Clone RT01025 Report

Search the DGRC for RT01025

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:25
Vector:pCR2.1
Associated Gene/Transcriptdimm-RA
Protein status:RT01025.pep: gold
Sequenced Size:1195

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8667 2006-05-19 RT target
dimm 2008-04-29 Release 5.5 accounting
dimm 2008-08-15 Release 5.9 accounting
dimm 2008-12-18 5.12 accounting

Clone Sequence Records

RT01025.complete Sequence

1195 bp (1195 high quality bases) assembled on 2010-06-29

GenBank Submission: BT028819.3

> RT01025.complete
GTCGACATGGATGCCACACAGCTAACGGAACTAATGGGCAGCCATGATTT
TATGCAATTACAACATCAATTGCATCACAATAACAACAATTACAACACAG
ACGGACACAATGGACTGTCTTCAGAATCAGCGGAGGGAAGTTCTCGACCC
GTCCGTCGTGCCACCAGACGAACTTCACAGCTAAGCAATAATACTTATGA
CCTGGAGATGACAGATTCCAGTTCGCAAAGCGATGACACAAGCGGCGGAG
GCGGCAGCAGCAACGGGGGTGGTAGCACCACAAACACTGGACATCCGTCC
GGCTGCTCTCTGGGCGGTCAGGGGCCATCAGGCCGCGGACGGGTCCAGCA
AGCTAGCTCAGGAGCCTGTCCATCTACCATTGCCCCGAACAGTACCAGCT
CCAACTCCTCCAATGCAAACGGCAACGCCAGTAGGCGGCGGAAAGGCGCC
CTGAACGCTAAGGAGCGGAATATGCGTCGCTTGGAGTCAAATGAACGAGA
GCGAATGCGGATGCACAGCCTAAACGATGCATTTCAATCGCTTCGAGAGG
TCATACCGCACGTGGAGATGGAGCGACGGCTGTCCAAGATTGAAACACTC
ACACTGGCCAAAAACTATATCATAAATCTGACGCACATAATACTCTCCAA
GCGCAACGAGGAGGCGGCGGCCTTGGAGCTGAACTCGGGGGCCGTTGGTG
GGGTGCTGCTCTCAAATCTTTCCTCCGAAAGTGGAGGACCGGTAGCGAGT
GGTATTCCTGCAAATTCCAATGCCGCGACGATATGCTTTGAGGATACCCT
GGCCAGCGGAGGTGCCTTTGACTGCGCCATTTTGGCAGCCACCGACGGCA
GCCTACTGAACGCTGCCACAGTGACAACCAGCCCCGCGATGCAGAGCATC
CAATCACAAGCCATACACTTGCAGACACCGATGGAGCAGCAGCAACAGCA
AGCCAGCCATCTTCCGCACCATCAGCAGGCGATGCATGGCCATGGCCATC
TAGGGGCCAGCATTCAATCGCAGCAGCAGCCTAGCCTTGTACTAAATGGC
ACTACATCGGTGGGCCTGGGAATTGGAATAGGGGTTGGTGTCGGAGTGGG
AGTTGGGGTGTGCAACAATGCGCCAAGCTTTGCTGATATCAATGATAATT
TCGACGAGCCCTTTCGAGAGTTTCTGTAAAAGCTTTATCGACCAT

RT01025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
dimm.c 2293 dimm.c 424..1597 6..1179 5870 100 Plus
dimm-RA 1414 dimm-RA 43..1216 6..1179 5870 100 Plus
dimm.b 1724 dimm.b 424..1597 6..1179 5870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21337869..21338870 178..1179 5010 100 Plus
chr2L 23010047 chr2L 21337633..21337807 6..180 875 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21339346..21340347 178..1179 5010 100 Plus
2L 23513712 2L 21339110..21339284 6..180 875 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21339346..21340347 178..1179 5010 100 Plus
2L 23513712 2L 21339110..21339284 6..180 875 100 Plus
Blast to na_te.dros performed 2019-03-15 17:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2509 835..986 149 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6899 846..1030 139 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6857 935..1030 133 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2448 935..1058 119 59.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9152..9248 905..998 116 63.3 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 597..624 1111..1084 113 89.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2466 933..1030 111 62.4 Plus

RT01025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:24:22 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21337627..21337807 1..180 97 -> Plus
chr2L 21337872..21338872 181..1183 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-29 16:18:24 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:37:09 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:34:07 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:47:55 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:42 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 16:18:23 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:37:09 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1176 6..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:34:07 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 37..1218 1..1183 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:47:55 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 1..1173 7..1179 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:42 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
dimm-RA 37..1218 1..1183 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:22 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21339104..21339284 1..180 97 -> Plus
2L 21339349..21340349 181..1183 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:22 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21339104..21339284 1..180 97 -> Plus
2L 21339349..21340349 181..1183 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:22 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21339104..21339284 1..180 97 -> Plus
2L 21339349..21340349 181..1183 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:34:07 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21339104..21339284 1..180 97 -> Plus
arm_2L 21339349..21340349 181..1183 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:49 Download gff for RT01025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21339349..21340349 181..1183 99   Plus
2L 21339104..21339284 1..180 97 -> Plus

RT01025.pep Sequence

Translation from 0 to 1178

> RT01025.pep
VDMDATQLTELMGSHDFMQLQHQLHHNNNNYNTDGHNGLSSESAEGSSRP
VRRATRRTSQLSNNTYDLEMTDSSSQSDDTSGGGGSSNGGGSTTNTGHPS
GCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSNANGNASRRRKGA
LNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETL
TLAKNYIINLTHIILSKRNEEAAALELNSGAVGGVLLSNLSSESGGPVAS
GIPANSNAATICFEDTLASGGAFDCAILAATDGSLLNAATVTTSPAMQSI
QSQAIHLQTPMEQQQQQASHLPHHQQAMHGHGHLGASIQSQQQPSLVLNG
TTSVGLGIGIGVGVGVGVGVCNNAPSFADINDNFDEPFREFL*

RT01025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14327-PA 407 GF14327-PA 1..407 3..392 1100 70.7 Plus
Dana\GF10169-PA 398 GF10169-PA 96..217 110..216 164 35.2 Plus
Dana\GF14839-PA 199 GF14839-PA 140..195 159..214 160 55.4 Plus
Dana\GF11275-PA 200 GF11275-PA 115..170 159..214 155 48.2 Plus
Dana\GF14803-PA 234 GF14803-PA 131..181 160..208 155 62.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21298-PA 392 GG21298-PA 1..392 3..392 1559 91.3 Plus
Dere\GG13612-PA 407 GG13612-PA 91..212 110..216 170 36.1 Plus
Dere\GG21703-PA 196 GG21703-PA 137..192 159..214 160 55.4 Plus
Dere\GG22282-PA 189 GG22282-PA 104..159 159..214 154 48.2 Plus
Dere\GG21094-PA 232 GG21094-PA 130..180 160..208 154 62.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13314-PA 421 GH13314-PA 1..312 3..307 840 70.7 Plus
Dgri\GH16587-PA 400 GH16587-PA 129..230 117..216 170 36.3 Plus
Dgri\GH10530-PA 214 GH10530-PA 155..210 159..214 159 55.4 Plus
Dgri\GH11626-PA 241 GH11626-PA 138..188 160..208 155 62.7 Plus
Dgri\GH19006-PA 262 GH19006-PA 82..150 159..227 154 44.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
dimm-PB 390 CG8667-PB 1..390 3..392 1999 100 Plus
dimm-PA 390 CG8667-PA 1..390 3..392 1999 100 Plus
amos-PA 198 CG10393-PA 111..194 131..214 173 44 Plus
Oli-PC 232 CG5545-PC 102..180 125..208 158 45.3 Plus
Oli-PB 232 CG5545-PB 102..180 125..208 158 45.3 Plus
Oli-PD 232 CG5545-PD 102..180 125..208 158 45.3 Plus
Oli-PA 232 CG5545-PA 102..180 125..208 158 45.3 Plus
tap-PA 398 CG7659-PA 91..212 110..216 156 36.9 Plus
cato-PA 189 CG7760-PA 78..184 133..238 150 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12220-PA 413 GI12220-PA 1..413 3..392 844 60.7 Plus
Dmoj\GI12435-PA 388 GI12435-PA 95..216 110..216 179 36.9 Plus
Dmoj\GI17198-PA 217 GI17198-PA 158..213 159..214 161 55.4 Plus
Dmoj\GI17928-PA 241 GI17928-PA 137..187 160..208 155 62.7 Plus
Dmoj\GI20292-PA 196 GI20292-PA 70..168 120..214 151 36.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26661-PA 421 GL26661-PA 1..421 3..392 1109 68.7 Plus
Dper\GL15578-PA 412 GL15578-PA 108..216 110..216 170 35.8 Plus
Dper\GL18743-PA 206 GL18743-PA 147..202 159..214 160 55.4 Plus
Dper\GL14513-PA 236 GL14513-PA 133..183 160..208 155 62.7 Plus
Dper\GL12422-PA 253 GL12422-PA 51..150 131..227 149 37 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21247-PA 421 GA21247-PA 1..421 3..392 1109 68.7 Plus
Dpse\GA20508-PA 412 GA20508-PA 108..216 110..216 174 36.7 Plus
Dpse\GA10296-PA 206 GA10296-PA 147..202 159..214 160 55.4 Plus
Dpse\GA18959-PA 236 GA18959-PA 133..183 160..208 155 62.7 Plus
Dpse\GA20568-PA 197 GA20568-PA 110..165 159..214 153 48.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23409-PA 357 GM23409-PA 1..357 3..392 1310 82.4 Plus
Dsec\GM25695-PA 398 GM25695-PA 91..212 110..216 169 36.1 Plus
Dsec\GM20070-PA 188 GM20070-PA 77..158 133..214 162 39 Plus
Dsec\GM17083-PA 197 GM17083-PA 138..193 159..214 159 55.4 Plus
Dsec\GM17248-PA 232 GM17248-PA 130..180 160..208 154 62.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24318-PA 386 GD24318-PA 1..386 3..392 1545 92.6 Plus
Dsim\GD14703-PA 398 GD14703-PA 91..212 110..216 169 36.1 Plus
Dsim\GD25551-PA 188 GD25551-PA 77..158 133..214 161 39 Plus
Dsim\GD21828-PA 197 GD21828-PA 138..193 159..214 159 55.4 Plus
Dsim\GD24118-PA 232 GD24118-PA 130..180 160..208 154 62.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17849-PA 418 GJ17849-PA 1..418 3..392 928 63.3 Plus
Dvir\GJ12331-PA 390 GJ12331-PA 125..226 117..216 167 36.3 Plus
Dvir\GJ19805-PA 201 GJ19805-PA 142..197 159..214 159 55.4 Plus
Dvir\GJ17701-PA 241 GJ17701-PA 137..187 160..208 154 62.7 Plus
Dvir\GJ24574-PA 261 GJ24574-PA 82..150 159..227 154 44.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18738-PA 392 GK18738-PA 1..392 3..392 985 63.7 Plus
Dwil\GK16635-PA 424 GK16635-PA 162..235 143..216 167 40.5 Plus
Dwil\GK24655-PA 198 GK24655-PA 139..194 159..214 161 55.4 Plus
Dwil\GK18164-PA 246 GK18164-PA 142..192 160..208 155 62.7 Plus
Dwil\GK20722-PA 168 GK20722-PA 85..140 159..214 148 48.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12913-PA 393 GE12913-PA 1..393 3..392 1541 91.9 Plus
Dyak\GE19908-PA 401 GE19908-PA 91..212 110..216 168 36.1 Plus
Dyak\GE12726-PA 198 GE12726-PA 139..194 159..214 160 55.4 Plus
Dyak\GE14078-PA 189 GE14078-PA 104..159 159..214 154 48.2 Plus
Dyak\GE12799-PA 232 GE12799-PA 130..180 160..208 154 62.7 Plus

RT01025.hyp Sequence

Translation from 0 to 1178

> RT01025.hyp
TIMDATQLTELMGSHDFMQLQHQLHHNNNNYNTDGHNGLSSESAEGSSRP
VRRATRRTSQLSNNTYDLEMTDSSSQSDDTSGGGGSSNGGGSTTNTGHPS
GCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSNANGNASRRRKGA
LNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETL
TLAKNYIINLTHIILSKRNEEAAALELNSGAVGGVLLSNLSSESGGPVAS
GIPANSNAATICFEDTLASGGAFDCAILAATDGSLLNAATVTTSPAMQSI
QSQAIHLQTPMEQQQQQASHLPHHQQAMHGHGHLGASIQSQQQPSLVLNG
TTSVGLGIGIGVGVGVGVGVCNNAPSFADINDNFDEPFREFL*

RT01025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
dimm-PB 390 CG8667-PB 1..390 3..392 1999 100 Plus
dimm-PA 390 CG8667-PA 1..390 3..392 1999 100 Plus
amos-PA 198 CG10393-PA 111..194 131..214 173 44 Plus
Oli-PC 232 CG5545-PC 102..180 125..208 158 45.3 Plus
Oli-PB 232 CG5545-PB 102..180 125..208 158 45.3 Plus