BDGP Sequence Production Resources |
Search the DGRC for RT01008
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 10 |
Well: | 8 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG9879-RA |
Protein status: | RT01008.pep: gold |
Sequenced Size: | 1028 |
Gene | Date | Evidence |
---|---|---|
CG9879 | 2006-05-19 | RT target |
CG9879 | 2008-04-29 | Release 5.5 accounting |
CG9879 | 2008-08-15 | Release 5.9 accounting |
CG9879 | 2008-12-18 | 5.12 accounting |
1028 bp (1028 high quality bases) assembled on 2008-07-29
GenBank Submission: BT028812
> RT01008.complete GAAGTTATCAGTCGACATGGATTCCGTGATCAAAAGGTTTAAGGCGCTAA ACCACGGGGATGACTATGAGGAAAATGACGCACGATTTGATGGGGTCAAG TTGAAGGAAGGGACGTCAGCTAAACTATCCAGTCTGGATAAACTTTTTGA AGAACTCAAAATAAGTAAAGAAAGTTCAGCAAAAGAAGATTTGGTCACGG AGCCGATGAAGACGGAGAGTTACCTTTATAAGGATTACTTTAACAAGAGT CCCATCGATTTCCCGTGGGAGAAGGCCTATGAGAAGGGCAGTTCCCTGGG ACCCGACTTTTACATCGACTATGAGAACATCTTCGACAATGTGGCCAATC TTGCCGAAATAGAAGAAAAACTGGAATTGCACTTCAGACCCTTTACCTGT GTAATGGACTTCAACTGCCGTTTCAGTATGTACGAACTGTGCCTGCTGTT GGCCGAATCCCGATTCGATCCAAGTAGTCATCCCTCCGTGGTCGTGAAGA TCACCCATCCCTCTGCCCAGGTGAAGATCCATGCGGGTGGAAAGATTTCC TCCACCGCCTTGAACGCCGATTCTGCCAGAAGTGGTCTGTTCAAGGTGAT CAGGATCCTGCAGGATCTCGACTATAAGGTGGACATCATGAACTTCAGCA AGAACATCGTGAATGCCTCCTTCAGCATGCCATTCAAAATCGATTTGGAT CTGATGAGCCGCCGCCATGTGGTCGAGGTGGCCCAGAACAGGAGCCGGCG ACCCTTTATCACATACACCACCGAGAATTTGGGCGTGAGATTTGCCGTCT TTCCCACAGGATTCGTTTTGGTCCTTCACTCGACCAGTCACTGCGAGACA CGAGAGGCTATAGCCAACTTCCTGCCGATCCTGGCCAAACTCAAGAATGG ATATCCCACGGCAGAGGAGAAACTTGGACAACTGGTAGGGGATATTTCCT ACAAGTTGTTTTGGGAAAAGCAATTGGAAGACGACAAGGAGGGCATGTTG CTTTACTCTTAAAAGCTTTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9879-RA | 1147 | CG9879-RA | 82..1077 | 17..1012 | 4965 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rooA | 7621 | rooA ROOA_LTR 7621bp | 6973..7035 | 690..629 | 114 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2664930..2664989 | 12..72 | 96 | -> | Plus |
chr2L | 2665047..2665986 | 73..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 1..996 | 17..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 1..996 | 17..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 1..996 | 17..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 1..996 | 17..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 1..996 | 17..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 30..1029 | 12..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 30..1029 | 12..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 78..1077 | 12..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 30..1029 | 12..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9879-RA | 78..1077 | 12..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2665139..2665198 | 12..72 | 96 | -> | Plus |
2L | 2665256..2666195 | 73..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2665139..2665198 | 12..72 | 96 | -> | Plus |
2L | 2665256..2666195 | 73..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2665139..2665198 | 12..72 | 96 | -> | Plus |
2L | 2665256..2666195 | 73..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2665139..2665198 | 12..72 | 96 | -> | Plus |
arm_2L | 2665256..2666195 | 73..1012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2665256..2666195 | 73..1012 | 99 | Plus | |
2L | 2665139..2665198 | 12..72 | 96 | -> | Plus |
Translation from 1 to 1011
> RT01008.pep KLSVDMDSVIKRFKALNHGDDYEENDARFDGVKLKEGTSAKLSSLDKLFE ELKISKESSAKEDLVTEPMKTESYLYKDYFNKSPIDFPWEKAYEKGSSLG PDFYIDYENIFDNVANLAEIEEKLELHFRPFTCVMDFNCRFSMYELCLLL AESRFDPSSHPSVVVKITHPSAQVKIHAGGKISSTALNADSARSGLFKVI RILQDLDYKVDIMNFSKNIVNASFSMPFKIDLDLMSRRHVVEVAQNRSRR PFITYTTENLGVRFAVFPTGFVLVLHSTSHCETREAIANFLPILAKLKNG YPTAEEKLGQLVGDISYKLFWEKQLEDDKEGMLLYS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13882-PA | 327 | GF13882-PA | 1..327 | 6..336 | 887 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24871-PA | 334 | GG24871-PA | 1..334 | 6..336 | 1461 | 81.5 | Plus |
Dere\GG24500-PA | 251 | GG24500-PA | 23..246 | 106..330 | 357 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11160-PA | 371 | GH11160-PA | 136..371 | 101..336 | 765 | 56.4 | Plus |
Dgri\GH23390-PA | 259 | GH23390-PA | 27..252 | 106..326 | 331 | 29.8 | Plus |
Dgri\GH10573-PA | 149 | GH10573-PA | 27..129 | 106..208 | 156 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9879-PA | 331 | CG9879-PA | 1..331 | 6..336 | 1711 | 100 | Plus |
CG15398-PB | 305 | CG15398-PB | 77..296 | 106..326 | 335 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17871-PA | 444 | GI17871-PA | 199..444 | 91..336 | 804 | 56.1 | Plus |
Dmoj\GI22955-PA | 315 | GI22955-PA | 86..314 | 106..336 | 344 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26573-PA | 754 | GL26573-PA | 505..754 | 87..336 | 756 | 52.4 | Plus |
Dper\GL26452-PA | 240 | GL26452-PA | 12..235 | 106..330 | 410 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13701-PA | 240 | GA13701-PA | 12..240 | 106..335 | 410 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18355-PA | 330 | GM18355-PA | 1..330 | 6..336 | 1598 | 90 | Plus |
Dsec\GM18207-PA | 283 | GM18207-PA | 55..276 | 106..328 | 356 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23169-PA | 331 | GD23169-PA | 1..331 | 6..336 | 1621 | 90.6 | Plus |
Dsim\GD22812-PA | 283 | GD22812-PA | 55..276 | 106..328 | 342 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17371-PA | 512 | GJ17371-PA | 224..512 | 42..336 | 782 | 49.8 | Plus |
Dvir\GJ23502-PA | 298 | GJ23502-PA | 69..297 | 106..336 | 371 | 31.6 | Plus |
Translation from 12 to 1011
> RT01008.hyp QMDSVIKRFKALNHGDDYEENDARFDGVKLKEGTSAKLSSLDKLFEELKI SKESSAKEDLVTEPMKTESYLYKDYFNKSPIDFPWEKAYEKGSSLGPDFY IDYENIFDNVANLAEIEEKLELHFRPFTCVMDFNCRFSMYELCLLLAESR FDPSSHPSVVVKITHPSAQVKIHAGGKISSTALNADSARSGLFKVIRILQ DLDYKVDIMNFSKNIVNASFSMPFKIDLDLMSRRHVVEVAQNRSRRPFIT YTTENLGVRFAVFPTGFVLVLHSTSHCETREAIANFLPILAKLKNGYPTA EEKLGQLVGDISYKLFWEKQLEDDKEGMLLYS*