BDGP Sequence Production Resources |
Search the DGRC for RT01029
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 10 |
Well: | 29 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG2709-RA |
Protein status: | RT01029.pep: gold |
Sequenced Size: | 741 |
Gene | Date | Evidence |
---|---|---|
CG2709 | 2006-05-19 | RT target |
CG2709 | 2008-04-29 | Release 5.5 accounting |
CG2709 | 2008-08-15 | Release 5.9 accounting |
CG2709 | 2008-12-18 | 5.12 accounting |
741 bp (741 high quality bases) assembled on 2008-07-28
GenBank Submission: BT028822
> RT01029.complete TTATAGTCGACATGGCGAAATCACAAGCAGGTCAGACTGTCGAGCCGGAG GCGTCCAAGCTGTGGATCCACTGCAACAGCTGCTGCGCCCTGTTCTGCGA TAAGAAGCACACCTTCTTCCTGCTCGCCTGCCATCACGTGTTCTGCGAGC GGTGCGTCAAGGTCTCCGCCGGCCGCACGCCCAGCGACGCGCCCATATTC GAATGCTCCACCTGTCGGCGGAGCGTGCGCGGCCGCCAGTTGACCAACTC GATGCCCAACCACTTCAAGCAGCTCTTCCATCCGGAGCCCTTCACCATCG GCAACGACTTTGTGGAGACGTTCCAGCGCGGCAATCATCGGCACTTCGAC AAGTACAAGGAGAGGAAGGAACTGGAGATGGATAAGCTGTTCAAGGACAT CGAGGTGGCCAAGTCCGTGTGCCAGAAACGCTTCCTGGAGGCGCAGATGC TGCGCGTGGAGCGCAAGAAGCTGATGCAGAGGTCGCGCTACATTAAGGCG GAAGTCGCCAATCGGAAGGCGGAAATGCATCGGATGGCCCAGGCCTACCG AAGCCGCTCGCTGACTTCGCAATCCTCGTCATCCGCCCAACGCTCGGCGC GCGGACGTCCTCGTGGCCGTGGAACAGCCACACAGTCCTCCAGTCGACGC CGATCAACGGAATCAGCAAAGCGGCAGCAAATCACCAGCTTCATACACCC GCCGAACAACTCGTTCGATCTGTGAAAGCTTTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2709-RA | 913 | CG2709-RA | 114..828 | 11..725 | 3575 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2620516..2621043 | 5..532 | 99 | -> | Plus |
chrX | 2621108..2621303 | 533..730 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..714 | 12..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..714 | 12..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..714 | 12..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..714 | 12..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..714 | 12..725 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..719 | 12..728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..719 | 12..728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..719 | 12..728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 1..719 | 12..728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2709-RA | 23..746 | 5..730 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2727292..2727487 | 533..730 | 98 | Plus | |
X | 2726700..2727227 | 5..532 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2727292..2727487 | 533..730 | 98 | Plus | |
X | 2726700..2727227 | 5..532 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2727292..2727487 | 533..730 | 98 | Plus | |
X | 2726700..2727227 | 5..532 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2621325..2621520 | 533..730 | 98 | Plus | |
arm_X | 2620733..2621260 | 5..532 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2734798..2735325 | 5..532 | 99 | -> | Plus |
X | 2735390..2735585 | 533..730 | 98 | Plus |
Translation from 2 to 724
> RT01029.pep IVDMAKSQAGQTVEPEASKLWIHCNSCCALFCDKKHTFFLLACHHVFCER CVKVSAGRTPSDAPIFECSTCRRSVRGRQLTNSMPNHFKQLFHPEPFTIG NDFVETFQRGNHRHFDKYKERKELEMDKLFKDIEVAKSVCQKRFLEAQML RVERKKLMQRSRYIKAEVANRKAEMHRMAQAYRSRSLTSQSSSSAQRSAR GRPRGRGTATQSSSRRRSTESAKRQQITSFIHPPNNSFDL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22483-PA | 231 | GF22483-PA | 2..231 | 16..240 | 560 | 50.2 | Plus |
Dana\GF21626-PA | 256 | GF21626-PA | 27..256 | 16..240 | 560 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18626-PA | 244 | GG18626-PA | 1..244 | 4..240 | 1062 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17758-PA | 194 | GH17758-PA | 4..164 | 17..181 | 347 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vilya-PA | 237 | CG2709-PA | 1..237 | 4..240 | 1250 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15091-PA | 261 | GI15091-PA | 17..261 | 16..240 | 395 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19917-PA | 246 | GL19917-PA | 11..246 | 7..240 | 613 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15440-PA | 246 | GA15440-PA | 11..246 | 7..240 | 619 | 52.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19246-PA | 240 | GM19246-PA | 1..240 | 4..240 | 1207 | 95.4 | Plus |
Dsec\GM11047-PA | 240 | GM11047-PA | 1..240 | 4..240 | 1207 | 95.4 | Plus |
Dsec\GM16934-PA | 153 | GM16934-PA | 1..132 | 4..135 | 714 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18899-PA | 245 | GJ18899-PA | 15..245 | 14..240 | 433 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25599-PA | 242 | GK25599-PA | 37..242 | 15..240 | 360 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16279-PA | 246 | GE16279-PA | 1..246 | 4..240 | 916 | 78.5 | Plus |
Translation from 5 to 724
> RT01029.hyp APMAKSQAGQTVEPEASKLWIHCNSCCALFCDKKHTFFLLACHHVFCERC VKVSAGRTPSDAPIFECSTCRRSVRGRQLTNSMPNHFKQLFHPEPFTIGN DFVETFQRGNHRHFDKYKERKELEMDKLFKDIEVAKSVCQKRFLEAQMLR VERKKLMQRSRYIKAEVANRKAEMHRMAQAYRSRSLTSQSSSSAQRSARG RPRGRGTATQSSSRRRSTESAKRQQITSFIHPPNNSFDL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2709-PA | 237 | CG2709-PA | 1..237 | 3..239 | 1250 | 100 | Plus |