Clone RT01026 Report

Search the DGRC for RT01026

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:26
Vector:pCR2.1
Associated Gene/Transcriptind-RB
Protein status:RT01026.pep: gold
Sequenced Size:1208

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11551 2006-05-19 RT target
ind 2008-04-29 Release 5.5 accounting
ind 2008-08-15 Release 5.9 accounting
ind 2008-12-18 5.12 accounting

Clone Sequence Records

RT01026.complete Sequence

1208 bp (1208 high quality bases) assembled on 2008-07-28

GenBank Submission: BT029146

> RT01026.complete
GAAGTTATCAGTCGACATGGTGACTAAATGGCCGAACACACTCGCTCAAA
CAACCCTCGAATTGGCCCTCAGGGGTGTGGAAGTGGCAAACCAACCCCCA
GAACAGAGTCTCGAGGTATATAAGAACCGGGTGAGGGCGCAGCAGCCAGA
CAGTTTCGCACAGTCAGCGATCGTGTTCAGTAGCTCATCTCGAGATCAGT
TGGAAAACGAAATACCCCAGAAACCCAAGATGTCGCGTTCATTTTTGATG
GATTCCCTACTCAGCGATAGGCCCAATTTGAGCCAGAAGAAGGAGAAACT
GGGATCGCCAGGAGGAAGTCCTACAGCCGCTGCTGCAGTGGCCGCAGCTG
CCATGTTACCATCGATACCCATGCTTCCTTACCCGGCCAGCTATGTGGGC
AGCTATCTCTTCTCCTTGGGCATCCAGCAGCAGCAGCAACAACAGCAGCA
GCAGCAACAGCACGCAGCAGCTGCAGCAGCGGCCGCAGCAGCAGCAGCTG
CCTTGCAGCAACATCCACATGTCAGTTCGAGTCCCGGTTCCCTTTACCAT
CCATACGCCCAGCTGTTCGCCAGCAAGAGGAAGTCCAGTGGATTCAGCAA
CTACGAAGGATGTTATCCATCGCCACCGCTCTCGGCCAATCCCAACTCCC
AGCAATTGCCGCCAATACACAACCTCTACGGATCTCCAGTTGTGGGCGGA
TTACCCTTACCGGAACCTGGAAGCTTCTGCACATCACCGTCCGCTTCATC
GTCCGCCTCTTTGGATTATACCAATAACTTTGATGAACCTCAAGGAAAGC
GTTTCAAGCACGAGTCCTCCTGCTCTCCGAATAGCTCACCACTGAAGAAC
CACTCTTCGGGAGGTCCCGTCGAGATCACGCCGCTGATCAACGATTATGC
CGATTCCAGCAAAAGGATCCGCACTGCCTTCACCAGCACCCAGTTGCTGG
AGCTCGAGCGAGAATTCTCGCACAACGCCTACCTATCCCGCCTACGTCGC
ATCGAAATCGCCAATAGATTGCGCCTTTCCGAGAAGCAGGTGAAGATCTG
GTTCCAGAATCGCCGAGTCAAGCAGAAAAAGGGCGGCTCCGAAAGTCCCA
CCTTCAATCTGTCCACCAACTCCAATGGAAGTCCGCAAGCATCTCCAGTG
TCTCCCCAAGTCAAAGTCCACGAATTGAAGGTTGAGGCGTAGAAGCTTTA
TCGACCAT

RT01026.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
ind-RA 1284 ind-RA 1..1178 17..1194 5890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15032946..15034123 1194..17 5860 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15042900..15044077 1194..17 5890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15036000..15037177 1194..17 5890 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:54:37 has no hits.

RT01026.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:55:41 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15032940..15033641 499..1202 99 == Minus
chr3L 15033716..15034123 17..424 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:49 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:03:21 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:16 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RB 1..963 230..1192 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:44:33 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:48:20 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RB 1..963 230..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:22:59 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1184 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:03:21 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1184 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:16 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RB 1..1031 170..1202 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:44:32 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RA 1..1184 17..1202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:48:20 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
ind-RB 1..1031 170..1202 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:41 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15042894..15044077 17..1202 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:41 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15042894..15044077 17..1202 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:41 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15042894..15044077 17..1202 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:16 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15035994..15037177 17..1202 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:31:25 Download gff for RT01026.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15035994..15037177 17..1202 99   Minus

RT01026.pep Sequence

Translation from 1 to 1191

> RT01026.pep
KLSVDMVTKWPNTLAQTTLELALRGVEVANQPPEQSLEVYKNRVRAQQPD
SFAQSAIVFSSSSRDQLENEIPQKPKMSRSFLMDSLLSDRPNLSQKKEKL
GSPGGSPTAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQ
QQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSN
YEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASS
SASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYA
DSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIW
FQNRRVKQKKGGSESPTFNLSTNSNGSPQASPVSPQVKVHELKVEA*

RT01026.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10750-PA 307 GF10750-PA 1..307 77..396 1086 82 Plus
Dana\GF17797-PA 262 GF17797-PA 40..121 300..381 238 58.5 Plus
Dana\GF17792-PA 582 GF17792-PA 368..449 304..384 229 54.8 Plus
Dana\GF17798-PA 790 GF17798-PA 198..254 304..360 223 66.7 Plus
Dana\GF17795-PA 356 GF17795-PA 97..153 304..360 222 73.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13695-PA 319 GG13695-PA 1..319 77..396 1625 97.8 Plus
Dere\GG16614-PA 57 GG16614-PA 1..57 6..62 261 87.7 Plus
Dere\GG13676-PA 579 GG13676-PA 367..448 304..384 228 54.8 Plus
Dere\GG10258-PA 252 GG10258-PA 40..100 300..360 225 70.5 Plus
Dere\GG10235-PA 353 GG10235-PA 91..158 304..369 224 66.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16676-PA 316 GH16676-PA 1..316 77..396 929 73.4 Plus
Dgri\GH19479-PA 599 GH19479-PA 363..444 304..384 228 54.8 Plus
Dgri\GH19484-PA 787 GH19484-PA 169..225 304..360 225 66.7 Plus
Dgri\GH19481-PA 346 GH19481-PA 97..154 304..361 220 72.4 Plus
Dgri\GH18130-PA 314 GH18130-PA 38..95 303..360 218 70.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
ind-PB 320 CG11551-PB 1..320 77..396 1645 100 Plus
Scr-PB 417 CG1030-PB 57..381 101..360 234 32.1 Plus
Scr-PA 417 CG1030-PA 57..381 101..360 234 32.1 Plus
Antp-PK 361 CG1028-PK 89..361 128..386 228 32.3 Plus
Antp-PG 361 CG1028-PG 89..361 128..386 228 32.3 Plus
Antp-PF 365 CG1028-PF 89..365 128..386 226 31.9 Plus
Antp-PE 365 CG1028-PE 89..365 128..386 226 31.9 Plus
Antp-PN 374 CG1028-PN 89..374 128..386 225 31.1 Plus
Antp-PD 374 CG1028-PD 89..374 128..386 225 31.1 Plus
Antp-PJ 378 CG1028-PJ 89..378 128..386 223 30.7 Plus
Antp-PI 378 CG1028-PI 89..378 128..386 223 30.7 Plus
Antp-PL 378 CG1028-PL 89..378 128..386 223 30.7 Plus
Antp-PM 378 CG1028-PM 89..378 128..386 223 30.7 Plus
zen-PA 353 CG1046-PA 16..158 240..369 216 40.6 Plus
zen2-PB 232 CG1048-PB 20..94 300..374 214 58.7 Plus
zen2-PA 252 CG1048-PA 40..114 300..374 214 58.7 Plus
lab-PA 629 CG1264-PA 294..558 128..360 210 31 Plus
unpg-PA 485 CG1650-PA 209..404 212..390 209 35.9 Plus
Dfd-PA 586 CG2189-PA 367..444 304..378 208 56.4 Plus
ftz-PA 410 CG2047-PA 95..311 109..360 207 30.7 Plus
pb-PA 782 CG31481-PA 99..255 197..360 206 36.6 Plus
pb-PD 772 CG31481-PD 99..245 197..360 203 36 Plus
pb-PC 777 CG31481-PC 99..250 197..360 200 36 Plus
pb-PB 777 CG31481-PB 194..250 304..360 198 66.7 Plus
lab-PB 213 CG1264-PB 89..142 307..360 196 72.2 Plus
exex-PA 525 CG8254-PA 439..521 303..385 194 49.4 Plus
B-H2-PA 645 CG5488-PA 161..437 97..360 194 28.3 Plus
en-PA 552 CG9015-PA 302..518 157..366 188 32.2 Plus
en-PB 552 CG9015-PB 302..518 157..366 188 32.2 Plus
abd-A-PB 590 CG10325-PB 241..455 155..360 187 31 Plus
cad-PB 427 CG1759-PB 74..330 108..360 186 26.8 Plus
cad-PA 427 CG1759-PA 74..330 108..360 186 26.8 Plus
Abd-B-PH 493 CG11648-PH 143..459 102..377 184 26.5 Plus
Abd-B-PB 493 CG11648-PB 143..459 102..377 184 26.5 Plus
cad-PC 445 CG1759-PC 74..348 108..360 183 26.5 Plus
Abd-B-PJ 270 CG11648-PJ 118..236 260..377 182 37.2 Plus
Abd-B-PI 270 CG11648-PI 118..236 260..377 182 37.2 Plus
Abd-B-PE 270 CG11648-PE 118..236 260..377 182 37.2 Plus
Abd-B-PD 270 CG11648-PD 118..236 260..377 182 37.2 Plus
Abd-B-PA 270 CG11648-PA 118..236 260..377 182 37.2 Plus
Abd-B-PC 270 CG11648-PC 118..236 260..377 182 37.2 Plus
Abd-B-PG 286 CG11648-PG 118..236 260..377 182 37.2 Plus
Abd-B-PF 323 CG11648-PF 118..236 260..377 182 37.2 Plus
Hmx-PE 592 CG43748-PE 364..525 139..360 182 30.2 Plus
Hmx-PC 592 CG43748-PC 364..525 139..360 182 30.2 Plus
Hmx-PD 718 CG43748-PD 364..525 139..360 182 30.2 Plus
btn-PA 158 CG5264-PA 85..143 302..360 180 59.3 Plus
bap-PA 382 CG7902-PA 157..232 273..360 175 46.6 Plus
abd-A-PD 330 CG10325-PD 139..195 304..360 173 61.4 Plus
abd-A-PC 330 CG10325-PC 139..195 304..360 173 61.4 Plus
abd-A-PA 330 CG10325-PA 139..195 304..360 173 61.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11362-PA 317 GI11362-PA 1..313 77..384 863 67.7 Plus
Dmoj\GI13996-PA 278 GI13996-PA 20..115 300..395 249 56.2 Plus
Dmoj\GI22889-PA 234 GI22889-PA 32..127 300..395 245 55.2 Plus
Dmoj\GI24717-PA 592 GI24717-PA 358..439 304..384 228 54.8 Plus
Dmoj\GI24719-PA 336 GI24719-PA 93..150 304..361 222 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25910-PA 316 GL25910-PA 50..316 124..396 938 78.1 Plus
Dper\GL21773-PA 270 GL21773-PA 41..100 301..360 232 73.3 Plus
Dper\GL22041-PA 602 GL22041-PA 373..454 304..384 228 54.8 Plus
Dper\GL22044-PA 378 GL22044-PA 87..143 304..360 223 73.7 Plus
Dper\GL22046-PA 797 GL22046-PA 191..247 304..360 223 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23649-PA 315 GA23649-PA 1..315 77..396 1027 76.7 Plus
Dpse\GA10340-PA 270 GA10340-PA 41..100 301..360 232 73.3 Plus
Dpse\Dfd-PA 604 GA15291-PA 373..454 304..384 229 54.8 Plus
Dpse\zen-PB 357 GA10326-PB 87..143 304..360 224 73.7 Plus
Dpse\pb-PB 796 GA16277-PB 186..242 304..360 223 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24515-PA 308 GM24515-PA 1..308 77..396 1558 94.4 Plus
Dsec\GM10914-PA 582 GM10914-PA 367..444 304..378 228 56.4 Plus
Dsec\GM10527-PA 351 GM10527-PA 91..158 304..369 226 66.2 Plus
Dsec\GM10530-PA 833 GM10530-PA 246..302 304..360 224 66.7 Plus
Dsec\GM10529-PA 252 GM10529-PA 40..101 300..361 221 67.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12586-PA 319 GD12586-PA 1..319 77..396 1627 97.8 Plus
Dsim\GD19895-PA 582 GD19895-PA 367..448 304..384 228 54.8 Plus
Dsim\GD19522-PA 351 GD19522-PA 91..158 304..369 223 66.2 Plus
Dsim\GD19524-PA 252 GD19524-PA 40..101 300..361 220 67.7 Plus
Dsim\GD19533-PA 189 GD19533-PA 61..114 307..360 212 72.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11617-PA 317 GJ11617-PA 1..317 77..396 916 72.5 Plus
Dvir\GJ23303-PA 322 GJ23303-PA 44..139 300..395 231 52.9 Plus
Dvir\GJ23932-PA 253 GJ23932-PA 40..121 304..384 224 54.8 Plus
Dvir\GJ23937-PA 780 GJ23937-PA 174..230 304..360 223 66.7 Plus
Dvir\zen-PA 340 GJ23935-PA 91..147 304..360 222 73.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17410-PA 307 GK17410-PA 1..307 77..396 969 71.2 Plus
Dwil\GK10829-PA 351 GK10829-PA 79..154 304..380 230 62 Plus
Dwil\GK12250-PA 233 GK12250-PA 38..130 301..395 228 52.6 Plus
Dwil\GK12253-PA 599 GK12253-PA 376..457 304..384 228 54.8 Plus
Dwil\GK10831-PA 816 GK10831-PA 198..254 304..360 225 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19990-PA 324 GE19990-PA 1..324 77..396 1612 95.7 Plus
Dyak\GE24883-PA 588 GE24883-PA 372..453 304..384 228 54.8 Plus
Dyak\GE25830-PA 355 GE25830-PA 91..158 304..369 224 66.2 Plus
Dyak\GE25832-PA 252 GE25832-PA 40..108 300..368 223 62.3 Plus
Dyak\GE25834-PA 784 GE25834-PA 194..250 304..360 223 66.7 Plus

RT01026.hyp Sequence

Translation from 17 to 1191

> RT01026.hyp
MVTKWPNTLAQTTLELALRGVEVANQPPEQSLEVYKNRVRAQQPDSFAQS
AIVFSSSSRDQLENEIPQKPKMSRSFLMDSLLSDRPNLSQKKEKLGSPGG
SPTAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHA
AAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCY
PSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLD
YTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKR
IRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRR
VKQKKGGSESPTFNLSTNSNGSPQASPVSPQVKVHELKVEA*

RT01026.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
ind-PB 320 CG11551-PB 1..320 72..391 1645 100 Plus
Antp-PK 361 CG1028-PK 89..361 123..381 228 32.3 Plus
Antp-PG 361 CG1028-PG 89..361 123..381 228 32.3 Plus
Antp-PF 365 CG1028-PF 89..365 123..381 226 31.9 Plus
Antp-PE 365 CG1028-PE 89..365 123..381 226 31.9 Plus