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23532-PA 298 GL23532-PA 1..298 1..298 1393 84.2 Plus
Dper\GL22169-PA 308 GL22169-PA 36..308 26..298 425 33.6 Plus
Dper\GL17330-PA 311 GL17330-PA 39..311 27..298 345 31 Plus
Dper\GL17331-PA 308 GL17331-PA 35..308 26..298 323 30.1 Plus
Dper\GL16163-PA 311 GL16163-PA 13..311 3..298 305 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11062-PA 298 GA11062-PA 1..298 1..298 1388 83.9 Plus
Dpse\GA15415-PA 308 GA15415-PA 36..308 26..298 425 33.6 Plus
Dpse\GA11913-PA 311 GA11913-PA 39..311 27..298 349 31 Plus
Dpse\GA15770-PA 308 GA15770-PA 35..308 26..298 324 29.7 Plus
Dpse\GA28527-PA 311 GA28527-PA 18..311 8..298 309 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16424-PA 298 GM16424-PA 1..298 1..298 1588 99 Plus
Dsec\GM10638-PA 308 GM10638-PA 36..308 26..298 451 33.2 Plus
Dsec\GM20588-PA 313 GM20588-PA 22..313 8..298 367 31 Plus
Dsec\GM12480-PA 295 GM12480-PA 22..295 26..298 337 27.1 Plus
Dsec\GM20589-PA 308 GM20589-PA 23..308 15..298 328 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16370-PA 298 GD16370-PA 1..298 1..298 1588 99 Plus
Dsim\GD19620-PA 308 GD19620-PA 36..308 26..298 451 33.2 Plus
Dsim\GD13840-PA 311 GD13840-PA 17..311 7..298 324 28.2 Plus
Dsim\GD10061-PA 308 GD10061-PA 23..308 15..298 320 30.8 Plus
Dsim\GD16379-PA 303 GD16379-PA 32..262 27..239 306 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24121-PA 298 GJ24121-PA 1..298 1..298 1299 78.2 Plus
Dvir\GJ24720-PA 307 GJ24720-PA 35..307 26..298 452 33.9 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 13..308 3..298 363 29.3 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 24..316 7..298 355 30.2 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 12..310 3..298 331 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10975-PA 298 GK10975-PA 1..298 1..298 1388 84.2 Plus
Dwil\GK22841-PA 306 GK22841-PA 34..306 26..298 456 33.9 Plus
Dwil\GK15622-PA 313 GK15622-PA 41..313 27..298 368 31.6 Plus
Dwil\GK11682-PA 311 GK11682-PA 24..311 14..298 344 31.4 Plus
Dwil\GK15623-PA 309 GK15623-PA 36..309 26..298 342 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23308-PA 298 GE23308-PA 1..298 1..298 1562 97 Plus
Dyak\GE25285-PA 308 GE25285-PA 36..308 26..298 450 33.2 Plus
Dyak\GE22148-PA 313 GE22148-PA 22..313 8..298 365 31 Plus
Dyak\GE16743-PA 295 GE16743-PA 22..295 26..298 343 27.8 Plus
Dyak\GE21443-PA 311 GE21443-PA 17..311 7..298 338 28.2 Plus