BDGP Sequence Production Resources |
Search the DGRC for RT01030
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 10 |
Well: | 30 |
Vector: | pCR2.1 |
Associated Gene/Transcript | HLH54F-RA |
Protein status: | RT01030.pep: gold |
Sequenced Size: | 761 |
Gene | Date | Evidence |
---|---|---|
CG5005 | 2006-05-19 | RT target |
HLH54F | 2008-04-29 | Release 5.5 accounting |
HLH54F | 2008-08-15 | Release 5.9 accounting |
HLH54F | 2008-12-18 | 5.12 accounting |
761 bp (761 high quality bases) assembled on 2008-07-29
GenBank Submission: BT028823
> RT01030.complete GAAGTTATCAGTCGACATGCCACGCAAGAAGCGCAGTTCCAGCCCCACGG AGTTCTTTGATGACGACTTCGATGAGGATGCCAGTTCTCAAAGCTCCCAA CCGCCGGTGCAGCGAAATGCGGCAAATGCCCGGGAGCGGATGCGTATGCG GGTTTTATCCAGCGCCTACGGACGTTTGAAGACCAAGCTGCCCAACATTC CGCCGGACACGAAGCTCTCCAAGTTGGACACGTTGCGTTTGGCCACGCTC TACATCAAGCAGCTAATTACGGCTGTGGAGACAGGCAGCCACTCGCAGAA CCACCCGCACAACCACAACCAGCACCACAGCCTCAACCACAGTCACTCGA GTACCACCAGTTCCGAAGGCCTGGACACAAGTCACATGGCAGATTCGTCC GGTGGAGGCAATTATAATTTCCACAACAACGGACACGGCATGAGCTGGCC CTTTGAGTTCCACCAGAGTAGCCGGAGTTTGGCATTTGCCCCATCATCAT CAACCACCTCATCCGCCCGTATGGATTGGCAAACCCTGCATACGCAATCT TATCCGAAGACTACGCGAGGCGAAACCCATGTTTCGGCGGATCTAAGTTA CCATCAGTTGCCGGAATCTCACAGTCACTGGTATCCGGCGGAAGTGCATC AAATGGAGCCAGCGGCCAGCTGTTCCTATGACTCTGGAATGGGGCAGCAT CAGCGGGGCATAGCTATAGCCACTAGCCATGCCCATGGCATTTAAAAGCT TTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HLH54F-RA | 1348 | HLH54F-RA | 321..1049 | 17..745 | 3645 | 100 | Plus |
HLH54F.b | 1662 | HLH54F.b | 755..1483 | 17..745 | 3645 | 100 | Plus |
HLH54F.a | 1089 | HLH54F.a | 258..910 | 93..745 | 3265 | 100 | Plus |
HLH54F.a | 1089 | HLH54F.a | 159..235 | 17..93 | 385 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13645213..13645562 | 93..442 | 1750 | 100 | Plus |
chr2R | 21145070 | chr2R | 13647170..13647473 | 442..745 | 1490 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 13644701..13644777 | 17..93 | 385 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17758087..17758436 | 93..442 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 17760035..17760338 | 442..745 | 1520 | 100 | Plus |
2R | 25286936 | 2R | 17757575..17757651 | 17..93 | 385 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17759286..17759635 | 93..442 | 1750 | 100 | Plus |
2R | 25260384 | 2R | 17761234..17761537 | 442..745 | 1520 | 100 | Plus |
2R | 25260384 | 2R | 17758774..17758850 | 17..93 | 385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13644701..13644776 | 17..92 | 100 | -> | Plus |
chr2R | 13645213..13645562 | 93..442 | 100 | -> | Plus |
chr2R | 13647171..13647475 | 443..749 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 1..729 | 17..745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 1..729 | 17..745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 1..729 | 17..745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 1..729 | 17..745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 1..729 | 17..745 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 159..889 | 17..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 159..889 | 17..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 171..901 | 17..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 159..889 | 17..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HLH54F-RA | 171..901 | 17..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17760036..17760340 | 443..749 | 99 | Plus | |
2R | 17757575..17757650 | 17..92 | 100 | -> | Plus |
2R | 17758087..17758436 | 93..442 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17760036..17760340 | 443..749 | 99 | Plus | |
2R | 17757575..17757650 | 17..92 | 100 | -> | Plus |
2R | 17758087..17758436 | 93..442 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17760036..17760340 | 443..749 | 99 | Plus | |
2R | 17757575..17757650 | 17..92 | 100 | -> | Plus |
2R | 17758087..17758436 | 93..442 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13645080..13645155 | 17..92 | 100 | -> | Plus |
arm_2R | 13645592..13645941 | 93..442 | 100 | -> | Plus |
arm_2R | 13647541..13647845 | 443..749 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17759286..17759635 | 93..442 | 100 | -> | Plus |
2R | 17761235..17761539 | 443..749 | 99 | Plus | |
2R | 17758774..17758849 | 17..92 | 100 | -> | Plus |
Translation from 1 to 744
> RT01030.pep KLSVDMPRKKRSSSPTEFFDDDFDEDASSQSSQPPVQRNAANARERMRMR VLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLYIKQLITAVETGSHSQN HPHNHNQHHSLNHSHSSTTSSEGLDTSHMADSSGGGNYNFHNNGHGMSWP FEFHQSSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSY HQLPESHSHWYPAEVHQMEPAASCSYDSGMGQHQRGIAIATSHAHGI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11672-PA | 238 | GF11672-PA | 1..238 | 6..247 | 898 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21821-PA | 241 | GG21821-PA | 1..241 | 6..247 | 1059 | 91.3 | Plus |
Dere\GG23955-PA | 174 | GG23955-PA | 59..115 | 37..93 | 157 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22024-PA | 250 | GH22024-PA | 1..250 | 6..247 | 582 | 60 | Plus |
Dgri\GH13020-PA | 175 | GH13020-PA | 63..119 | 37..93 | 152 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HLH54F-PA | 242 | CG5005-PA | 1..242 | 6..247 | 1297 | 100 | Plus |
Hand-PA | 174 | CG18144-PA | 59..115 | 37..93 | 150 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19113-PA | 246 | GI19113-PA | 1..246 | 6..247 | 671 | 58.9 | Plus |
Dmoj\GI18263-PA | 170 | GI18263-PA | 59..115 | 37..93 | 153 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17221-PA | 233 | GL17221-PA | 1..232 | 6..247 | 784 | 71.1 | Plus |
Dper\GL18976-PA | 173 | GL18976-PA | 58..109 | 37..88 | 148 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18588-PB | 233 | GA18588-PB | 1..232 | 6..247 | 788 | 71.9 | Plus |
Dpse\GA14815-PA | 173 | GA14815-PA | 58..109 | 37..88 | 148 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21822-PA | 242 | GM21822-PA | 1..242 | 6..247 | 1254 | 97.5 | Plus |
Dsec\GM11834-PA | 171 | GM11834-PA | 56..112 | 37..93 | 156 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11315-PA | 242 | GD11315-PA | 1..242 | 6..247 | 1250 | 97.1 | Plus |
Dsim\GD22284-PA | 174 | GD22284-PA | 59..115 | 37..93 | 157 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22243-PA | 245 | GJ22243-PA | 1..245 | 6..247 | 642 | 58.3 | Plus |
Dvir\GJ17522-PA | 133 | GJ17522-PA | 22..78 | 37..93 | 149 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22890-PA | 262 | GK22890-PA | 1..251 | 6..233 | 531 | 57.5 | Plus |
Translation from 17 to 744
> RT01030.hyp MPRKKRSSSPTEFFDDDFDEDASSQSSQPPVQRNAANARERMRMRVLSSA YGRLKTKLPNIPPDTKLSKLDTLRLATLYIKQLITAVETGSHSQNHPHNH NQHHSLNHSHSSTTSSEGLDTSHMADSSGGGNYNFHNNGHGMSWPFEFHQ SSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSYHQLPE SHSHWYPAEVHQMEPAASCSYDSGMGQHQRGIAIATSHAHGI*