BDGP Sequence Production Resources |
Search the DGRC for RH74790
Library: | RH |
Tissue Source: | Drosophila melanogaster adult head |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2001-04-30 |
Comments: | Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 747 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ela-RB |
Protein status: | RH74790.pep: gold |
Sequenced Size: | 1142 |
Gene | Date | Evidence |
---|---|---|
Ela-RB | 2010-11-11 | Gleaning Pick By Joe Carlson |
1142 bp assembled on 2010-12-06
GenBank Submission: BT125814.1
> RH74790.complete GAGTGTACCCAAAGACGCCATGTTAAGCAGGAGGGTCATCGCATTCGCCG CTCTGGCCCTCATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGG GACGAAAGTCAGGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCT GACGGGAGGCATTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATT CGCAACTTTATCCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCA ACTGGATCCATCGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGT ACGAGTGGCCAGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTC CTGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGA GGATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCC TGGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTC CTCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACT GGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCC AGCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAG CTGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCT GGAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGG CATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATT GGGACCATCATTTCTCGATGAACACCGAGTACAAGGAGGATGGCGTCCAC AAGGGACCATTTGGAGTGCTGAACAATCACAATGCCTTTGGCTATGGCAG TGGATATGGGGGCGGATACAACGGTGCCTTCAACTCGCCGGCCTACTGAA GCTGGCCGACATCATGGGTGGACCTCGGTGGTGGTGGTAGTGGTAATGGT GTTGGTGGGGCGTGAAGTAATCCGAGTCGTAGTCATAACTTCGCTGCTGC CTCCTTGGCCAGAGGCAGCTGTCTTTGCCTATCATCCTGTGTGTCCCTGC GAAATAAACTTGATTTCTGCACACCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20689196..20689889 | 433..1126 | 3470 | 100 | Plus |
chr3R | 27901430 | chr3R | 20688538..20688848 | 2..312 | 1555 | 100 | Plus |
chr3R | 27901430 | chr3R | 20688908..20689032 | 312..436 | 625 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24866010..24866705 | 433..1128 | 3480 | 100 | Plus |
3R | 32079331 | 3R | 24865352..24865662 | 2..312 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 24865722..24865846 | 312..436 | 625 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24606841..24607536 | 433..1128 | 3480 | 100 | Plus |
3R | 31820162 | 3R | 24606183..24606493 | 2..312 | 1555 | 100 | Plus |
3R | 31820162 | 3R | 24606553..24606677 | 312..436 | 625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20688537..20688847 | 1..311 | 99 | -> | Plus |
chr3R | 20688908..20689030 | 312..434 | 100 | -> | Plus |
chr3R | 20689198..20689889 | 435..1126 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 1..930 | 20..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 1..930 | 20..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 1..930 | 20..949 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 2..1126 | 2..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 2..1127 | 1..1126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ela-RB | 2..1127 | 1..1126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24865351..24865661 | 1..311 | 99 | -> | Plus |
3R | 24865722..24865844 | 312..434 | 100 | -> | Plus |
3R | 24866012..24866703 | 435..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24865351..24865661 | 1..311 | 99 | -> | Plus |
3R | 24865722..24865844 | 312..434 | 100 | -> | Plus |
3R | 24866012..24866703 | 435..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24865351..24865661 | 1..311 | 99 | -> | Plus |
3R | 24865722..24865844 | 312..434 | 100 | -> | Plus |
3R | 24866012..24866703 | 435..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20691073..20691383 | 1..311 | 99 | -> | Plus |
arm_3R | 20691444..20691566 | 312..434 | 100 | -> | Plus |
arm_3R | 20691734..20692425 | 435..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24606182..24606492 | 1..311 | 99 | -> | Plus |
3R | 24606553..24606675 | 312..434 | 100 | -> | Plus |
3R | 24606843..24607534 | 435..1126 | 100 | Plus |
Translation from 0 to 948
> RH74790.hyp SVPKDAMLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTL TGGITSSRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGV RVARGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSSSSGGYQSAGAVSPP GYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAYPGYPYPGVYLPQYP AYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVAGVPGAAGQAPATSG MNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGPFGVLNNHNAFGYGS GYGGGYNGAFNSPAY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ela-PB | 309 | CG7021-PB | 1..309 | 7..315 | 1684 | 100 | Plus |
Ela-PC | 329 | CG7021-PC | 1..329 | 7..315 | 1647 | 93.6 | Plus |
Ela-PA | 329 | CG7021-PA | 1..329 | 7..315 | 1647 | 93.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 356..548 | 72..256 | 175 | 34.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 356..559 | 72..256 | 166 | 33.3 | Plus |
Translation from 1 to 948
> RH74790.pep SVPKDAMLSRRVIAFAALALIQIASGQASQFSRDESQEDQKTEFNLASTL TGGITSSRHRQRANLNSQLYPGLGQLGSGYAGATGSIDDAHGHEQGGSGV RVARGHQIPAYPPPGFPGQQAPVPYPAAGGSSGGSSSSGGYQSAGAVSPP GYPVAGAVPAQYPVGVPPQQPVGAGAPGYFPGTGAYPGYPYPGVYLPQYP AYPQPAQFPAYGVLPGAVAQPGVPGVAGVPGAPGVAGVPGAAGQAPATSG MNYHRYPAHNPADPSHWDHHFSMNTEYKEDGVHKGPFGVLNNHNAFGYGS GYGGGYNGAFNSPAY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16999-PA | 290 | GF16999-PA | 1..287 | 7..312 | 694 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11330-PA | 349 | GG11330-PA | 12..349 | 1..315 | 1222 | 82.3 | Plus |
Dere\GG11329-PA | 167 | GG11329-PA | 12..81 | 1..83 | 292 | 75.9 | Plus |
Dere\GG11329-PA | 167 | GG11329-PA | 81..156 | 174..257 | 249 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17061-PA | 316 | GH17061-PA | 7..316 | 11..315 | 441 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Elal-PB | 309 | CG7021-PB | 1..309 | 7..315 | 1684 | 100 | Plus |
Elal-PC | 329 | CG7021-PC | 1..329 | 7..315 | 1647 | 93.6 | Plus |
Elal-PA | 329 | CG7021-PA | 1..329 | 7..315 | 1647 | 93.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 356..548 | 72..256 | 175 | 34.4 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 356..559 | 72..256 | 166 | 33.3 | Plus |
Sec24CD-PA | 1193 | CG10882-PA | 273..445 | 107..287 | 158 | 32.8 | Plus |
Sec24CD-PB | 1193 | CG10882-PB | 273..445 | 107..287 | 158 | 32.8 | Plus |
Sec24CD-PC | 1231 | CG10882-PC | 273..445 | 107..287 | 158 | 32.8 | Plus |
prc-PB | 1713 | CG5700-PB | 905..1091 | 52..243 | 155 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10571-PA | 266 | GI10571-PA | 21..266 | 28..315 | 321 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13939-PA | 298 | GL13939-PA | 1..298 | 7..315 | 503 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20038-PC | 307 | GA20038-PC | 1..307 | 7..315 | 495 | 53.2 | Plus |
Dpse\GA20038-PD | 328 | GA20038-PD | 1..328 | 7..315 | 488 | 50.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26638-PA | 244 | GM26638-PA | 59..244 | 139..315 | 737 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21140-PA | 262 | GD21140-PA | 48..262 | 106..315 | 808 | 88.6 | Plus |
Dsim\GD15184-PA | 159 | GD15184-PA | 12..159 | 1..128 | 560 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22927-PA | 68 | GJ22927-PA | 20..63 | 27..70 | 178 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22428-PA | 277 | GK22428-PA | 8..275 | 18..313 | 478 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23525-PA | 333 | GE23525-PA | 12..333 | 1..315 | 1198 | 84.7 | Plus |