Clone RT01023 Report

Search the DGRC for RT01023

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:23
Vector:pCR2.1
Associated Gene/TranscriptNeu2-RA
Protein status:RT01023.pep: gold
Sequenced Size:1172

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7204 2006-05-19 RT target
Neu2 2008-04-29 Release 5.5 accounting
Neu2 2008-08-15 Release 5.9 accounting
Neu2 2008-12-18 5.12 accounting

Clone Sequence Records

RT01023.complete Sequence

1172 bp (1172 high quality bases) assembled on 2008-07-29

GenBank Submission: BT028817

> RT01023.complete
GAAGTTATCAGTCGACATGGCCAGTGTTTTCGATGAGTCTCATGAACCGG
GCCTATCCATTGCGTACATAATATACAAGTGCACCGGCTGGCAAGTTGAG
AAGCACGATCCACTGTCCAACACCATATGCAAGTCCTGTCTGGAGGATGC
GCAGAATGCATTCGATATCATAGAAACGTACGAGAGAAGTCACCAGTTTT
ACCGCTTCCTCAAGGATGTACGGGAGGAGGAGAGTGAAAATGATGGATCC
GGATGCTCAGAAGAAGTGGAGGCAGCTGAGAGGGATCTCCAGGATGGTGC
CGACGACGTCGATTCCGGCAATGAACCTGATATTAACGAATGTGATATCA
AGGCCAAGGAGAAACCAGGCTTTAGCTGTTCTCACTGCCCTAAATCTTTT
CAAGTAAAATCAAATCTGAAGGTACACATGCGTTCACACACAGGAGAACG
TCCCTTCACGTGTTCCCTCTGCCCCAAGTCCTTTGGCTATAGCTCTGGTC
TTCAGAATCACATGCGAACCCACACAGGAGAACGACCCTTCCAGTGCTCG
CATTGCCCAAGGTCCTTTACAGCTGGGCACCACCTCAAGGCCCACATACA
GATGCACGAAAGAAGAGGATCGTTAAGGTGCCCATACTGCCAAAAGTGCT
TTCTAACTTCTTTAATTCTCAAGCAGCATTTGGCCACGCACACTGATGAA
ACGCAGTTCAAGTGTTCCCAGTGCTCGAAGTCCTTTCAAGTCGAACATGA
ACTTTGGATGCACATGCGGGTGCACCAAGAACGCCTCTTTACTTGTGGCC
ATTGCTCAAAGGACTTTGCGCTACATGCGTATCTCAAGCGACACCTGTCA
AGGAACGCGAGATGCTCTCAAAGCTCAAAAGCATCTGCTCACAAAACACT
AGGCCACTCAAAGGCACTTAAGTGTGGTAAGTGCCCAAAAACTTTCACTG
ACCGTTCGGCTCTGTCCACTCACTTGAAATCACACACCAAAAATAAGCCA
TTGCTCGAAGGTCCTTGCAAATCTTCAGGATCTAAGCCGGCACATAGTAA
CGCACAAAGAAAACCGTTTAAGTGTTCCAGCTGCCCAAGGACTTTTTCGC
GGAAATCCGCACTGCTAACACACTTGCAAACCCACACAGGAAAACTGGGC
ACAAATCGCATGTAGAAGCTTT

RT01023.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-RA 1149 Neu2-RA 1..1149 17..1165 5730 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21477785..21478936 1168..17 5745 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21488850..21490001 1168..17 5745 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21481950..21483101 1168..17 5745 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 02:42:39 has no hits.

RT01023.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:43:31 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21477781..21478936 17..1172 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:46 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:08 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:50 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:00 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:55 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:00 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:08 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 13..1164 17..1168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:50 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 157..1308 17..1168 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:00 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 1..1149 17..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:55 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 157..1308 17..1168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:31 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21488846..21490001 17..1172 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:31 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21488846..21490001 17..1172 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:31 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21488846..21490001 17..1172 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:50 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21481946..21483101 17..1172 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:37:36 Download gff for RT01023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21481946..21483101 17..1172 99   Minus

RT01023.pep Sequence

Translation from 1 to 1164

> RT01023.pep
KLSVDMASVFDESHEPGLSIAYIIYKCTGWQVEKHDPLSNTICKSCLEDA
QNAFDIIETYERSHQFYRFLKDVREEESENDGSGCSEEVEAAERDLQDGA
DDVDSGNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGER
PFTCSLCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQ
MHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHE
LWMHMRVHQERLFTCGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTL
GHSKALKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSN
AQRKPFKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM*

RT01023.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15824-PA 738 GF15824-PA 282..541 103..378 371 32 Plus
Dana\GF20022-PA 182 GF20022-PA 7..182 120..295 352 39.5 Plus
Dana\GF10403-PA 578 GF10403-PA 322..578 125..385 351 31.5 Plus
Dana\GF20022-PA 182 GF20022-PA 1..174 143..330 348 39.2 Plus
Dana\GF23400-PA 940 GF23400-PA 278..556 122..380 348 32.6 Plus
Dana\GF23400-PA 940 GF23400-PA 394..640 126..379 332 33.6 Plus
Dana\GF10403-PA 578 GF10403-PA 261..513 122..378 329 31 Plus
Dana\GF23400-PA 940 GF23400-PA 420..674 124..381 329 32.1 Plus
Dana\GF15255-PA 327 GF15255-PA 1..324 6..301 329 29.9 Plus
Dana\GF23400-PA 940 GF23400-PA 478..697 126..376 314 32 Plus
Dana\GF20022-PA 182 GF20022-PA 1..173 171..379 310 33.8 Plus
Dana\GF10403-PA 578 GF10403-PA 234..485 126..380 309 29.3 Plus
Dana\GF23400-PA 940 GF23400-PA 192..473 96..381 287 28.3 Plus
Dana\GF10403-PA 578 GF10403-PA 374..572 120..329 278 31 Plus
Dana\GF15824-PA 738 GF15824-PA 407..542 124..259 258 37.5 Plus
Dana\GF23400-PA 940 GF23400-PA 562..698 126..257 199 36.5 Plus
Dana\GF23400-PA 940 GF23400-PA 617..698 124..201 178 46.3 Plus
Dana\GF15255-PA 327 GF15255-PA 169..308 232..378 176 31.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13232-PA 308 GG13232-PA 1..301 6..293 1002 66.7 Plus
Dere\GG25008-PA 615 GG25008-PA 297..610 19..325 449 34.7 Plus
Dere\GG20117-PA 369 GG20117-PA 14..347 5..286 443 35 Plus
Dere\GG18916-PA 506 GG18916-PA 107..390 115..381 423 36.4 Plus
Dere\GG18916-PA 506 GG18916-PA 87..362 124..381 410 36.5 Plus
Dere\GG13562-PA 298 GG13562-PA 15..298 5..260 404 35.1 Plus
Dere\GG18916-PA 506 GG18916-PA 167..474 120..381 391 34.3 Plus
Dere\GG18916-PA 506 GG18916-PA 252..495 123..374 373 34 Plus
Dere\GG18916-PA 506 GG18916-PA 306..495 121..324 357 39.6 Plus
Dere\GG18916-PA 506 GG18916-PA 337..499 124..285 343 46 Plus
Dere\GG25008-PA 615 GG25008-PA 120..288 77..233 270 37.9 Plus
Dere\GG25008-PA 615 GG25008-PA 376..588 161..381 263 30.3 Plus
Dere\GG25008-PA 615 GG25008-PA 150..290 120..263 262 38.9 Plus
Dere\GG18916-PA 506 GG18916-PA 86..278 207..381 241 36.6 Plus
Dere\GG13562-PA 298 GG13562-PA 159..296 206..378 221 32 Plus
Dere\GG18916-PA 506 GG18916-PA 417..499 120..206 212 47.1 Plus
Dere\GG20117-PA 369 GG20117-PA 265..364 121..220 202 40 Plus
Dere\GG20117-PA 369 GG20117-PA 175..321 209..381 192 29.3 Plus
Dere\GG13562-PA 298 GG13562-PA 163..271 265..381 171 34.4 Plus
Dere\GG25008-PA 615 GG25008-PA 150..288 233..381 164 29.9 Plus
Dere\GG13232-PA 308 GG13232-PA 132..270 207..382 163 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10681-PA 355 GH10681-PA 12..354 3..382 422 31.6 Plus
Dgri\GH13680-PA 384 GH13680-PA 12..379 3..328 386 28.2 Plus
Dgri\GH10788-PA 338 GH10788-PA 89..282 120..325 364 39.6 Plus
Dgri\GH10428-PA 799 GH10428-PA 297..544 124..378 358 32.3 Plus
Dgri\GH17091-PA 444 GH17091-PA 262..429 119..284 340 42.4 Plus
Dgri\GH10788-PA 338 GH10788-PA 119..284 119..284 335 40.7 Plus
Dgri\GH10788-PA 338 GH10788-PA 70..282 128..375 330 33.9 Plus
Dgri\GH17091-PA 444 GH17091-PA 263..433 149..331 292 37.1 Plus
Dgri\GH10788-PA 338 GH10788-PA 75..260 163..381 265 28.7 Plus
Dgri\GH13680-PA 384 GH13680-PA 238..384 116..263 250 34.5 Plus
Dgri\GH10428-PA 799 GH10428-PA 293..519 176..381 226 30.3 Plus
Dgri\GH17091-PA 444 GH17091-PA 268..405 210..381 174 28.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-PA 382 CG7204-PA 1..382 6..387 2100 100 Plus
Neu2-PB 308 CG7204-PB 1..303 6..308 1673 100 Plus
CG15436-PA 346 CG15436-PA 11..341 2..325 529 33.9 Plus
CG5245-PA 501 CG5245-PA 103..385 116..381 482 35.4 Plus
CG5245-PA 501 CG5245-PA 77..357 119..381 478 34.8 Plus
CG5245-PA 501 CG5245-PA 216..492 119..376 461 35.3 Plus
crol-PG 878 CG14938-PG 302..581 120..379 452 34.2 Plus
CG5245-PA 501 CG5245-PA 58..327 135..379 446 35.8 Plus
crol-PC 756 CG14938-PC 185..459 126..379 434 33.5 Plus
crol-PB 891 CG14938-PB 391..665 126..379 434 33.5 Plus
crol-PI 962 CG14938-PI 391..665 126..379 434 33.5 Plus
crol-PE 962 CG14938-PE 391..665 126..379 434 33.5 Plus
crol-PA 962 CG14938-PA 391..665 126..379 434 33.5 Plus
crol-PG 878 CG14938-PG 275..524 122..379 430 33.6 Plus
CG44002-PA 345 CG44002-PA 12..333 3..257 427 31 Plus
CG17612-PA 618 CG17612-PA 194..533 3..378 427 30.8 Plus
CG17612-PB 618 CG17612-PB 194..533 3..378 427 30.8 Plus
crol-PD 878 CG14938-PD 302..581 120..379 425 33.5 Plus
crol-PF 907 CG14938-PF 275..553 122..379 425 32.6 Plus
Meics-PB 571 CG8474-PB 262..508 126..378 424 33.2 Plus
Meics-PA 583 CG8474-PA 274..520 126..378 424 33.2 Plus
crol-PB 891 CG14938-PB 302..581 120..380 423 34.2 Plus
crol-PI 962 CG14938-PI 302..581 120..380 423 34.2 Plus
crol-PE 962 CG14938-PE 302..581 120..380 423 34.2 Plus
crol-PA 962 CG14938-PA 302..581 120..380 423 34.2 Plus
Meics-PB 571 CG8474-PB 312..570 120..381 423 31.5 Plus
Meics-PA 583 CG8474-PA 324..582 120..381 423 31.5 Plus
crol-PH 686 CG14938-PH 185..460 126..379 422 33.3 Plus
crol-PD 878 CG14938-PD 275..524 122..379 421 33.6 Plus
crol-PB 891 CG14938-PB 275..553 122..380 420 31.9 Plus
crol-PI 962 CG14938-PI 275..553 122..380 420 31.9 Plus
crol-PE 962 CG14938-PE 275..553 122..380 420 31.9 Plus
crol-PA 962 CG14938-PA 275..553 122..380 420 31.9 Plus
crol-PF 907 CG14938-PF 420..644 126..381 408 33.1 Plus
CG12299-PA 736 CG12299-PA 254..501 124..378 405 32.3 Plus
crol-PG 878 CG14938-PG 391..638 126..376 395 32.7 Plus
crol-PD 878 CG14938-PD 391..638 126..376 386 32.7 Plus
crol-PB 891 CG14938-PB 475..683 126..365 385 33.2 Plus
crol-PH 686 CG14938-PH 270..478 126..365 385 33.2 Plus
crol-PF 907 CG14938-PF 245..526 120..380 384 30.9 Plus
crol-PC 756 CG14938-PC 295..495 124..333 380 35.4 Plus
crol-PI 962 CG14938-PI 501..701 124..333 380 35.4 Plus
crol-PE 962 CG14938-PE 501..701 124..333 380 35.4 Plus
crol-PA 962 CG14938-PA 501..701 124..333 380 35.4 Plus
Kr-h1-PA 791 CG45074-PA 175..414 82..333 376 32.9 Plus
Kr-h1-PB 845 CG45074-PB 229..468 82..333 376 32.9 Plus
crol-PG 878 CG14938-PG 223..497 126..380 369 31.6 Plus
CG11247-PC 522 CG11247-PC 51..346 70..381 367 29 Plus
CG11247-PA 522 CG11247-PA 51..346 70..381 367 29 Plus
CG11247-PB 522 CG11247-PB 51..346 70..381 367 29 Plus
cg-PC 629 CG8367-PC 91..358 75..380 367 29.9 Plus
cg-PA 671 CG8367-PA 133..400 75..380 367 29.9 Plus
cg-PD 671 CG8367-PD 133..400 75..380 367 29.9 Plus
cg-PF 770 CG8367-PF 226..493 75..380 367 29.9 Plus
cg-PB 772 CG8367-PB 234..501 75..380 367 29.9 Plus
cg-PI 773 CG8367-PI 234..501 75..380 367 29.9 Plus
cg-PM 780 CG8367-PM 241..508 75..380 367 29.9 Plus
cg-PJ 825 CG8367-PJ 234..501 75..380 367 29.9 Plus
cg-PL 837 CG8367-PL 246..513 75..380 367 29.9 Plus
Meics-PB 571 CG8474-PB 367..571 119..332 365 33.9 Plus
Meics-PA 583 CG8474-PA 379..583 119..332 365 33.9 Plus
CG11247-PC 522 CG11247-PC 150..400 124..376 365 31.8 Plus
CG11247-PA 522 CG11247-PA 150..400 124..376 365 31.8 Plus
CG11247-PB 522 CG11247-PB 150..400 124..376 365 31.8 Plus
crol-PF 907 CG14938-PF 223..498 126..380 360 30.1 Plus
su(Hw)-PC 941 CG8573-PC 409..617 120..327 360 31.3 Plus
su(Hw)-PB 941 CG8573-PB 409..617 120..327 360 31.3 Plus
su(Hw)-PA 941 CG8573-PA 409..617 120..327 360 31.3 Plus
CG5245-PA 501 CG5245-PA 332..493 124..284 359 42.6 Plus
crol-PC 756 CG14938-PC 179..402 148..379 359 33.5 Plus
crol-PD 878 CG14938-PD 223..497 126..380 358 31.6 Plus
cg-PK 665 CG8367-PK 125..393 75..380 355 29.8 Plus
cg-PN 686 CG8367-PN 140..408 75..380 355 29.8 Plus
CG32772-PE 520 CG32772-PE 95..351 86..378 354 28.6 Plus
CG32772-PC 520 CG32772-PC 95..351 86..378 354 28.6 Plus
crol-PB 891 CG14938-PB 223..470 126..381 349 30.4 Plus
crol-PI 962 CG14938-PI 223..470 126..381 349 30.4 Plus
crol-PE 962 CG14938-PE 223..470 126..381 349 30.4 Plus
crol-PA 962 CG14938-PA 223..470 126..381 349 30.4 Plus
crol-PH 686 CG14938-PH 179..403 148..379 348 33.3 Plus
crol-PF 907 CG14938-PF 448..667 126..326 348 34.5 Plus
pita-PB 623 CG3941-PB 226..446 124..378 347 32.4 Plus
pita-PA 683 CG3941-PA 286..506 124..378 347 32.4 Plus
crol-PB 891 CG14938-PB 501..683 124..315 346 35.6 Plus
crol-PH 686 CG14938-PH 296..478 124..315 346 35.6 Plus
CG32772-PE 520 CG32772-PE 99..357 74..334 332 29.3 Plus
CG32772-PC 520 CG32772-PC 99..357 74..334 332 29.3 Plus
pita-PB 623 CG3941-PB 254..477 124..332 332 29.9 Plus
pita-PA 683 CG3941-PA 314..537 124..332 332 29.9 Plus
CG32772-PF 374 CG32772-PF 13..211 124..334 329 33 Plus
CG32772-PD 374 CG32772-PD 13..211 124..334 329 33 Plus
CG17328-PA 413 CG17328-PA 34..348 23..338 327 29 Plus
CG17328-PB 382 CG17328-PB 1..317 18..338 326 29.8 Plus
CTCF-PA 818 CG8591-PA 294..569 124..375 324 27.9 Plus
Meics-PB 571 CG8474-PB 59..453 34..381 323 24.1 Plus
CG8319-PA 383 CG8319-PA 12..368 3..374 323 24.5 Plus
dwg-PA 592 CG2711-PA 258..523 73..378 321 26.9 Plus
CG6654-PA 639 CG6654-PA 433..618 116..304 317 36.3 Plus
CTCF-PA 818 CG8591-PA 319..609 121..378 312 27.1 Plus
prg-PB 558 CG9233-PB 240..490 112..328 312 28.8 Plus
CG15436-PA 346 CG15436-PA 126..319 180..381 311 31.6 Plus
CG32772-PF 374 CG32772-PF 3..205 142..378 303 29.9 Plus
CG32772-PD 374 CG32772-PD 3..205 142..378 303 29.9 Plus
prg-PB 558 CG9233-PB 30..440 8..382 303 24.5 Plus
crol-PF 907 CG14938-PF 223..443 154..381 302 28.8 Plus
pita-PB 623 CG3941-PB 308..499 122..326 301 30 Plus
pita-PA 683 CG3941-PA 368..559 122..326 301 30 Plus
crol-PG 878 CG14938-PG 417..640 124..285 297 30.8 Plus
Meics-PA 583 CG8474-PA 242..465 154..381 297 30.1 Plus
crol-PD 878 CG14938-PD 447..640 126..285 295 34 Plus
crol-PF 907 CG14938-PF 476..669 126..285 295 34 Plus
CG12299-PA 736 CG12299-PA 367..575 124..360 293 30 Plus
CG5245-PA 501 CG5245-PA 75..273 201..381 290 32.5 Plus
dwg-PA 592 CG2711-PA 333..529 124..334 290 28.3 Plus
CG6654-PA 639 CG6654-PA 454..604 110..260 290 35.8 Plus
su(Hw)-PC 941 CG8573-PC 311..572 116..375 276 25.5 Plus
su(Hw)-PB 941 CG8573-PB 311..572 116..375 276 25.5 Plus
su(Hw)-PA 941 CG8573-PA 311..572 116..375 276 25.5 Plus
pita-PB 623 CG3941-PB 226..417 152..379 274 29.7 Plus
pita-PA 683 CG3941-PA 286..477 152..379 274 29.7 Plus
crol-PG 878 CG14938-PG 223..414 154..381 273 27.5 Plus
CG6654-PA 639 CG6654-PA 324..549 147..381 271 27.9 Plus
dwg-PA 592 CG2711-PA 385..525 120..260 264 34 Plus
CG32772-PF 374 CG32772-PF 34..235 116..285 260 34.3 Plus
CG32772-PD 374 CG32772-PD 34..235 116..285 260 34.3 Plus
crol-PC 756 CG14938-PC 176..347 173..380 256 28.2 Plus
pita-PB 623 CG3941-PB 226..391 180..381 245 30 Plus
pita-PA 683 CG3941-PA 286..451 180..381 245 30 Plus
crol-PC 756 CG14938-PC 381..518 126..258 244 36.2 Plus
crol-PI 962 CG14938-PI 587..724 126..258 244 36.2 Plus
crol-PE 962 CG14938-PE 587..724 126..258 244 36.2 Plus
crol-PA 962 CG14938-PA 587..724 126..258 244 36.2 Plus
crol-PH 686 CG14938-PH 176..348 173..380 244 28.1 Plus
Kr-h1-PA 791 CG45074-PA 137..413 121..382 244 25 Plus
Kr-h1-PB 845 CG45074-PB 191..467 121..382 244 25 Plus
CG6654-PA 639 CG6654-PA 329..577 124..381 243 25.9 Plus
CG17612-PA 618 CG17612-PA 385..580 117..300 236 28.6 Plus
CG17612-PB 618 CG17612-PB 385..580 117..300 236 28.6 Plus
pita-PB 623 CG3941-PB 334..498 119..282 235 31.1 Plus
pita-PA 683 CG3941-PA 394..558 119..282 235 31.1 Plus
Meics-PA 583 CG8474-PA 59..408 34..380 232 26.6 Plus
su(Hw)-PC 941 CG8573-PC 181..494 87..381 227 25 Plus
su(Hw)-PB 941 CG8573-PB 181..494 87..381 227 25 Plus
su(Hw)-PA 941 CG8573-PA 181..494 87..381 227 25 Plus
dwg-PA 592 CG2711-PA 304..498 151..381 227 26.2 Plus
CG6654-PA 639 CG6654-PA 321..492 228..380 225 31.4 Plus
CTCF-PA 818 CG8591-PA 404..631 120..307 224 25.3 Plus
crol-PD 878 CG14938-PD 219..414 206..381 221 28.1 Plus
CG11247-PC 522 CG11247-PC 265..404 124..270 219 32 Plus
CG11247-PA 522 CG11247-PA 265..404 124..270 219 32 Plus
CG11247-PB 522 CG11247-PB 265..404 124..270 219 32 Plus
crol-PG 878 CG14938-PG 219..386 206..381 216 31.1 Plus
CG11247-PC 522 CG11247-PC 208..405 124..288 216 26.8 Plus
CG11247-PA 522 CG11247-PA 208..405 124..288 216 26.8 Plus
CG11247-PB 522 CG11247-PB 208..405 124..288 216 26.8 Plus
Neu2-PB 308 CG7204-PB 111..259 199..384 214 30.5 Plus
CG8319-PA 383 CG8319-PA 291..376 120..206 214 44.8 Plus
CG32772-PE 520 CG32772-PE 245..378 124..255 212 31.1 Plus
CG32772-PC 520 CG32772-PC 245..378 124..255 212 31.1 Plus
crol-PF 907 CG14938-PF 219..412 206..379 205 26.8 Plus
crol-PC 756 CG14938-PC 436..518 124..202 204 45.8 Plus
crol-PI 962 CG14938-PI 642..724 124..202 204 45.8 Plus
crol-PE 962 CG14938-PE 642..724 124..202 204 45.8 Plus
crol-PA 962 CG14938-PA 642..724 124..202 204 45.8 Plus
crol-PD 878 CG14938-PD 558..640 124..202 204 45.8 Plus
crol-PF 907 CG14938-PF 587..669 124..202 204 45.8 Plus
crol-PB 891 CG14938-PB 219..414 206..381 203 26 Plus
crol-PI 962 CG14938-PI 219..414 206..381 203 26 Plus
crol-PE 962 CG14938-PE 219..414 206..381 203 26 Plus
crol-PA 962 CG14938-PA 219..414 206..381 203 26 Plus
crol-PC 756 CG14938-PC 184..320 209..381 201 28.7 Plus
crol-PH 686 CG14938-PH 184..321 209..381 200 28.6 Plus
CG17612-PA 618 CG17612-PA 289..443 209..379 184 28.5 Plus
CG17612-PB 618 CG17612-PB 289..443 209..379 184 28.5 Plus
CG32772-PE 520 CG32772-PE 272..381 123..230 179 35.1 Plus
CG32772-PC 520 CG32772-PC 272..381 123..230 179 35.1 Plus
cg-PK 665 CG8367-PK 163..281 228..381 177 30.8 Plus
cg-PN 686 CG8367-PN 178..296 228..381 177 30.8 Plus
CG17612-PA 618 CG17612-PA 445..584 124..254 168 26.9 Plus
CG17612-PB 618 CG17612-PB 445..584 124..254 168 26.9 Plus
CG32772-PE 520 CG32772-PE 133..272 238..383 163 28.4 Plus
CG32772-PC 520 CG32772-PC 133..272 238..383 163 28.4 Plus
CG12299-PA 736 CG12299-PA 246..393 228..382 158 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11127-PA 384 GI11127-PA 16..382 4..379 439 30.7 Plus
Dmoj\GI17965-PA 403 GI17965-PA 12..401 3..379 386 26.8 Plus
Dmoj\GI17965-PA 403 GI17965-PA 149..403 69..331 375 34.4 Plus
Dmoj\GI17300-PA 323 GI17300-PA 79..272 120..325 360 39.6 Plus
Dmoj\GI23506-PA 777 GI23506-PA 301..549 124..379 359 32.2 Plus
Dmoj\GI13598-PA 345 GI13598-PA 15..328 6..283 345 31.6 Plus
Dmoj\GI17300-PA 323 GI17300-PA 109..274 119..284 328 40.1 Plus
Dmoj\GI23506-PA 777 GI23506-PA 329..598 124..329 276 28.9 Plus
Dmoj\GI17300-PA 323 GI17300-PA 78..250 176..381 263 30 Plus
Dmoj\GI13598-PA 345 GI13598-PA 220..336 120..236 244 40.7 Plus
Dmoj\GI23506-PA 777 GI23506-PA 297..523 176..381 225 29.8 Plus
Dmoj\GI13598-PA 345 GI13598-PA 169..331 210..379 190 30.9 Plus
Dmoj\GI11127-PA 384 GI11127-PA 154..272 238..381 153 28.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26275-PA 880 GL26275-PA 288..665 8..381 529 35.2 Plus
Dper\GL20489-PA 360 GL20489-PA 15..358 6..331 498 35.7 Plus
Dper\GL20485-PA 318 GL20485-PA 7..284 6..285 457 37.9 Plus
Dper\GL20492-PA 419 GL20492-PA 15..378 6..378 457 32.8 Plus
Dper\GL16049-PA 324 GL16049-PA 13..322 2..331 450 35.8 Plus
Dper\GL26275-PA 880 GL26275-PA 5..270 20..316 441 35.6 Plus
Dper\GL26275-PA 880 GL26275-PA 521..864 120..382 398 31.9 Plus
Dper\GL26275-PA 880 GL26275-PA 89..257 177..381 288 34.5 Plus
Dper\GL26275-PA 880 GL26275-PA 728..847 103..226 242 39.5 Plus
Dper\GL20489-PA 360 GL20489-PA 112..274 201..381 193 27 Plus
Dper\GL20485-PA 318 GL20485-PA 124..294 209..387 191 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26117-PA 423 GA26117-PA 9..419 8..379 515 32.1 Plus
Dpse\GA25545-PB 362 GA25545-PB 15..360 6..331 505 36.5 Plus
Dpse\GA28105-PA 389 GA28105-PA 84..386 3..335 467 35.8 Plus
Dpse\GA25549-PA 308 GA25549-PA 13..308 2..317 459 35.2 Plus
Dpse\GA25534-PA 412 GA25534-PA 13..399 2..383 451 32 Plus
Dpse\GA26117-PA 423 GA26117-PA 281..420 120..260 296 46.1 Plus
Dpse\GA28105-PA 389 GA28105-PA 185..382 177..382 291 33 Plus
Dpse\GA25545-PB 362 GA25545-PB 112..276 201..381 195 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22138-PA 239 GM22138-PA 1..210 6..215 977 85.2 Plus
Dsec\GM18478-PA 345 GM18478-PA 11..340 2..325 455 33.3 Plus
Dsec\GM24032-PA 495 GM24032-PA 133..413 120..381 432 38.7 Plus
Dsec\GM18162-PA 418 GM18162-PA 1..414 6..381 427 29.7 Plus
Dsec\GM24032-PA 495 GM24032-PA 216..469 119..381 417 39.9 Plus
Dsec\GM24032-PA 495 GM24032-PA 103..385 116..381 396 36.8 Plus
Dsec\GM18163-PA 325 GM18163-PA 1..313 6..257 395 32.2 Plus
Dsec\GM24032-PA 495 GM24032-PA 82..327 152..379 355 37.2 Plus
Dsec\GM24032-PA 495 GM24032-PA 301..493 121..327 324 38 Plus
Dsec\GM24032-PA 495 GM24032-PA 332..494 124..285 308 42.3 Plus
Dsec\GM24032-PA 495 GM24032-PA 269..493 116..377 306 32.3 Plus
Dsec\GM24032-PA 495 GM24032-PA 75..273 201..381 219 32 Plus
Dsec\GM18478-PA 345 GM18478-PA 125..262 236..381 194 32.7 Plus
Dsec\GM22138-PA 239 GM22138-PA 111..212 199..315 159 38.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12116-PA 360 GD12116-PA 1..305 6..310 1343 82.6 Plus
Dsim\GD22772-PA 392 GD22772-PA 1..392 6..381 451 32.2 Plus
Dsim\GD18833-PA 438 GD18833-PA 70..350 120..381 431 38.7 Plus
Dsim\GD18833-PA 438 GD18833-PA 153..430 119..377 427 38.9 Plus
Dsim\GD22773-PA 325 GD22773-PA 1..313 6..257 394 31.2 Plus
Dsim\GD18833-PA 438 GD18833-PA 9..322 111..381 384 34.1 Plus
Dsim\GD12643-PA 575 GD12643-PA 316..574 120..381 370 31.9 Plus
Dsim\GD12643-PA 575 GD12643-PA 266..512 126..378 367 33.2 Plus
Dsim\GD18833-PA 438 GD18833-PA 269..431 124..285 320 44.2 Plus
Dsim\GD12643-PA 575 GD12643-PA 371..575 119..332 313 33.9 Plus
Dsim\GD12643-PA 575 GD12643-PA 185..457 77..381 249 26.6 Plus
Dsim\GD12116-PA 360 GD12116-PA 111..253 199..378 186 31.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11385-PA 430 GJ11385-PA 11..410 3..378 438 31.6 Plus
Dvir\GJ17256-PA 695 GJ17256-PA 471..693 124..378 427 36.2 Plus
Dvir\GJ17144-PA 321 GJ17144-PA 3..316 3..307 396 32.4 Plus
Dvir\GJ15680-PA 297 GJ15680-PA 68..279 92..325 370 37.9 Plus
Dvir\GJ16305-PA 405 GJ16305-PA 156..403 86..331 369 33.8 Plus
Dvir\GJ15680-PA 297 GJ15680-PA 116..281 119..284 333 40.7 Plus
Dvir\GJ17256-PA 695 GJ17256-PA 39..304 88..385 316 27.3 Plus
Dvir\GJ17256-PA 695 GJ17256-PA 524..690 120..282 307 37.5 Plus
Dvir\GJ17256-PA 695 GJ17256-PA 433..668 149..381 284 29.6 Plus
Dvir\GJ15680-PA 297 GJ15680-PA 84..257 175..381 262 30.3 Plus
Dvir\GJ17256-PA 695 GJ17256-PA 111..313 120..294 246 31.5 Plus
Dvir\GJ17144-PA 321 GJ17144-PA 127..300 205..380 210 30.8 Plus
Dvir\GJ11385-PA 430 GJ11385-PA 137..309 208..381 202 32.1 Plus
Dvir\GJ11385-PA 430 GJ11385-PA 137..283 236..387 173 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13252-PA 418 GK13252-PA 44..365 15..281 386 31.2 Plus
Dwil\GK10434-PA 367 GK10434-PA 99..335 120..381 371 36.1 Plus
Dwil\GK14669-PA 673 GK14669-PA 265..521 116..378 362 34.2 Plus
Dwil\GK13252-PA 418 GK13252-PA 234..396 123..286 350 43.3 Plus
Dwil\GK14973-PA 1011 GK14973-PA 400..645 126..379 350 35.6 Plus
Dwil\GK14973-PA 1011 GK14973-PA 284..563 122..381 349 31.8 Plus
Dwil\GK10434-PA 367 GK10434-PA 49..296 126..379 347 34.2 Plus
Dwil\GK14973-PA 1011 GK14973-PA 426..702 124..379 335 33.2 Plus
Dwil\GK14973-PA 1011 GK14973-PA 512..736 126..381 334 33.1 Plus
Dwil\GK14669-PA 673 GK14669-PA 302..528 124..335 319 33 Plus
Dwil\GK17128-PA 549 GK17128-PA 175..426 121..374 317 32 Plus
Dwil\GK17128-PA 549 GK17128-PA 123..374 126..381 301 30.2 Plus
Dwil\GK14973-PA 1011 GK14973-PA 540..759 126..326 286 34.5 Plus
Dwil\GK14973-PA 1011 GK14973-PA 232..479 126..381 286 30.4 Plus
Dwil\GK10434-PA 367 GK10434-PA 187..356 124..282 277 36.5 Plus
Dwil\GK14669-PA 673 GK14669-PA 274..468 152..381 267 30.3 Plus
Dwil\GK10434-PA 367 GK10434-PA 12..240 119..381 240 28.7 Plus
Dwil\GK14669-PA 673 GK14669-PA 440..527 120..208 211 44.9 Plus
Dwil\GK14973-PA 1011 GK14973-PA 624..760 126..257 199 36.5 Plus
Dwil\GK14973-PA 1011 GK14973-PA 679..760 124..201 179 46.3 Plus
Dwil\GK14973-PA 1011 GK14973-PA 228..395 206..381 168 28.4 Plus
Dwil\GK13252-PA 418 GK13252-PA 207..316 263..381 153 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18294-PA 346 GE18294-PA 15..345 6..331 515 36.3 Plus
Dyak\GE18295-PA 346 GE18295-PA 12..341 3..325 472 33.7 Plus
Dyak\GE26193-PA 537 GE26193-PA 163..474 116..381 472 38.3 Plus
Dyak\GE26193-PA 537 GE26193-PA 135..418 116..381 469 39.3 Plus
Dyak\GE17974-PA 438 GE17974-PA 1..434 6..385 437 30.1 Plus
Dyak\GE26193-PA 537 GE26193-PA 28..360 70..379 414 32.6 Plus
Dyak\GE26193-PA 537 GE26193-PA 250..536 120..386 397 37.7 Plus
Dyak\GE14751-PA 580 GE14751-PA 164..502 6..382 368 30 Plus
Dyak\GE26193-PA 537 GE26193-PA 329..526 116..326 339 38.6 Plus
Dyak\GE18295-PA 346 GE18295-PA 108..317 162..379 255 31.1 Plus
Dyak\GE18295-PA 346 GE18295-PA 121..263 231..381 192 31.9 Plus
Dyak\GE14751-PA 580 GE14751-PA 354..554 121..329 182 26.3 Plus

RT01023.hyp Sequence

Translation from 17 to 1164

> RT01023.hyp
MASVFDESHEPGLSIAYIIYKCTGWQVEKHDPLSNTICKSCLEDAQNAFD
IIETYERSHQFYRFLKDVREEESENDGSGCSEEVEAAERDLQDGADDVDS
GNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCS
LCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQMHERR
GSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELWMHM
RVHQERLFTCGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTLGHSKA
LKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRKP
FKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM*

RT01023.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-PA 382 CG7204-PA 1..382 1..382 2100 100 Plus
Neu2-PB 308 CG7204-PB 1..303 1..303 1673 100 Plus
CG15436-PA 346 CG15436-PA 15..341 1..320 527 34 Plus
CG5245-PA 501 CG5245-PA 103..385 111..376 482 35.4 Plus
CG5245-PA 501 CG5245-PA 77..357 114..376 478 34.8 Plus
CG5245-PA 501 CG5245-PA 216..492 114..371 461 35.3 Plus
crol-PG 878 CG14938-PG 302..581 115..374 452 34.2 Plus
CG5245-PA 501 CG5245-PA 58..327 130..374 446 35.8 Plus
CG5245-PA 501 CG5245-PA 332..493 119..279 359 42.6 Plus
CG15436-PA 346 CG15436-PA 126..319 175..376 311 31.6 Plus
CG5245-PA 501 CG5245-PA 75..273 196..376 290 32.5 Plus
Neu2-PB 308 CG7204-PB 111..259 194..379 214 30.5 Plus