Clone RT01028 Report

Search the DGRC for RT01028

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:28
Vector:pCR2.1
Associated Gene/TranscriptCG15336-RD
Protein status:RT01028.pep: gold
Sequenced Size:578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15336 2006-05-19 RT target
CG15336 2008-04-29 Release 5.5 accounting
CG15336 2008-08-15 Release 5.9 accounting
CG15336 2008-12-18 5.12 accounting

Clone Sequence Records

RT01028.complete Sequence

578 bp (578 high quality bases) assembled on 2008-07-28

GenBank Submission: BT028821

> RT01028.complete
GAAGTTATCAGTCGACATGGTATTGGATGGGGTGCGTCTAACAATAGTGC
CGACGATTAGATTTGGCACACGCGGACCGACTATGTCGGCGGAACGTCCA
GCTGCCAGCTCCGATAATCGGCGACTTATGTGCGAGTTCTGCGGCTATCG
GACGCGCATCTATTGGAATCTGCAGATCCATCGTCGGCGACACACCGGCG
AAATGCCCTTCAGTTGCCAGCAATGCCAGGCGCGTTTCCCGGCCAGCTAT
CAGCTGAAAAGCCACTTGGAGCGGCACTTGGACGCCGGCGAGCGACGCCA
GCGGCACATTTGCACCGACTGCAACGTGGGTTTCTCCAGTTCGCGGGCCC
TGTACCATCACCGGACGCTCCACGAGGATGGGAAGCGCTTCAAGTGCTCC
CAGTGCGACAAGTCGTTCGCTCAGGCGGCGGGCTACGCCCAACACAAGCG
GATTCACCGCCAGAGGAACCAGCGAGCCACCGAAACCACGGATCTGAAGG
ATCTGCAGATCAAAAGAGTGGTTTCAAGTGTTTTTCATCGGCGCGAGTTT
AACACTGCATAAAAGCTTTATCGACCAT

RT01028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15336-RC 554 CG15336-RC 7..554 17..564 2725 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8039785..8040332 17..564 2710 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8147949..8148496 17..564 2725 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8156047..8156594 17..564 2725 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 14:24:33 has no hits.

RT01028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:25:38 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8039785..8040334 17..568 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:54:51 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RB 1..480 83..562 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:03:22 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RC 1..546 17..562 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:35:46 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RD 1..480 83..562 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:44:39 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RB 1..480 83..562 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:31:59 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RD 1..480 83..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:23:03 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RB 1..548 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:03:22 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RC 1..548 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:35:46 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RD 1..548 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:44:38 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RB 1..548 17..564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:59 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
CG15336-RD 1..550 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:38 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
X 8147949..8148498 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:38 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
X 8147949..8148498 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:25:38 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
X 8147949..8148498 17..568 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:35:46 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8041982..8042531 17..568 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:31:27 Download gff for RT01028.complete
Subject Subject Range Query Range Percent Splice Strand
X 8156047..8156596 17..568 99   Plus

RT01028.pep Sequence

Translation from 1 to 561

> RT01028.pep
KLSVDMVLDGVRLTIVPTIRFGTRGPTMSAERPAASSDNRRLMCEFCGYR
TRIYWNLQIHRRRHTGEMPFSCQQCQARFPASYQLKSHLERHLDAGERRQ
RHICTDCNVGFSSSRALYHHRTLHEDGKRFKCSQCDKSFAQAAGYAQHKR
IHRQRNQRATETTDLKDLQIKRVVSSVFHRREFNTA*

RT01028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20978-PA 136 GF20978-PA 6..132 36..162 574 83.5 Plus
Dana\GF21308-PA 424 GF21308-PA 290..412 37..163 262 43.3 Plus
Dana\GF20977-PA 461 GF20977-PA 343..455 37..153 258 44.4 Plus
Dana\GF16931-PA 1364 GF16931-PA 1181..1308 25..152 220 40.2 Plus
Dana\GF16427-PA 883 GF16427-PA 367..478 37..152 197 35.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19297-PA 152 GG19297-PA 1..150 28..176 721 89.3 Plus
Dere\GG19296-PA 465 GG19296-PA 347..459 37..153 259 42.7 Plus
Dere\GG19299-PA 445 GG19299-PA 308..438 37..170 254 40.7 Plus
Dere\GG11398-PA 1274 GG11398-PA 1100..1223 25..152 239 39.8 Plus
Dere\GG12054-PA 872 GG12054-PA 353..464 37..152 196 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24098-PA 160 GH24098-PA 22..153 31..163 445 65.4 Plus
Dgri\GH24097-PA 508 GH24097-PA 390..502 37..153 263 44.4 Plus
Dgri\GH24099-PA 468 GH24099-PA 333..445 37..153 248 45.3 Plus
Dgri\GH18231-PA 1396 GH18231-PA 1231..1355 22..152 224 42 Plus
Dgri\GH18105-PA 918 GH18105-PA 360..471 37..152 207 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15336-PD 159 CG15336-PD 1..159 28..186 864 100 Plus
CG10959-PB 441 CG10959-PB 307..437 37..170 280 40.7 Plus
CG10959-PA 443 CG10959-PA 309..439 37..170 280 40.7 Plus
CG2129-PA 465 CG2129-PA 347..459 37..153 280 42.7 Plus
CG11902-PB 1426 CG11902-PB 1259..1375 32..152 253 41.3 Plus
wdn-PA 869 CG1454-PA 353..464 37..152 210 35.3 Plus
Neu2-PB 308 CG7204-PB 145..256 40..155 209 38.8 Plus
Neu2-PA 382 CG7204-PA 145..256 40..155 209 38.8 Plus
Clamp-PA 561 CG1832-PA 383..494 37..152 206 36.2 Plus
Clamp-PB 566 CG1832-PB 388..499 37..152 206 36.2 Plus
CG18476-PA 936 CG18476-PA 786..894 40..152 204 38.9 Plus
Meics-PB 571 CG8474-PB 261..368 43..154 202 34.8 Plus
Meics-PA 583 CG8474-PA 273..380 43..154 202 34.8 Plus
odd-PA 392 CG3851-PA 179..337 3..163 200 28.2 Plus
CG3281-PA 538 CG3281-PA 271..399 26..152 196 35.1 Plus
sob-PA 578 CG3242-PA 382..501 29..152 195 33.9 Plus
CG9215-PA 560 CG9215-PA 328..440 37..153 194 35.9 Plus
bowl-PH 744 CG10021-PH 231..344 35..152 193 34.7 Plus
bowl-PG 744 CG10021-PG 231..344 35..152 193 34.7 Plus
bowl-PF 744 CG10021-PF 231..344 35..152 193 34.7 Plus
bowl-PA 744 CG10021-PA 231..344 35..152 193 34.7 Plus
bowl-PD 744 CG10021-PD 231..344 35..152 193 34.7 Plus
bowl-PC 744 CG10021-PC 231..344 35..152 193 34.7 Plus
bowl-PB 744 CG10021-PB 231..344 35..152 193 34.7 Plus
CG5245-PA 501 CG5245-PA 126..252 31..161 192 31.3 Plus
CG14655-PA 525 CG14655-PA 268..372 44..152 189 33 Plus
Opbp-PA 562 CG30443-PA 287..405 30..152 189 31.5 Plus
CG18764-PA 409 CG18764-PA 256..397 40..186 188 32 Plus
CG18262-PA 469 CG18262-PA 306..411 43..152 187 34.5 Plus
ranshi-PA 346 CG9793-PA 173..344 19..164 186 26.2 Plus
CG10462-PF 775 CG10462-PF 569..705 13..151 186 31.7 Plus
CG10462-PC 776 CG10462-PC 570..706 13..151 186 31.7 Plus
CG10462-PB 776 CG10462-PB 570..706 13..151 186 31.7 Plus
CG10462-PE 810 CG10462-PE 606..742 13..151 186 31.7 Plus
CG10462-PD 811 CG10462-PD 605..741 13..151 186 31.7 Plus
CG10462-PA 812 CG10462-PA 606..742 13..151 186 31.7 Plus
Meics-PB 571 CG8474-PB 397..516 39..160 185 32.3 Plus
Meics-PA 583 CG8474-PA 409..528 39..160 185 32.3 Plus
CG1602-PA 577 CG1602-PA 452..577 43..167 185 32.3 Plus
gl-PA 604 CG7672-PA 460..575 37..156 185 34.2 Plus
CG6654-PA 639 CG6654-PA 463..575 37..153 185 33.3 Plus
gl-PC 679 CG7672-PC 460..575 37..156 185 34.2 Plus
Meics-PB 571 CG8474-PB 298..422 23..152 184 32.3 Plus
Meics-PA 583 CG8474-PA 310..434 23..152 184 32.3 Plus
CG7372-PA 971 CG7372-PA 631..735 44..152 183 32.1 Plus
su(Hw)-PC 941 CG8573-PC 414..519 43..152 182 37.3 Plus
su(Hw)-PB 941 CG8573-PB 414..519 43..152 182 37.3 Plus
su(Hw)-PA 941 CG8573-PA 414..519 43..152 182 37.3 Plus
ouib-PA 312 CG11762-PA 151..299 26..181 180 29.9 Plus
CG4424-PA 345 CG4424-PA 178..325 33..184 178 25 Plus
CG31441-PA 341 CG31441-PA 180..338 28..186 176 25.2 Plus
M1BP-PA 418 CG9797-PA 234..394 32..159 176 27 Plus
ZIPIC-PA 457 CG7928-PA 364..448 37..148 175 32.1 Plus
CG17359-PA 339 CG17359-PA 217..339 44..171 174 34.4 Plus
CG17328-PB 382 CG17328-PB 146..247 44..149 173 34.9 Plus
gl-PA 604 CG7672-PA 423..543 28..152 172 28 Plus
gl-PC 679 CG7672-PC 423..543 28..152 172 28 Plus
CG5245-PA 501 CG5245-PA 262..354 56..152 167 36.7 Plus
CG6654-PA 639 CG6654-PA 498..617 44..167 166 30.6 Plus
Opbp-PA 562 CG30443-PA 329..439 44..160 165 29.9 Plus
su(Hw)-PC 941 CG8573-PC 443..559 44..166 165 30.9 Plus
su(Hw)-PB 941 CG8573-PB 443..559 44..166 165 30.9 Plus
su(Hw)-PA 941 CG8573-PA 443..559 44..166 165 30.9 Plus
CG5245-PA 501 CG5245-PA 96..189 56..154 164 35.4 Plus
CG5245-PA 501 CG5245-PA 349..466 31..152 164 29.5 Plus
sob-PA 578 CG3242-PA 418..529 37..152 155 31 Plus
Meics-PB 571 CG8474-PB 430..543 44..155 150 31 Plus
Meics-PA 583 CG8474-PA 442..555 44..155 150 31 Plus
CG6654-PA 639 CG6654-PA 409..518 39..152 149 31.6 Plus
CG7372-PA 971 CG7372-PA 658..763 43..152 149 29.1 Plus
CG5245-PA 501 CG5245-PA 390..492 44..150 145 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14366-PA 173 GI14366-PA 38..163 41..166 455 66.7 Plus
Dmoj\GI14365-PA 451 GI14365-PA 333..446 37..154 248 43.2 Plus
Dmoj\GI14368-PA 425 GI14368-PA 293..405 37..153 239 44.4 Plus
Dmoj\GI10186-PA 1476 GI10186-PA 1322..1435 35..152 213 40.7 Plus
Dmoj\GI10527-PA 897 GI10527-PA 356..467 37..152 208 35.3 Plus
Dmoj\GI10527-PA 897 GI10527-PA 296..383 64..152 144 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20361-PA 77 GL20361-PA 1..64 103..166 270 76.6 Plus
Dper\GL20360-PA 469 GL20360-PA 349..461 37..153 261 42.7 Plus
Dper\GL20362-PA 406 GL20362-PA 278..402 40..170 252 42.7 Plus
Dper\GL21719-PA 1308 GL21719-PA 1130..1256 22..152 242 41.2 Plus
Dper\GL13688-PA 870 GL13688-PA 344..455 37..152 196 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13655-PA 154 GA13655-PA 1..141 28..166 493 67.4 Plus
Dpse\GA15261-PA 469 GA15261-PA 349..461 37..153 261 42.7 Plus
Dpse\GA10668-PA 406 GA10668-PA 278..402 40..170 252 42.7 Plus
Dpse\GA11270-PB 1468 GA11270-PB 1290..1416 22..152 242 41.2 Plus
Dpse\GA13064-PA 871 GA13064-PA 344..455 37..152 196 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11230-PA 160 GM11230-PA 1..158 28..185 781 93 Plus
Dsec\GM11229-PA 465 GM11229-PA 347..459 37..153 260 44.4 Plus
Dsec\GM11231-PA 443 GM11231-PA 309..439 37..170 252 43 Plus
Dsec\GM17841-PA 235 GM17841-PA 65..184 29..152 229 40.3 Plus
Dsec\GM12283-PA 869 GM12283-PA 353..464 37..152 196 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16883-PA 160 GD16883-PA 1..158 28..185 771 91.8 Plus
Dsim\GD16882-PA 465 GD16882-PA 347..459 37..153 259 44.4 Plus
Dsim\GD16884-PA 442 GD16884-PA 308..438 37..170 252 43 Plus
Dsim\GD21213-PA 1344 GD21213-PA 1174..1293 29..152 231 40.3 Plus
Dsim\GD18017-PA 840 GD18017-PA 324..435 37..152 197 35.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19407-PA 179 GJ19407-PA 36..168 34..166 462 65.4 Plus
Dvir\GJ19406-PA 484 GJ19406-PA 366..479 37..154 250 43.2 Plus
Dvir\GJ19408-PA 438 GJ19408-PA 307..419 37..153 239 43.6 Plus
Dvir\GJ23475-PA 1467 GJ23475-PA 1313..1426 35..152 214 40.7 Plus
Dvir\GJ24179-PA 872 GJ24179-PA 350..461 37..152 196 35.3 Plus
Dvir\GJ23475-PA 1467 GJ23475-PA 1350..1467 44..168 156 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18867-PA 165 GK18867-PA 29..151 41..163 451 65.9 Plus
Dwil\GK19959-PA 439 GK19959-PA 294..406 37..153 239 44.4 Plus
Dwil\GK12937-PA 1476 GK12937-PA 1312..1420 40..152 210 41.6 Plus
Dwil\GK10984-PA 855 GK10984-PA 325..436 37..152 196 35.3 Plus
Dwil\GK15349-PA 566 GK15349-PA 388..499 37..152 193 36.2 Plus
Dwil\GK12937-PA 1476 GK12937-PA 1344..1446 44..150 148 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15764-PA 151 GE15764-PA 1..151 28..178 728 87.4 Plus
Dyak\GE15765-PA 442 GE15765-PA 308..438 37..170 260 41.5 Plus
Dyak\GE15763-PA 465 GE15763-PA 347..459 37..153 259 44.4 Plus
Dyak\GE23597-PA 1268 GE23597-PA 1093..1216 25..152 239 39.8 Plus
Dyak\wdn-PA 869 GE10494-PA 353..464 37..152 196 35.3 Plus

RT01028.hyp Sequence

Translation from 17 to 561

> RT01028.hyp
MVLDGVRLTIVPTIRFGTRGPTMSAERPAASSDNRRLMCEFCGYRTRIYW
NLQIHRRRHTGEMPFSCQQCQARFPASYQLKSHLERHLDAGERRQRHICT
DCNVGFSSSRALYHHRTLHEDGKRFKCSQCDKSFAQAAGYAQHKRIHRQR
NQRATETTDLKDLQIKRVVSSVFHRREFNTA*

RT01028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15336-PD 159 CG15336-PD 1..159 23..181 864 100 Plus
CG10959-PB 441 CG10959-PB 307..437 32..165 280 40.7 Plus
CG10959-PA 443 CG10959-PA 309..439 32..165 280 40.7 Plus
CG2129-PA 465 CG2129-PA 347..459 32..148 280 42.7 Plus
CG11902-PB 1426 CG11902-PB 1259..1375 27..147 253 41.3 Plus