Clone RT01042 Report

Search the DGRC for RT01042

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:42
Vector:pCR2.1
Associated Gene/TranscriptBteb2-RA
Protein status:RT01042.pep: gold
Sequenced Size:968

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2932 2006-05-19 RT target
Bteb2 2008-04-29 Release 5.5 accounting
Bteb2 2008-08-15 Release 5.9 accounting
Bteb2 2008-12-18 5.12 accounting

Clone Sequence Records

RT01042.complete Sequence

968 bp (968 high quality bases) assembled on 2008-07-29

GenBank Submission: BT029148

> RT01042.complete
GAAGTTATCAGTCGACATGGACTTCTTTGCGACGGGTGGATTCCAGCAGC
TTTACAGCGACTTGGAAGAGGAGCCACTGGCCGGCGGCGATGCGCTGCTA
AATATAGTCAGTGTTGGGGAATTCGATAGCACCTATGTGGATACTAGCTT
TTCCGGTGGCAACTATAATCAGCTGGAATTCGAGGAGTCGGATTATTATG
GCATCATCACATTGGACAGTAATAATAATACAAATACTAATGGGAATATC
CAGGTGGGTCTGCCCCACGTGGAGGATCCTTCATTGTTCATCGACTTCAA
TGACCTGACCGTATGTCCGCCGGACTTAAGTGATTGGGAGCAGCGACTGC
TGGATAACTACGTAGAGATTCCGGACCTGGTGGACTTTCTGCCGGAACGA
ACTCCCCTGTGCACGGATAACTGTGCGGACTTTCTGGAGGAGAGCAACAG
CAATCTGCGGCTGTCGGGGCCACCACATTCAGAGATTTTCGTTCCCGATC
GATCGTCTTCCTCGCCCGGCAGCAGTGATTCCGCCAGTCCAGCTGAAGCT
GTTGCCCCACCTTCTGCCCTCCAGATGAGTGAAAATGCCGCCGGCGAACG
GGGTTACCTGTGCACCTTTGGCAATTGCGAAAAGATCTACGCCAAGCCCG
CGCATCTGAAGGCCCATTTGAGGCGGCATCTAGGCGAGAAGCCCTACGTC
TGCAGTTGGCCAGATTGCGTCTGGCGGTTCTCCCGATCCGATGAACTGGC
CCGCCACAAGCGCTCCCATTCCGGCGTGAAGCCGTACAAATGTGACTACT
GTTCCAAGTGCTTCGCCAGGTCGGATCACCTCACCAAGCATCGTAAGGTG
CACGAAAGACGTCTTCTGGCCGCCTCCAGAGCTGGCAGATCCCTGATCTC
CGACGATCTGTATGCCGTGCGACCAGGTCGAAAGCGAAAGAATCAGTTAT
AGAAGCTTTATCGACCAT

RT01042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Bteb2-RA 962 Bteb2-RA 1..934 17..950 4670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4663351..4664285 950..16 4675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4770584..4771518 950..16 4675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4778682..4779616 950..16 4675 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:43:51 has no hits.

RT01042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:44:56 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4663349..4664294 7..953 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:02 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:37 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:01 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:25 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:18:37 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:39 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:36 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:01 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 62..1007 7..953 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:25 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 1..936 17..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:18:37 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
Bteb2-RA 62..1007 7..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:56 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
X 4770582..4771527 7..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:56 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
X 4770582..4771527 7..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:56 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
X 4770582..4771527 7..953 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:01 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4664615..4665560 7..953 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:38:11 Download gff for RT01042.complete
Subject Subject Range Query Range Percent Splice Strand
X 4778680..4779625 7..953 99   Minus

RT01042.pep Sequence

Translation from 1 to 951

> RT01042.pep
KLSVDMDFFATGGFQQLYSDLEEEPLAGGDALLNIVSVGEFDSTYVDTSF
SGGNYNQLEFEESDYYGIITLDSNNNTNTNGNIQVGLPHVEDPSLFIDFN
DLTVCPPDLSDWEQRLLDNYVEIPDLVDFLPERTPLCTDNCADFLEESNS
NLRLSGPPHSEIFVPDRSSSSPGSSDSASPAEAVAPPSALQMSENAAGER
GYLCTFGNCEKIYAKPAHLKAHLRRHLGEKPYVCSWPDCVWRFSRSDELA
RHKRSHSGVKPYKCDYCSKCFARSDHLTKHRKVHERRLLAASRAGRSLIS
DDLYAVRPGRKRKNQL*

RT01042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20344-PA 277 GF20344-PA 1..277 6..316 897 61.1 Plus
Dana\GF12443-PA 552 GF12443-PA 434..551 161..284 314 49.2 Plus
Dana\GF24217-PA 771 GF24217-PA 682..766 200..284 307 60 Plus
Dana\GF18887-PA 925 GF18887-PA 700..795 199..299 305 49.5 Plus
Dana\GF11307-PA 354 GF11307-PA 274..354 204..284 300 58 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18517-PA 320 GG18517-PA 1..320 6..316 1416 88.1 Plus
Dere\GG22702-PA 562 GG22702-PA 441..561 158..284 312 47.2 Plus
Dere\GG15151-PA 774 GG15151-PA 685..769 200..284 309 60 Plus
Dere\GG12363-PA 964 GG12363-PA 717..828 183..299 307 47 Plus
Dere\GG20076-PA 412 GG20076-PA 332..412 204..284 300 58 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12832-PA 331 GH12832-PA 1..331 6..316 926 56.7 Plus
Dgri\GH20565-PA 595 GH20565-PA 510..594 200..284 308 58.8 Plus
Dgri\GH16421-PA 749 GH16421-PA 660..744 200..284 306 60 Plus
Dgri\GH20915-PA 385 GH20915-PA 305..385 204..284 298 58 Plus
Dgri\GH21701-PA 430 GH21701-PA 104..221 176..292 291 47.5 Plus
Dgri\GH21701-PA 430 GH21701-PA 371..426 227..284 153 46.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Klf15-PA 311 CG2932-PA 1..311 6..316 1674 100 Plus
luna-PC 570 CG33473-PC 439..569 148..284 317 44.5 Plus
luna-PD 570 CG33473-PD 439..569 148..284 317 44.5 Plus
luna-PB 570 CG33473-PB 439..569 148..284 317 44.5 Plus
dar1-PB 751 CG12029-PB 666..746 204..284 307 61.7 Plus
CG42741-PA 362 CG9895-PA 282..362 204..284 303 58 Plus
Spps-PA 968 CG5669-PA 725..832 187..299 289 46.9 Plus
Spps-PB 985 CG5669-PB 725..832 187..299 289 46.9 Plus
cbt-PC 347 CG4427-PC 176..266 196..286 285 54.9 Plus
cbt-PB 347 CG4427-PB 176..266 196..286 285 54.9 Plus
cbt-PA 428 CG4427-PA 257..347 196..286 285 54.9 Plus
CG3065-PC 378 CG3065-PC 44..173 157..288 281 43.3 Plus
CG3065-PA 400 CG3065-PA 66..195 157..288 281 43.3 Plus
CG3065-PB 400 CG3065-PB 66..195 157..288 281 43.3 Plus
btd-PA 644 CG12653-PA 329..425 198..291 267 49.5 Plus
Sp1-PB 520 CG1343-PB 192..272 204..284 263 56.8 Plus
Sp1-PD 715 CG1343-PD 387..467 204..284 263 56.8 Plus
Sp1-PE 720 CG1343-PE 392..472 204..284 263 56.8 Plus
Sp1-PF 726 CG1343-PF 387..467 204..284 263 56.8 Plus
hkb-PA 297 CG9768-PA 199..282 208..288 217 46.4 Plus
sr-PC 717 CG7847-PC 558..647 193..284 217 43.5 Plus
sr-PE 906 CG7847-PE 747..836 193..284 217 43.5 Plus
sr-PB 906 CG7847-PB 747..836 193..284 217 43.5 Plus
sr-PA 1186 CG7847-PA 1027..1116 193..284 217 43.5 Plus
sr-PD 1271 CG7847-PD 1027..1116 193..284 217 43.5 Plus
gl-PB 557 CG7672-PB 447..543 185..284 216 43.6 Plus
gl-PA 604 CG7672-PA 447..543 185..284 216 43.6 Plus
gl-PC 679 CG7672-PC 447..543 185..284 216 43.6 Plus
crol-PF 907 CG14938-PF 411..496 195..284 212 42.2 Plus
pad-PB 924 CG10309-PB 665..788 165..284 210 34.1 Plus
crol-PD 878 CG14938-PD 385..467 198..284 207 42.5 Plus
crol-PH 686 CG14938-PH 264..346 198..284 205 40.2 Plus
crol-PC 756 CG14938-PC 263..345 198..284 205 40.2 Plus
crol-PG 878 CG14938-PG 385..467 198..284 205 40.2 Plus
crol-PB 891 CG14938-PB 469..551 198..284 205 40.2 Plus
crol-PI 962 CG14938-PI 469..551 198..284 205 40.2 Plus
crol-PE 962 CG14938-PE 469..551 198..284 205 40.2 Plus
crol-PA 962 CG14938-PA 469..551 198..284 205 40.2 Plus
crol-PH 686 CG14938-PH 292..374 198..284 204 39.1 Plus
crol-PC 756 CG14938-PC 291..373 198..284 204 39.1 Plus
crol-PG 878 CG14938-PG 413..495 198..284 204 39.1 Plus
crol-PB 891 CG14938-PB 497..579 198..284 204 39.1 Plus
crol-PI 962 CG14938-PI 497..579 198..284 204 39.1 Plus
crol-PE 962 CG14938-PE 497..579 198..284 204 39.1 Plus
crol-PA 962 CG14938-PA 497..579 198..284 204 39.1 Plus
Clamp-PA 561 CG1832-PA 383..466 197..284 203 45.5 Plus
Clamp-PB 566 CG1832-PB 388..471 197..284 203 45.5 Plus
crol-PF 907 CG14938-PF 442..524 198..284 202 39.1 Plus
crol-PD 878 CG14938-PD 413..495 198..284 202 39.1 Plus
crol-PF 907 CG14938-PF 470..552 198..284 201 40.2 Plus
crol-PD 878 CG14938-PD 441..523 198..284 201 40.2 Plus
crol-PH 686 CG14938-PH 320..402 198..284 201 40.2 Plus
crol-PC 756 CG14938-PC 319..401 198..284 201 40.2 Plus
CG15436-PA 346 CG15436-PA 188..288 181..284 201 39 Plus
crol-PG 878 CG14938-PG 441..523 198..284 201 40.2 Plus
crol-PB 891 CG14938-PB 525..607 198..284 201 40.2 Plus
crol-PI 962 CG14938-PI 525..607 198..284 201 40.2 Plus
crol-PE 962 CG14938-PE 525..607 198..284 201 40.2 Plus
crol-PA 962 CG14938-PA 525..607 198..284 201 40.2 Plus
Kr-h1-PA 791 CG45074-PA 165..295 149..284 200 33.1 Plus
Kr-h1-PB 845 CG45074-PB 219..349 149..284 200 33.1 Plus
gl-PB 557 CG7672-PB 442..515 209..284 199 46.1 Plus
gl-PA 604 CG7672-PA 442..515 209..284 199 46.1 Plus
gl-PC 679 CG7672-PC 442..515 209..284 199 46.1 Plus
crol-PG 878 CG14938-PG 302..383 199..284 197 38.4 Plus
ci-PB 1279 CG2125-PB 395..502 198..302 197 38.9 Plus
ci-PA 1397 CG2125-PA 513..620 198..302 197 38.9 Plus
mamo-PH 1553 CG45477-PH 1469..1547 202..284 197 43.4 Plus
mamo-PI 1553 CG45477-PI 1469..1547 202..284 197 43.4 Plus
Clamp-PA 561 CG1832-PA 439..524 197..286 195 45.6 Plus
Clamp-PB 566 CG1832-PB 444..529 197..286 195 45.6 Plus
MTF-1-PA 791 CG3743-PA 208..299 209..298 194 41.3 Plus
MTF-1-PF 822 CG3743-PF 423..514 209..298 194 41.3 Plus
CG10348-PB 540 CG10348-PB 311..411 202..307 193 38.3 Plus
Clamp-PA 561 CG1832-PA 412..494 198..284 192 43.7 Plus
Clamp-PB 566 CG1832-PB 417..499 198..284 192 43.7 Plus
Neu2-PB 308 CG7204-PB 93..200 176..287 190 33 Plus
sr-PC 717 CG7847-PC 495..619 169..284 186 35.2 Plus
sr-PE 906 CG7847-PE 684..808 169..284 186 35.2 Plus
sr-PB 906 CG7847-PB 684..808 169..284 186 35.2 Plus
sr-PA 1186 CG7847-PA 964..1088 169..284 186 35.2 Plus
sr-PD 1271 CG7847-PD 964..1088 169..284 186 35.2 Plus
crol-PF 907 CG14938-PF 302..383 199..284 186 36 Plus
crol-PG 878 CG14938-PG 329..411 198..284 185 36.8 Plus
Kr-h1-PA 791 CG45074-PA 297..381 198..284 185 42.5 Plus
Kr-h1-PB 845 CG45074-PB 351..435 198..284 185 42.5 Plus
crol-PB 891 CG14938-PB 302..383 199..284 182 36 Plus
crol-PI 962 CG14938-PI 302..383 199..284 182 36 Plus
crol-PE 962 CG14938-PE 302..383 199..284 182 36 Plus
crol-PA 962 CG14938-PA 302..383 199..284 182 36 Plus
pad-PB 924 CG10309-PB 669..821 146..286 181 28.4 Plus
ci-PB 1279 CG2125-PB 363..450 199..281 180 38.6 Plus
ci-PA 1397 CG2125-PA 481..568 199..281 180 38.6 Plus
gl-PA 604 CG7672-PA 489..571 198..284 175 37.9 Plus
gl-PC 679 CG7672-PC 489..571 198..284 175 37.9 Plus
CG15436-PA 346 CG15436-PA 175..260 193..284 175 39.1 Plus
crol-PF 907 CG14938-PF 329..407 198..280 174 34.9 Plus
crol-PD 878 CG14938-PD 329..411 198..284 173 35.6 Plus
crol-PF 907 CG14938-PF 282..355 209..284 172 36.8 Plus
crol-PD 878 CG14938-PD 282..355 209..284 172 36.8 Plus
crol-PG 878 CG14938-PG 282..355 209..284 172 36.8 Plus
crol-PB 891 CG14938-PB 282..355 209..284 172 36.8 Plus
crol-PI 962 CG14938-PI 282..355 209..284 172 36.8 Plus
crol-PE 962 CG14938-PE 282..355 209..284 172 36.8 Plus
crol-PA 962 CG14938-PA 282..355 209..284 172 36.8 Plus
crol-PC 756 CG14938-PC 162..261 168..284 168 33.3 Plus
crol-PC 756 CG14938-PC 216..289 209..284 165 36.8 Plus
crol-PB 891 CG14938-PB 422..495 209..284 165 36.8 Plus
crol-PI 962 CG14938-PI 422..495 209..284 165 36.8 Plus
crol-PE 962 CG14938-PE 422..495 209..284 165 36.8 Plus
crol-PA 962 CG14938-PA 422..495 209..284 165 36.8 Plus
CG15436-PA 346 CG15436-PA 159..232 209..284 163 38.2 Plus
crol-PF 907 CG14938-PF 498..576 198..280 162 34.9 Plus
crol-PD 878 CG14938-PD 469..547 198..280 162 34.9 Plus
crol-PH 686 CG14938-PH 348..426 198..280 162 34.9 Plus
crol-PC 756 CG14938-PC 347..425 198..280 162 34.9 Plus
crol-PG 878 CG14938-PG 469..547 198..280 162 34.9 Plus
crol-PB 891 CG14938-PB 329..411 198..284 162 33.3 Plus
crol-PB 891 CG14938-PB 553..631 198..280 162 34.9 Plus
crol-PI 962 CG14938-PI 329..411 198..284 162 33.3 Plus
crol-PI 962 CG14938-PI 553..631 198..280 162 34.9 Plus
crol-PE 962 CG14938-PE 329..411 198..284 162 33.3 Plus
crol-PE 962 CG14938-PE 553..631 198..280 162 34.9 Plus
crol-PA 962 CG14938-PA 329..411 198..284 162 33.3 Plus
crol-PA 962 CG14938-PA 553..631 198..280 162 34.9 Plus
CG15436-PA 346 CG15436-PA 235..316 199..284 159 36 Plus
crol-PH 686 CG14938-PH 162..262 168..284 156 33.1 Plus
CG3065-PC 378 CG3065-PC 321..374 229..284 155 48.2 Plus
CG3065-PA 400 CG3065-PA 343..396 229..284 155 48.2 Plus
CG3065-PB 400 CG3065-PB 343..396 229..284 155 48.2 Plus
crol-PB 891 CG14938-PB 357..435 198..280 155 33.7 Plus
crol-PI 962 CG14938-PI 357..435 198..280 155 33.7 Plus
crol-PE 962 CG14938-PE 357..435 198..280 155 33.7 Plus
crol-PA 962 CG14938-PA 357..435 198..280 155 33.7 Plus
crol-PH 686 CG14938-PH 216..290 209..284 153 36.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19759-PA 506 GI19759-PA 418..505 197..284 308 59.1 Plus
Dmoj\GI12500-PA 788 GI12500-PA 699..783 200..284 308 60 Plus
Dmoj\GI18350-PA 387 GI18350-PA 305..387 202..284 299 56.6 Plus
Dmoj\GI23419-PA 1030 GI23419-PA 790..901 183..299 298 46.2 Plus
Dmoj\cbt-PA 455 GI18030-PA 268..358 196..286 292 56 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13099-PA 319 GL13099-PA 1..319 6..316 929 60.6 Plus
Dper\GL21001-PA 891 GL21001-PA 803..889 200..287 304 58 Plus
Dper\GL10855-PA 203 GL10855-PA 100..203 178..284 300 48.6 Plus
Dper\GL20646-PA 255 GL20646-PA 167..254 197..284 300 59.1 Plus
Dper\GL24133-PA 1000 GL24133-PA 748..859 183..299 298 45.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15529-PA 313 GA15529-PA 1..313 6..316 971 62.4 Plus
Dpse\GA22108-PA 203 GA22108-PA 100..203 178..284 300 48.6 Plus
Dpse\cbt-PA 450 GA18176-PA 250..362 172..286 299 52.2 Plus
Dpse\GA19045-PC 999 GA19045-PC 747..858 183..299 297 45.3 Plus
Dpse\GA15902-PA 385 GA15902-PA 79..206 166..292 286 43.8 Plus
Dpse\GA15902-PA 385 GA15902-PA 326..381 227..284 150 46.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12667-PA 277 GM12667-PA 1..277 6..316 1192 82 Plus
Dsec\GM20477-PA 570 GM20477-PA 482..569 197..284 311 59.1 Plus
Dsec\GM14583-PA 750 GM14583-PA 661..745 200..284 308 60 Plus
Dsec\GM15591-PA 400 GM15591-PA 320..400 204..284 299 58 Plus
Dsec\GM23502-PA 966 GM23502-PA 720..831 183..299 298 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16275-PA 311 GD16275-PA 1..311 6..316 1445 93.9 Plus
Dsim\GD25089-PA 363 GD25089-PA 281..363 202..284 300 56.6 Plus
Dsim\GD18309-PA 969 GD18309-PA 722..833 183..299 295 45.3 Plus
Dsim\GD13775-PA 402 GD13775-PA 322..397 209..284 291 63.2 Plus
Dsim\cbt-PA 428 GD22954-PA 257..347 196..286 290 54.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18948-PA 320 GJ18948-PA 1..320 6..316 937 58.6 Plus
Dvir\GJ18175-PA 626 GJ18175-PA 538..625 197..284 309 59.1 Plus
Dvir\GJ12406-PA 759 GJ12406-PA 670..754 200..284 307 60 Plus
Dvir\GJ20749-PA 361 GJ20749-PA 281..361 204..284 293 58 Plus
Dvir\cbt-PA 465 GJ19723-PA 275..365 196..286 290 56 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25311-PA 336 GK25311-PA 1..336 6..316 861 54.1 Plus
Dwil\GK20661-PA 597 GK20661-PA 509..596 197..284 313 59.1 Plus
Dwil\GK19604-PA 364 GK19604-PA 284..364 204..284 299 58 Plus
Dwil\cbt-PA 444 GK24649-PA 263..353 196..286 292 56 Plus
Dwil\GK20520-PA 109 GK20520-PA 20..104 200..284 287 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16834-PA 316 GE16834-PA 1..316 6..316 1360 86.8 Plus
Dyak\GE13058-PA 576 GE13058-PA 488..575 197..284 310 59.1 Plus
Dyak\GE21373-PA 776 GE21373-PA 687..771 200..284 308 60 Plus
Dyak\GE10816-PA 968 GE10816-PA 721..832 183..299 302 46.2 Plus
Dyak\GE11614-PA 417 GE11614-PA 337..417 204..284 301 58 Plus

RT01042.hyp Sequence

Translation from 7 to 952

> RT01042.hyp
FAIMDFFATGGFQQLYSDLEEEPLAGGDALLNIVSVGEFDSTYVDTSFSG
GNYNQLEFEESDYYGIITLDSNNNTNTNGNIQVGLPHVEDPSLFIDFNDL
TVCPPDLSDWEQRLLDNYVEIPDLVDFLPERTPLCTDNCADFLEESNSNL
RLSGPPHSEIFVPDRSSSSPGSSDSASPAEAVAPPSALQMSENAAGERGY
LCTFGNCEKIYAKPAHLKAHLRRHLGEKPYVCSWPDCVWRFSRSDELARH
KRSHSGVKPYKCDYCSKCFARSDHLTKHRKVHERRLLAASRAGRSLISDD
LYAVRPGRKRKNQL*

RT01042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Bteb2-PA 311 CG2932-PA 1..311 4..314 1674 100 Plus
luna-PC 570 CG33473-PC 439..569 146..282 317 44.5 Plus
luna-PD 570 CG33473-PD 439..569 146..282 317 44.5 Plus
luna-PB 570 CG33473-PB 439..569 146..282 317 44.5 Plus
CG42741-PA 362 CG9895-PA 282..362 202..282 303 58 Plus