Clone RT01047 Report

Search the DGRC for RT01047

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:10
Well:47
Vector:pCR2.1
Associated Gene/TranscriptCG13296-RA
Protein status:RT01047.pep: gold
Sequenced Size:1430

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13296 2006-05-19 RT target
CG13296 2008-04-29 Release 5.5 accounting
CG13296 2008-08-15 Release 5.9 accounting
CG13296 2008-12-18 5.12 accounting

Clone Sequence Records

RT01047.complete Sequence

1430 bp (1430 high quality bases) assembled on 2008-07-28

GenBank Submission: BT028831

> RT01047.complete
GAAGTTATCAGTCGACATGCACACGACAGCTCAACTGGATAGTCTGGAGC
AGAAGCGCTCGGCCAGCCTGATCTTCCGAATTGAGCAACTCCTGCCGAGC
ACCAGTATCACACCGACCAGCATGACCACTTCATCGACAGAAACCACATT
GACGGCCACCACGAGCACCGCAAGTCCGGCCAAGCGGATGAGGATGAGCA
ATCCACGACCAGGTGTTTACGCCTCGCAGTACACGCCCAAGGATACCTGC
TCCATGGCCATTCCCACGTCGGCTCTCCTGGGATCTACGGTCATGCCCAC
GGATGGCAGCCGCTCCCACTGCCAGCTGTCCAATGGCGAACTAATCGTAT
CCGGTTCACTGTTGCGGCAGATCAAACTCTCCGAGGATGTGTATAGCTTC
AATGCCATCTTCGAACTGCATGGTGGACAAGTGCGCGTCCGTTTGGTCAG
GGATGTAGCCCGGGAGGACGAGATCGTGGCCTGGTTCGGTGAGGAGTTGG
TTCTCCTTATGGGCATTCCCTTCCTGACGCCCCTAAACATTCAAGGAAAC
AGTCGCTACATGTGTCACCTCTGCCATTTGACTTTCGAGACACCCCACCC
GCTGAAGATCCATTTGGCTCTGGGTTGCGGTCGCAGTGCCATGGACATCC
TTTGGATGCGACTTCACTACGCGCTGAAGGCGGCAGCAAGAAGTCACACA
GAAACCCAGCACTCACCCATTCCGGCGACCTCGTCCACGTCTTCGGCCTC
GCCCACCCACTCGCCACCGCCGCAGATGCCACCACGGTTCTCCGCCTTCC
GTCCCATTGCAGCACTTACCCAGAGTTTGCCCATGGTACCCGTAACCACA
GCAGCAACGCCTCTATCCTACCTGCCCTCCATGTCGATGGCCACTGCACC
GTTGTCGACGAATCCAATGAATGCAGCTGCCCAGATCGAGGCCATAGTCA
GCAATATGGGTGCCTCCAAGCAGGGTCATCTGTGCATCTACTGCGGCAAG
GTGTACTCCCGGAAATATGGCCTGAAGATCCACATACGCACCCACACCGG
ATTCAAGCCGCTGAAGTGCAAGTTCTGCCTGAGACCTTTTGGCGATCCCA
GCAATCTCAACAAGCATGTGAGGCTGCATCTGCAGACGCATCCGAGTAGT
TCCGCGGGAGTCGCCGATGGTGGAGCAAGTGGTGCCGACATGGACGGCGA
TGTGGACATCGAAGGGGAGACGGATGCTGACTACCAGTGCCACGTGTGCC
ATAAATCCTTTCCACGGCGCAGGGATCTACAGCGACACATGGAGACCCGG
CATGGTGGACACCATTCCCATTCCCATTCCGAGTCCCGGTCCAGCTCCAC
CAGCACCTCCAGTACAACCACAATGACCGCAACGGTGACCACATCTACTT
CGAAATCCAGCTAGAAGCTTTATCGACCAT

RT01047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13296-RA 1559 CG13296-RA 31..1428 17..1414 6915 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6156362..6157232 544..1414 4310 99.7 Plus
chr3L 24539361 chr3L 6155707..6156236 17..546 2650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6163812..6164682 544..1414 4280 99.4 Plus
3L 28110227 3L 6163157..6163686 17..546 2650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6156912..6157782 544..1414 4280 99.4 Plus
3L 28103327 3L 6156257..6156786 17..546 2650 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:44:09 has no hits.

RT01047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:14 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6155707..6156235 17..545 100 -> Plus
chr3L 6156364..6157234 546..1419 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:05 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:03:48 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:25 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:46:38 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:17 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:23:53 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:03:48 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:25 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:46:38 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:17 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13296-RA 31..1428 17..1414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:14 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6163157..6163685 17..545 100 -> Plus
3L 6163814..6164684 546..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:14 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6163157..6163685 17..545 100 -> Plus
3L 6163814..6164684 546..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:14 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6163157..6163685 17..545 100 -> Plus
3L 6163814..6164684 546..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:25 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6156257..6156785 17..545 100 -> Plus
arm_3L 6156914..6157784 546..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:32:00 Download gff for RT01047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6156257..6156785 17..545 100 -> Plus
3L 6156914..6157784 546..1419 99   Plus

RT01047.pep Sequence

Translation from 1 to 1413

> RT01047.pep
KLSVDMHTTAQLDSLEQKRSASLIFRIEQLLPSTSITPTSMTTSSTETTL
TATTSTASPAKRMRMSNPRPGVYASQYTPKDTCSMAIPTSALLGSTVMPT
DGSRSHCQLSNGELIVSGSLLRQIKLSEDVYSFNAIFELHGGQVRVRLVR
DVAREDEIVAWFGEELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETPHP
LKIHLALGCGRSAMDILWMRLHYALKAAARSHTETQHSPIPATSSTSSAS
PTHSPPPQMPPRFSAFRPIAALTQSLPMVPVTTAATPLSYLPSMSMATAP
LSTNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTG
FKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGD
VDIEGETDADYQCHVCHKSFPRRRDLQRHMETRHGGHHSHSHSESRSSST
STSSTTTMTATVTTSTSKSS*

RT01047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23530-PA 462 GF23530-PA 1..461 6..467 1748 77.8 Plus
Dana\GF24781-PA 614 GF24781-PA 481..577 323..445 174 34.9 Plus
Dana\GF14578-PA 400 GF14578-PA 150..250 328..429 171 33.3 Plus
Dana\GF25020-PA 670 GF25020-PA 525..605 323..432 170 33.6 Plus
Dana\GF25038-PA 460 GF25038-PA 185..242 324..381 168 51.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15330-PA 460 GG15330-PA 1..430 6..438 1934 93.1 Plus
Dere\GG14656-PA 490 GG14656-PA 223..284 324..385 175 51.6 Plus
Dere\GG14232-PA 621 GG14232-PA 495..575 323..432 173 35.5 Plus
Dere\GG25200-PA 413 GG25200-PA 177..277 328..429 171 33.3 Plus
Dere\GG15174-PA 652 GG15174-PA 504..600 307..432 171 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15840-PA 465 GH15840-PA 1..425 6..434 1374 67 Plus
Dgri\GH11201-PA 567 GH11201-PA 280..384 298..431 172 31.1 Plus
Dgri\GH15707-PA 702 GH15707-PA 565..645 323..432 171 35.5 Plus
Dgri\GH11200-PA 1190 GH11200-PA 973..1077 320..452 171 29.1 Plus
Dgri\GH15771-PA 659 GH15771-PA 511..591 323..432 170 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Prdm13-PA 465 CG13296-PA 1..465 6..470 2426 100 Plus
CG17328-PB 382 CG17328-PB 146..259 328..442 179 32.2 Plus
CG17328-PA 413 CG17328-PA 177..290 328..442 179 32.2 Plus
sna-PA 390 CG3956-PA 120..380 197..429 178 26.6 Plus
CG14711-PA 377 CG14711-PA 217..334 317..435 173 32.2 Plus
CG11902-PB 1426 CG11902-PB 1270..1381 327..440 172 35.1 Plus
CG12605-PC 474 CG12605-PC 333..428 308..432 171 31.2 Plus
CG12605-PE 619 CG12605-PE 478..573 308..432 171 31.2 Plus
CG12605-PD 619 CG12605-PD 478..573 308..432 171 31.2 Plus
CG12605-PA 619 CG12605-PA 478..573 308..432 171 31.2 Plus
CG12605-PB 619 CG12605-PB 478..573 308..432 171 31.2 Plus
crol-PH 686 CG14938-PH 324..433 326..436 171 32.4 Plus
crol-PC 756 CG14938-PC 323..432 326..436 171 32.4 Plus
crol-PG 878 CG14938-PG 445..554 326..436 171 32.4 Plus
crol-PD 878 CG14938-PD 445..554 326..436 171 32.4 Plus
crol-PB 891 CG14938-PB 529..638 326..436 171 32.4 Plus
crol-PF 907 CG14938-PF 474..583 326..436 171 32.4 Plus
crol-PI 962 CG14938-PI 529..638 326..436 171 32.4 Plus
crol-PE 962 CG14938-PE 529..638 326..436 171 32.4 Plus
crol-PA 962 CG14938-PA 529..638 326..436 171 32.4 Plus
CG10348-PB 540 CG10348-PB 307..404 322..451 170 31.3 Plus
CG10348-PC 540 CG10348-PC 307..404 322..451 170 31.3 Plus
scrt-PB 653 CG1130-PB 506..601 308..432 170 31.2 Plus
scrt-PA 653 CG1130-PA 506..601 308..432 170 31.2 Plus
CG44002-PA 345 CG44002-PA 174..303 300..430 168 26.7 Plus
gl-PB 557 CG7672-PB 321..537 212..456 168 22 Plus
gl-PA 604 CG7672-PA 321..537 212..456 168 22 Plus
gl-PC 679 CG7672-PC 321..537 212..456 168 22 Plus
crol-PD 878 CG14938-PD 417..529 326..440 167 32.2 Plus
crol-PF 907 CG14938-PF 446..558 326..440 167 32.2 Plus
CG2202-PA 889 CG2202-PA 623..744 323..445 165 28.6 Plus
dati-PB 1140 CG2052-PB 415..554 301..434 165 28.2 Plus
Kah-PA 442 CG17181-PA 174..235 324..385 164 50 Plus
Kr-PB 502 CG3340-PB 252..352 328..429 162 33.3 Plus
Kr-PA 502 CG3340-PA 252..352 328..429 162 33.3 Plus
CG32767-PG 1280 CG32767-PG 648..754 326..466 162 26.2 Plus
CG32767-PH 1281 CG32767-PH 648..754 326..466 162 26.2 Plus
CG32767-PF 1281 CG32767-PF 648..754 326..466 162 26.2 Plus
CG32767-PE 1281 CG32767-PE 648..754 326..466 162 26.2 Plus
CG32767-PD 1281 CG32767-PD 648..754 326..466 162 26.2 Plus
CG32767-PC 1281 CG32767-PC 648..754 326..466 162 26.2 Plus
esg-PA 470 CG3758-PA 372..460 328..445 160 38.1 Plus
salr-PC 1267 CG4881-PC 583..716 328..470 160 27 Plus
salr-PB 1267 CG4881-PB 583..716 328..470 160 27 Plus
salr-PA 1267 CG4881-PA 583..716 328..470 160 27 Plus
CG17359-PA 339 CG17359-PA 202..333 321..452 159 28.7 Plus
CG14710-PB 415 CG14710-PB 290..395 326..432 159 31.8 Plus
Neu2-PB 308 CG7204-PB 116..224 323..432 158 30 Plus
Neu2-PA 382 CG7204-PA 116..224 323..432 158 30 Plus
dati-PD 791 CG2052-PD 56..190 301..429 158 28.5 Plus
odd-PA 392 CG3851-PA 191..343 297..457 157 23 Plus
Meics-PB 571 CG8474-PB 313..424 323..435 157 29.2 Plus
Meics-PA 583 CG8474-PA 325..436 323..435 157 29.2 Plus
crol-PH 686 CG14938-PH 268..380 326..440 156 31.3 Plus
crol-PC 756 CG14938-PC 267..379 326..440 156 31.3 Plus
crol-PG 878 CG14938-PG 389..501 326..440 156 31.3 Plus
crol-PB 891 CG14938-PB 473..585 326..440 156 31.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12622-PA 441 GI12622-PA 1..419 6..434 1400 66.1 Plus
Dmoj\GI17073-PA 439 GI17073-PA 68..285 204..429 179 26.2 Plus
Dmoj\GI18122-PA 868 GI18122-PA 660..768 315..451 173 28.3 Plus
Dmoj\GI18124-PA 577 GI18124-PA 306..387 322..431 171 31.5 Plus
Dmoj\GI16731-PA 438 GI16731-PA 186..254 324..392 170 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15563-PA 469 GL15563-PA 1..438 6..436 1599 78.3 Plus
Dper\GL16310-PA 436 GL16310-PA 182..282 328..429 173 33.3 Plus
Dper\GL18694-PA 509 GL18694-PA 253..334 322..431 172 31.5 Plus
Dper\GL26593-PA 408 GL26593-PA 326..398 328..429 171 41.2 Plus
Dper\GL16198-PA 409 GL16198-PA 272..354 323..432 168 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12179-PA 469 GA12179-PA 1..438 6..436 1600 78.3 Plus
Dpse\GA27726-PA 436 GA27726-PA 182..282 328..429 173 33.3 Plus
Dpse\GA17803-PA 410 GA17803-PA 328..400 328..429 171 41.2 Plus
Dpse\GA10264-PA 553 GA10264-PA 297..378 322..431 171 31.5 Plus
Dpse\GA11715-PA 633 GA11715-PA 498..578 323..432 171 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14767-PA 467 GM14767-PA 1..467 6..470 2393 96.6 Plus
Dsec\GM14024-PA 619 GM14024-PA 493..573 323..432 173 35.5 Plus
Dsec\GM18664-PA 413 GM18664-PA 177..277 328..429 172 33.3 Plus
Dsec\GM14603-PA 656 GM14603-PA 508..604 307..432 171 31 Plus
Dsec\GM11368-PA 247 GM11368-PA 115..195 323..432 167 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13944-PA 463 GD13944-PA 1..463 6..470 2411 97.6 Plus
Dsim\GD24049-PA 413 GD24049-PA 177..277 328..429 172 33.3 Plus
Dsim\GD13794-PA 652 GD13794-PA 504..600 307..432 172 31 Plus
Dsim\GD13304-PA 283 GD13304-PA 160..237 326..432 166 35.5 Plus
Dsim\GD13305-PA 229 GD13305-PA 103..183 323..432 163 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12744-PA 445 GJ12744-PA 1..420 6..434 1448 69.9 Plus
Dvir\GJ12475-PA 472 GJ12475-PA 197..265 324..392 174 47.8 Plus
Dvir\GJ17748-PA 566 GJ17748-PA 303..384 322..431 170 31.5 Plus
Dvir\GJ17745-PA 1230 GJ17745-PA 1031..1135 320..452 170 29.1 Plus
Dvir\GJ10607-PA 444 GJ10607-PA 188..288 328..429 169 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17273-PA 528 GK17273-PA 28..517 10..460 1371 62.9 Plus
Dwil\GK15538-PA 551 GK15538-PA 297..378 322..431 174 31.5 Plus
Dwil\GK17507-PA 716 GK17507-PA 570..650 323..432 173 33.6 Plus
Dwil\GK16692-PA 750 GK16692-PA 613..693 323..432 172 35.5 Plus
Dwil\GK11845-PA 385 GK11845-PA 234..341 327..435 170 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21548-PA 460 GE21548-PA 1..430 6..438 1931 93.1 Plus
Dyak\GE21431-PA 413 GE21431-PA 177..277 328..429 171 33.3 Plus
Dyak\GE12710-PA 524 GE12710-PA 293..374 322..431 171 31.5 Plus
Dyak\GE20660-PA 475 GE20660-PA 349..429 323..432 171 35.5 Plus
Dyak\GE21392-PA 659 GE21392-PA 511..607 307..432 171 31 Plus

RT01047.hyp Sequence

Translation from 17 to 1413

> RT01047.hyp
MHTTAQLDSLEQKRSASLIFRIEQLLPSTSITPTSMTTSSTETTLTATTS
TASPAKRMRMSNPRPGVYASQYTPKDTCSMAIPTSALLGSTVMPTDGSRS
HCQLSNGELIVSGSLLRQIKLSEDVYSFNAIFELHGGQVRVRLVRDVARE
DEIVAWFGEELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHL
ALGCGRSAMDILWMRLHYALKAAARSHTETQHSPIPATSSTSSASPTHSP
PPQMPPRFSAFRPIAALTQSLPMVPVTTAATPLSYLPSMSMATAPLSTNP
MNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKPLK
CKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEG
ETDADYQCHVCHKSFPRRRDLQRHMETRHGGHHSHSHSESRSSSTSTSST
TTMTATVTTSTSKSS*

RT01047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13296-PA 465 CG13296-PA 1..465 1..465 2426 100 Plus
CG17328-PB 382 CG17328-PB 146..259 323..437 179 32.2 Plus
CG17328-PA 413 CG17328-PA 177..290 323..437 179 32.2 Plus
sna-PA 390 CG3956-PA 120..380 192..424 178 26.6 Plus
CG14711-PA 377 CG14711-PA 217..334 312..430 173 32.2 Plus