Clone RT01015 Report

Search the DGRC for RT01015

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:15
Vector:pCR2.1
Associated Gene/Transcriptfd3F-RB
Protein status:RT01015.pep: wuzgold
Sequenced Size:1108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12632 2006-05-19 RT target
fd3F 2008-04-29 Release 5.5 accounting
fd3F 2008-08-15 Release 5.9 accounting
fd3F 2008-12-18 5.12 accounting

Clone Sequence Records

RT01015.complete Sequence

1108 bp (1108 high quality bases) assembled on 2008-07-29

GenBank Submission: BT025862

> RT01015.complete
TCAGTCGACATGTGGCTGAAATCCAAAACCAACCACCGCAAAACAAGCAG
GCCAAAGAAACCACCGTTCACCTACACGGAGCTCATCGAATACGCCCTCG
AGGATAAGGGTGAGCTGACTGTGTCGGGCATATACCAATGGATATCCGAT
CGTTTCCCCTACTACAAGTCGAATGATGACCGCTGGAAGAACTCCGTTCG
ACATAATCTATCGATTAACCCACATTTTCGGAAGGGAGTTAAAGCGCCCC
AAGGAGCCGGTCACCTGTGGGCCATTTCCAGCGGAGATTCCGCCGAGAAT
GTTCTGGCCTGGGAGCATAAGAAGCAGCGGCTGGATTTGTTCTTCAAAAT
GGAGTCGATTAACCGTGAGCGTATACAGCAGCATCAGCAACAGCAGCAAC
TGCAGCAGCATCAGCAGCAACACCAGCAGCACTCGCCGCAACAGAAACAA
CATTCGGCGGCACAGCAGCAACATATGCCACAGGCCAGTAGCTGCATGTA
CGATGAGGCGGCGGTGGCAGTTGCTACTCTCACCCAGGAAATGATGCAGA
CTAACAGCGGCGGTGGCAGCACTGAGACAAGCCAGCAGCAGCAGCAGCAG
CAGCAGCATCACCACCACCACAGCCACCAGAATCACCAAAATCACAATCA
ACACCACCAAAGACTGCTGCCCTTCAACGATCTGTTGAGCGACGATGAGC
TGCGAAAGACGGCGGGTCAAATACTGAATGGCATCCATCGCGAGGTGGAA
GTACAGTCGGTCAACTCTATCATCAGCACCTACCACGATGTCCTGTTGGA
TAATGACTATTTGAATCCCATACACAAGGACGTGGTTGTTACGGAAAGTG
TCCTACGGCAGCAGCATGGCACCAACTTGGGCGGAGGCAATAACAACCAA
AATAACCAAATGGGCGGCAATAGCCACATGGGTGGCGGCAACTCGCAGTA
CTACATCACCGAAATTGATCCCATGGAGCTCGGCATTCAGATGTCGCACC
AAGTGGAGCCCTCCGAGGAGGAAGTACTCTTCAGCGACGAGTTCAACCTT
AACTACTTTGGCTATAATCCGGGTAGCGATATCGTCGCTTGAAAGCTTTA
TCGACCAT

RT01015.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-RB 1651 fd3F-RB 485..1567 10..1092 5400 99.9 Plus
Crg-1-RB 1297 Crg-1-RB 481..617 10..146 685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3703039..3703526 315..805 2300 98.4 Plus
chrX 22417052 chrX 3703607..3703894 805..1092 1440 100 Plus
chrX 22417052 chrX 3702810..3702981 147..318 860 100 Plus
chrX 22417052 chrX 3688488..3688624 10..146 685 100 Plus
chrX 22417052 chrX 3697581..3697717 10..146 685 100 Plus
chrU 10048995 chrU 6019112..6019194 146..64 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CR42205-RA 763 CR42205-RA 1..83 64..146 415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3809651..3810141 315..805 2425 99.6 Plus
X 23542271 X 3810222..3810509 805..1092 1440 100 Plus
X 23542271 X 3809422..3809593 147..318 860 100 Plus
X 23542271 X 3795092..3795228 10..146 685 100 Plus
X 23542271 X 3804185..3804321 10..146 685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3817749..3818239 315..805 2425 99.5 Plus
X 23527363 X 3818320..3818607 805..1092 1440 100 Plus
X 23527363 X 3817520..3817691 147..318 860 100 Plus
X 23527363 X 3812283..3812419 10..146 685 100 Plus
X 23527363 X 3803190..3803326 10..146 685 100 Plus
Blast to na_te.dros performed 2019-03-16 17:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7030 372..683 330 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2549 375..608 301 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2557 375..654 294 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2666 375..660 288 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6975 395..668 275 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7059 376..665 265 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..7027 376..659 259 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6922 376..483 233 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2714..2998 368..653 219 59.6 Plus
roo 9092 roo DM_ROO 9092bp 1030..1113 346..431 200 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2994 417..664 193 57.9 Plus
roo 9092 roo DM_ROO 9092bp 1047..1156 390..506 181 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2572..2860 371..676 178 55.9 Plus

RT01015.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:19:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3697576..3697717 2..146 97 -> Plus
chrX 3702810..3702981 147..318 100 -> Plus
chrX 3703043..3703526 319..805 98 -> Plus
chrX 3703608..3703898 806..1096 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:39 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1083 10..1092 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1083 10..1092 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:58 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1188..2235 44..1092 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:03 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1083 10..1092 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:49 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1188..2235 44..1092 99   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 21:39:53 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
CR42205-RA 1..95 64..157 94   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:02 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1083 10..1092 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 480..1571 2..1096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:58 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2480 44..1096 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:03 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1083 10..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:49 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2480 44..1096 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
X 3810223..3810513 806..1096 99   Plus
X 3809655..3810141 319..805 99 -> Plus
X 3804180..3804321 2..146 97 -> Plus
X 3809422..3809593 147..318 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
X 3810223..3810513 806..1096 99   Plus
X 3809655..3810141 319..805 99 -> Plus
X 3804180..3804321 2..146 97 -> Plus
X 3809422..3809593 147..318 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:09 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
X 3810223..3810513 806..1096 99   Plus
X 3809655..3810141 319..805 99 -> Plus
X 3804180..3804321 2..146 97 -> Plus
X 3809422..3809593 147..318 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:58 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3698213..3698354 2..146 97 -> Plus
arm_X 3703455..3703626 147..318 100 -> Plus
arm_X 3703688..3704174 319..805 99 -> Plus
arm_X 3704256..3704546 806..1096 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:37:38 Download gff for RT01015.complete
Subject Subject Range Query Range Percent Splice Strand
X 3817753..3818239 319..805 99 -> Plus
X 3818321..3818611 806..1096 99   Plus
X 3812278..3812419 2..146 97 -> Plus
X 3817520..3817691 147..318 100 -> Plus

RT01015.pep Sequence

Translation from 0 to 1091

> RT01015.pep
SVDMWLKSKTNHRKTSRPKKPPFTYTELIEYALEDKGELTVSGIYQWISD
RFPYYKSNDDRWKNSVRHNLSINPHFRKGVKAPQGAGHLWAISSGDSAEN
VLAWEHKKQRLDLFFKMESINRERIQQHQQQQQLQQHQQQHQQHSPQQKQ
HSAAQQQHMPQASSCMYDEAAVAVATLTQEMMQTNSGGGSTETSQQQQQQ
QQHHHHHSHQNHQNHNQHHQRLLPFNDLLSDDELRKTAGQILNGIHREVE
VQSVNSIISTYHDVLLDNDYLNPIHKDVVVTESVLRQQHGTNLGGGNNNQ
NNQMGGNSHMGGGNSQYYITEIDPMELGIQMSHQVEPSEEEVLFSDEFNL
NYFGYNPGSDIVA*

RT01015.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22092-PA 327 GF22092-PA 193..327 221..363 571 84 Plus
Dana\GF22092-PA 327 GF22092-PA 81..174 12..105 529 100 Plus
Dana\GF25022-PA 371 GF25022-PA 74..181 3..114 198 39.5 Plus
Dana\GF15038-PA 350 GF15038-PA 130..240 19..130 197 39.7 Plus
Dana\GF21122-PA 1236 GF21122-PA 660..735 20..92 193 50 Plus
Dana\GF16437-PA 491 GF16437-PA 181..297 10..127 190 37.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18672-PA 359 GG18672-PA 1..359 5..363 1439 89 Plus
Dere\GG18013-PA 250 GG18013-PA 50..197 20..158 203 35.3 Plus
Dere\GG24971-PA 323 GG24971-PA 120..230 19..130 197 39.7 Plus
Dere\GG15176-PA 364 GG15176-PA 88..181 17..114 194 43 Plus
Dere\GG17614-PA 1274 GG17614-PA 688..763 20..92 194 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17913-PA 297 GH17913-PA 2..98 10..106 548 100 Plus
Dgri\GH17913-PA 297 GH17913-PA 106..297 177..363 545 64.3 Plus
Dgri\GH11193-PA 340 GH11193-PA 113..235 7..130 204 38.3 Plus
Dgri\GH12836-PA 1346 GH12836-PA 744..819 20..92 200 51.3 Plus
Dgri\GH12162-PA 368 GH12162-PA 88..169 16..92 198 48.8 Plus
Dgri\GH15773-PA 350 GH15773-PA 89..182 17..114 195 41 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-PC 744 CG44123-PC 399..744 18..363 1861 100 Plus
Crg-1-PB 114 CG32788-PB 1..50 4..53 253 94 Plus
fkh-PD 510 CG10002-PD 200..412 10..213 229 29.8 Plus
fkh-PB 510 CG10002-PB 200..412 10..213 229 29.8 Plus
fkh-PA 510 CG10002-PA 200..412 10..213 229 29.8 Plus
fkh-PE 518 CG10002-PE 200..412 10..213 229 29.8 Plus
fkh-PC 692 CG10002-PC 200..412 10..213 229 29.8 Plus
fd19B-PA 260 CG9571-PA 58..245 20..226 222 30.8 Plus
slp1-PA 322 CG16738-PA 116..294 16..209 208 33 Plus
FoxL1-PB 365 CG1132-PB 88..232 17..168 196 33.1 Plus
FoxL1-PA 365 CG1132-PA 88..232 17..168 196 33.1 Plus
CHES-1-like-PC 1267 CG12690-PC 700..775 20..92 183 50 Plus
CHES-1-like-PD 1268 CG12690-PD 700..775 20..92 183 50 Plus
CHES-1-like-PB 1268 CG12690-PB 700..775 20..92 183 50 Plus
CHES-1-like-PA 1268 CG12690-PA 700..775 20..92 183 50 Plus
croc-PA 508 CG5069-PA 70..419 20..330 180 22.9 Plus
fd96Ca-PB 372 CG11921-PB 6..89 13..92 176 44 Plus
fd96Ca-PA 372 CG11921-PA 6..89 13..92 176 44 Plus
slp2-PA 451 CG2939-PA 163..263 7..101 171 39.6 Plus
odd-PA 392 CG3851-PA 73..174 120..224 168 38 Plus
fd102C-PA 599 CG11152-PA 129..203 20..92 168 44 Plus
jumu-PA 719 CG4029-PA 411..648 20..265 162 24 Plus
fd59A-PA 456 CG3668-PA 85..161 20..92 160 44.2 Plus
bin-PA 676 CG18647-PA 301..394 10..97 156 36.8 Plus
CG32006-PA 443 CG32006-PA 140..281 14..173 153 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16052-PA 754 GI16052-PA 407..754 18..363 1162 70.3 Plus
Dmoj\GI14920-PA 1307 GI14920-PA 714..789 20..92 202 52.6 Plus
Dmoj\GI12553-PA 349 GI12553-PA 76..169 17..114 200 43 Plus
Dmoj\GI10909-PA 413 GI10909-PA 92..168 20..92 198 49.4 Plus
Dmoj\GI18113-PA 342 GI18113-PA 123..233 19..130 197 39.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26743-PA 806 GL26743-PA 460..806 18..363 1228 74.8 Plus
Dper\GL16060-PA 369 GL16060-PA 61..168 3..114 200 39.5 Plus
Dper\GL18682-PA 342 GL18682-PA 131..241 19..130 197 39.7 Plus
Dper\GL14605-PA 1270 GL14605-PA 683..758 20..92 193 50 Plus
Dper\GL15821-PA 347 GL15821-PA 76..152 20..92 189 47.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23037-PA 354 GA23037-PA 1..354 7..363 1276 75.7 Plus
Dpse\GA10915-PA 377 GA10915-PA 69..176 3..114 200 39.5 Plus
Dpse\GA14117-PA 347 GA14117-PA 136..246 19..130 197 39.7 Plus
Dpse\GA27773-PA 1263 GA27773-PA 674..874 20..225 195 28.5 Plus
Dpse\GA23375-PA 338 GA23375-PA 76..152 20..92 189 47.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12307-PA 353 GM12307-PA 1..353 4..363 1824 95.8 Plus
Dsec\GM16234-PA 46 GM16234-PA 1..46 4..49 247 100 Plus
Dsec\GM22695-PA 256 GM22695-PA 58..134 20..92 201 48.8 Plus
Dsec\GM18442-PA 322 GM18442-PA 119..229 19..130 197 39.7 Plus
Dsec\GM14607-PA 368 GM14607-PA 88..181 17..114 195 43 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16653-PA 72 GD16653-PA 34..72 11..49 218 100 Plus
Dsim\GD15555-PA 254 GD15555-PA 56..132 20..92 201 48.8 Plus
Dsim\GD23260-PA 322 GD23260-PA 119..229 19..130 197 39.7 Plus
Dsim\GD13797-PA 368 GD13797-PA 88..181 17..114 194 43 Plus
Dsim\GD18028-PA 510 GD18028-PA 200..316 10..127 190 37.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15628-PA 732 GJ15628-PA 409..732 18..363 1143 73.7 Plus
Dvir\GJ18953-PA 1224 GJ18953-PA 649..724 20..92 202 52.6 Plus
Dvir\GJ16300-PA 343 GJ16300-PA 127..237 19..130 199 39.7 Plus
Dvir\GJ15456-PA 348 GJ15456-PA 82..175 17..114 197 43 Plus
Dvir\GJ18555-PA 394 GJ18555-PA 80..224 20..169 191 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25470-PA 392 GK25470-PA 27..392 12..363 1183 73.6 Plus
Dwil\GK15483-PA 346 GK15483-PA 139..249 19..130 196 39.7 Plus
Dwil\GK17509-PA 413 GK17509-PA 102..192 17..97 193 42.9 Plus
Dwil\GK10997-PA 652 GK10997-PA 169..285 10..127 192 37.9 Plus
Dwil\GK25667-PA 343 GK25667-PA 79..155 20..92 189 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16312-PA 734 GE16312-PA 397..734 18..363 1329 89.6 Plus
Dyak\GE18262-PA 324 GE18262-PA 120..230 19..130 197 39.7 Plus
Dyak\GE17344-PA 269 GE17344-PA 54..130 20..92 195 47.5 Plus
Dyak\GE21395-PA 362 GE21395-PA 88..181 17..114 194 43 Plus
Dyak\GE17515-PA 1252 GE17515-PA 683..758 20..92 193 50 Plus

RT01015.hyp Sequence

Translation from 3 to 1091

> RT01015.hyp
PMWLKSKTNHRKTSRPKKPPFTYTELIEYALEDKGELTVSGIYQWISDRF
PYYKSNDDRWKNSVRHNLSINPHFRKGVKAPQGAGHLWAISSGDSAENVL
AWEHKKQRLDLFFKMESINRERIQQHQQQQQLQQHQQQHQQHSPQQKQHS
AAQQQHMPQASSCMYDEAAVAVATLTQEMMQTNSGGGSTETSQQQQQQQQ
HHHHHSHQNHQNHNQHHQRLLPFNDLLSDDELRKTAGQILNGIHREVEVQ
SVNSIISTYHDVLLDNDYLNPIHKDVVVTESVLRQQHGTNLGGGNNNQNN
QMGGNSHMGGGNSQYYITEIDPMELGIQMSHQVEPSEEEVLFSDEFNLNY
FGYNPGSDIVA*

RT01015.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-PC 744 CG44123-PC 399..744 16..361 1861 100 Plus
Crg-1-PB 114 CG32788-PB 1..50 2..51 253 94 Plus
fkh-PD 510 CG10002-PD 200..412 8..211 229 29.8 Plus
fkh-PB 510 CG10002-PB 200..412 8..211 229 29.8 Plus
fd19B-PA 260 CG9571-PA 58..245 18..224 222 30.8 Plus