BDGP Sequence Production Resources |
Search the DGRC for RT01009
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 10 |
Well: | 9 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CrebB-RF |
Protein status: | RT01009.pep: gold |
Sequenced Size: | 890 |
Gene | Date | Evidence |
---|---|---|
CG6103 | 2006-05-19 | RT target |
CrebB-17A | 2008-04-29 | Release 5.5 accounting |
CrebB-17A | 2008-08-15 | Release 5.9 accounting |
CrebB-17A | 2008-12-18 | 5.12 accounting |
890 bp (890 high quality bases) assembled on 2008-07-29
GenBank Submission: BT028813
> RT01009.complete GAAGTTATCAGTCGACATGGACAACAGCATCGTCGAGGAGAACGGCAACT CGTCGGCGGCATCGGGCTCCAATGACGTGGTCGATGTCGTTGCCCAACAG GCGGCGGCAGCGGTGGGCGGCGGCGGTGGAGGAGGAGGAGGCGGCGGCGG TGGTAACCCCCAGCAGCAGCAACAGAACCCACAAAGTACAACGGCCGGCG GTCCAACGGGTGCGACGAACAACGCCCAGGGAGGCGGAGTGTCCTCCGTG CTGACCACCACCGCCAACTGCAACATACAATACCCCATCCAGACGCTGGC GCAGCACGGACTGCAGGTGCAGTCCGTGATACAGGCCAATCCCTCGGGAG TCATACAGACAGCAGCTGGAACCCAGCAGCAGCAACAGGCGCTGGCCGCC GCCACAGCGATGCAGAAGGTGGTCTACGTGGCCAAGCCGCCGAACTCGAC GGTCATCCACACGACGCCTGGCAATGCAGTGCAAGTGCGTAACAAAATCC CTCCAACCTTTCCGTGTAAGATCAAGCCCGAACCGAACACGCAGCACCCG GAGGACAGCGACGAGAGTCTGTCGGACGACGATTCCCAGCACCACCGCAG CGAGCTGACGCGACGGCCGTCGTACAATAAGATCTTCACCGAGATCAGCG GTCCGGACATGAGCGACAACAGCGGGATAGCGGAGGATCAGACCCGTAAG CGCGAGATCCGGCTGCAGAAGAACAGGGAGGCGGCGCGTGAGTGCCGGCG CAAGAAGAAGGAGTACATCAAGTGCCTGGAGAATCGAGTGGCGGTGCTAG AGAACCAAAACAAAGCGCTCATCGAGGAGCTGAAGTCGCTCAAGGAGCTC TACTGTCAGACCAAGAACGATTGAAAGCTTTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CrebB-17A.o | 2111 | CrebB-17A.o | 767..1627 | 15..875 | 4305 | 100 | Plus |
CrebB-17A.b | 2449 | CrebB-17A.b | 767..1627 | 15..875 | 4305 | 100 | Plus |
CrebB-17A-RE | 1095 | CrebB-17A-RE | 400..748 | 317..665 | 1745 | 100 | Plus |
CrebB-17A-RE | 1095 | CrebB-17A-RE | 14..318 | 15..319 | 1525 | 100 | Plus |
CrebB-17A-RE | 1095 | CrebB-17A-RE | 887..1095 | 666..874 | 1045 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18261308..18261612 | 15..319 | 1525 | 100 | Plus |
chrX | 22417052 | chrX | 18265021..18265231 | 665..875 | 1055 | 100 | Plus |
chrX | 22417052 | chrX | 18262207..18262390 | 313..496 | 920 | 100 | Plus |
chrX | 22417052 | chrX | 18262464..18262632 | 497..665 | 845 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18372131..18372435 | 15..319 | 1525 | 100 | Plus |
X | 23542271 | X | 18375842..18376052 | 665..875 | 1055 | 100 | Plus |
X | 23542271 | X | 18373030..18373213 | 313..496 | 920 | 100 | Plus |
X | 23542271 | X | 18373287..18373455 | 497..665 | 845 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18380229..18380533 | 15..319 | 1525 | 100 | Plus |
X | 23527363 | X | 18383940..18384150 | 665..875 | 1055 | 100 | Plus |
X | 23527363 | X | 18381128..18381311 | 313..496 | 920 | 100 | Plus |
X | 23527363 | X | 18381385..18381553 | 497..665 | 845 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7001 | 161..392 | 140 | 59.2 | Plus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7876..8008 | 558..689 | 112 | 60.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18261447..18261609 | 154..316 | 100 | -> | Plus |
chrX | 18262211..18262390 | 317..496 | 100 | -> | Plus |
chrX | 18262464..18262632 | 497..665 | 100 | -> | Plus |
chrX | 18265022..18265231 | 666..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..858 | 17..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..858 | 17..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-RF | 1..858 | 17..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..858 | 17..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-RF | 1..858 | 17..874 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..873 | 1..874 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..873 | 1..874 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-RF | 295..1165 | 3..875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-17A-RH | 1..873 | 1..874 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CrebB-RF | 437..1307 | 3..875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18372121..18372432 | 3..316 | 98 | -> | Plus |
X | 18373034..18373213 | 317..496 | 100 | -> | Plus |
X | 18373287..18373455 | 497..665 | 100 | -> | Plus |
X | 18375843..18376052 | 666..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18372121..18372432 | 3..316 | 98 | -> | Plus |
X | 18373034..18373213 | 317..496 | 100 | -> | Plus |
X | 18373287..18373455 | 497..665 | 100 | -> | Plus |
X | 18375843..18376052 | 666..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18372121..18372432 | 3..316 | 98 | -> | Plus |
X | 18373034..18373213 | 317..496 | 100 | -> | Plus |
X | 18373287..18373455 | 497..665 | 100 | -> | Plus |
X | 18375843..18376052 | 666..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18266154..18266465 | 3..316 | 98 | -> | Plus |
arm_X | 18267067..18267246 | 317..496 | 100 | -> | Plus |
arm_X | 18267320..18267488 | 497..665 | 100 | -> | Plus |
arm_X | 18269876..18270085 | 666..875 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18380219..18380530 | 3..316 | 98 | -> | Plus |
X | 18381132..18381311 | 317..496 | 100 | -> | Plus |
X | 18381385..18381553 | 497..665 | 100 | -> | Plus |
X | 18383941..18384150 | 666..875 | 100 | Plus |
Translation from 1 to 873
> RT01009.pep KLSVDMDNSIVEENGNSSAASGSNDVVDVVAQQAAAAVGGGGGGGGGGGG GNPQQQQQNPQSTTAGGPTGATNNAQGGGVSSVLTTTANCNIQYPIQTLA QHGLQVQSVIQANPSGVIQTAAGTQQQQQALAAATAMQKVVYVAKPPNST VIHTTPGNAVQVRNKIPPTFPCKIKPEPNTQHPEDSDESLSDDDSQHHRS ELTRRPSYNKIFTEISGPDMSDNSGIAEDQTRKREIRLQKNREAARECRR KKKEYIKCLENRVAVLENQNKALIEELKSLKELYCQTKND*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22432-PA | 203 | GF22432-PA | 9..203 | 140..290 | 626 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19161-PA | 330 | GG19161-PA | 1..330 | 6..290 | 997 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17726-PA | 376 | GH17726-PA | 70..248 | 63..221 | 495 | 67.7 | Plus |
Dgri\GH17726-PA | 376 | GH17726-PA | 307..376 | 221..290 | 356 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CrebB-PF | 285 | CG6103-PF | 1..285 | 6..290 | 1471 | 100 | Plus |
CrebB-PP | 281 | CG6103-PP | 1..281 | 6..290 | 1436 | 98.6 | Plus |
CrebB-PO | 281 | CG6103-PO | 1..281 | 6..290 | 1436 | 98.6 | Plus |
CrebB-PJ | 281 | CG6103-PJ | 1..281 | 6..290 | 1436 | 98.6 | Plus |
CrebB-PQ | 331 | CG6103-PQ | 1..331 | 6..290 | 1409 | 85.8 | Plus |
CrebB-PN | 327 | CG6103-PN | 1..327 | 6..290 | 1374 | 84.6 | Plus |
CrebB-PI | 327 | CG6103-PI | 1..327 | 6..290 | 1374 | 84.6 | Plus |
CrebB-PG | 327 | CG6103-PG | 1..327 | 6..290 | 1374 | 84.6 | Plus |
CrebB-PM | 296 | CG6103-PM | 1..220 | 6..225 | 1129 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15475-PA | 365 | GI15475-PA | 1..365 | 6..290 | 808 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26969-PA | 323 | GL26969-PA | 1..323 | 6..290 | 850 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22328-PA | 318 | GA22328-PA | 1..318 | 6..290 | 900 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22894-PA | 310 | GM22894-PA | 31..310 | 55..290 | 972 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17392-PA | 315 | GD17392-PA | 1..310 | 6..271 | 1253 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19187-PA | 242 | GJ19187-PA | 1..224 | 6..221 | 464 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20005-PA | 337 | GK20005-PA | 76..337 | 83..290 | 738 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17723-PA | 324 | GE17723-PA | 1..324 | 6..290 | 1012 | 81 | Plus |
Translation from 3 to 873
> RT01009.hyp RIGNMDNSIVEENGNSSAASGSNDVVDVVAQQAAAAVGGGGGGGGGGGGG NPQQQQQNPQSTTAGGPTGATNNAQGGGVSSVLTTTANCNIQYPIQTLAQ HGLQVQSVIQANPSGVIQTAAGTQQQQQALAAATAMQKVVYVAKPPNSTV IHTTPGNAVQVRNKIPPTFPCKIKPEPNTQHPEDSDESLSDDDSQHHRSE LTRRPSYNKIFTEISGPDMSDNSGIAEDQTRKREIRLQKNREAARECRRK KKEYIKCLENRVAVLENQNKALIEELKSLKELYCQTKND*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CrebB-PF | 285 | CG6103-PF | 1..285 | 5..289 | 1471 | 100 | Plus |
CrebB-PP | 281 | CG6103-PP | 1..281 | 5..289 | 1436 | 98.6 | Plus |
CrebB-PO | 281 | CG6103-PO | 1..281 | 5..289 | 1436 | 98.6 | Plus |
CrebB-PJ | 281 | CG6103-PJ | 1..281 | 5..289 | 1436 | 98.6 | Plus |
CrebB-PN | 327 | CG6103-PN | 1..327 | 5..289 | 1374 | 84.6 | Plus |