BDGP Sequence Production Resources |
Search the DGRC for RT01048
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 10 |
Well: | 48 |
Vector: | pCR2.1 |
Associated Gene/Transcript | gcm-RA |
Protein status: | RT01048.pep: gold |
Sequenced Size: | 1540 |
Gene | Date | Evidence |
---|---|---|
CG12245 | 2006-05-19 | RT target |
gcm | 2008-04-29 | Release 5.5 accounting |
gcm | 2008-08-15 | Release 5.9 accounting |
gcm | 2008-12-18 | 5.12 accounting |
1540 bp assembled on 2008-07-28
GenBank Submission: BT029286
> RT01048.complete TCAGTCGACATGGTTTTGAACGGCATGCCTATAACAATGCCAGTACCGAT GCCAGTGCCCATGCCTGTGCCCAGTCCTCCGGCCACCAAGTCCCGGGTGG CGATCGACTGGGACATCAACGATTCCAAGATGCCGTCGGTGGGGGAGTTT GACGATTTCAATGACTGGTCCAACGGACATTGCCGGCTCATCTACTCCGT GCAGAGTGATGAGGCCAGGAAACATGCCAGCGGTTGGGCCATGCGAAACA CCAACAACCACAACGTGAATATCCTAAAGAAGAGCTGCCTGGGAGTGCTC CTCTGCAGTGCCAAGTGCAAGTTGCCCAATGGAGCCAGTGTGCATCTGAG ACCCGCCATTTGCGACAAGGCCAGAAGGAAGCAGCAGGGCAAACAGTGTC CCAATAGAAATTGCAATGGTCGCTTGGAAATCCAGGCTTGCCGCGGCCAC TGCGGCTATCCAGTGACCCACTTCTGGCGCAGGGACGGAAATGGAATCTA TTTCCAGGCCAAGGGCACCCACGATCACCCCAGACCCGAAGCCAAGGGAT CCACGGAAGCCAGGCGACTTTTGGCAGGAGGAAGACGTGTGCGAAGTTTG GCCGTAATGTTGGCCAGGGAATCGGCGCTGAGCGACAAGCTGAGTAGCCT GAGACCCACAAAACGGCAGGCCAAGACTCAGTCCATCCAGGAGAGCAAGC GCAGAAGGATGGGTGCTTCCGATGTGCTCGAAACCAAGCAGGAGTTAGTG GTGCCACCCACCACCTACCTGCCCACATCGACGCCCACACATAGCACCAA CTTTAATCAATCTCAGGGTTCATATGTCCCAGCAGGACAAGGATCAGTGA TCAGTCAGTGGAATAGAGAGATTCACTACGAAACGGAGGATCCATGCTAT GCCAATGGAATGTACTCCTACGATATGCTCCACTCACCTCTCTCAGCGCA TAGCTCCACGGGCAGTTATTACCAGGAGAACAAACCGCAGCAACTGCAGC ACTCACAATACCAGCAGCAACTCTCACCGCAGCAACATGTACCAGTCAGC TATGATCCCAGCCAGCCAATCTCCTCCAGCCTTCAGTGCGGAATGCCTTC GTATGAAATATGCGACGATACGTCCAGTTTGACCAGCAGCTCGGGCTACT GTTCCGAGGATTATGGCTACTACAATGGATATCTACCCAACTCGCTGGAC GTGAGCAATGGAAGCCAAAGCCAGAATCTTAGCCAGGATGCAAGTTTCTA CACAACCAGCTCGGAGATCTTCAGTGTGTTTGAGTCAACTCTGAATGGCG GAGGGACCAGTGGCGTGGATCTCATCTACGACGAAGCAACCGCCTATCAG CAACATCAGCAACAGGGAACTTTTCCGCATCTCACCAATTATCAACAGGA GCCGCAGGATCAGATGCAGTCCGCCGACTACTACTACAGCAATACGGGAG TGGACAACTCGTGGAACATTCAAATGGACGCGACATATCACCCAGTCAAC AGCACGGATCCCATCTATTGCTAGAAGCTTTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gcm-RA | 2228 | gcm-RA | 160..1674 | 10..1524 | 7575 | 100 | Plus |
gcm2-RA | 2455 | gcm2-RA | 747..822 | 231..306 | 230 | 86.8 | Plus |
gcm2-RB | 2958 | gcm2-RB | 1289..1364 | 231..306 | 230 | 86.8 | Plus |
gcm2-RA | 2455 | gcm2-RA | 961..998 | 442..479 | 160 | 94.7 | Plus |
gcm2-RB | 2958 | gcm2-RB | 1503..1540 | 442..479 | 160 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9578831..9579949 | 1524..406 | 5595 | 100 | Minus |
chr2L | 23010047 | chr2L | 9580023..9580420 | 407..10 | 1990 | 100 | Minus |
chr2L | 23010047 | chr2L | 9609755..9610042 | 231..515 | 310 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9580003..9581121 | 1524..406 | 5595 | 100 | Minus |
2L | 23513712 | 2L | 9581195..9581592 | 407..10 | 1990 | 100 | Minus |
2L | 23513712 | 2L | 9610830..9611204 | 144..515 | 325 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9580003..9581121 | 1524..406 | 5595 | 100 | Minus |
2L | 23513712 | 2L | 9581195..9581592 | 407..10 | 1990 | 100 | Minus |
2L | 23513712 | 2L | 9610917..9610992 | 231..306 | 230 | 86.8 | Plus |
2L | 23513712 | 2L | 9611131..9611168 | 442..479 | 160 | 94.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9578831..9579947 | 408..1524 | 100 | <- | Minus |
chr2L | 9580023..9580428 | 2..407 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 1..1515 | 10..1524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 1..1515 | 10..1524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 1..1515 | 10..1524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 1..1515 | 10..1524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 1..1515 | 10..1524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 143..1665 | 2..1524 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 143..1665 | 2..1524 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 146..1668 | 2..1524 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 143..1665 | 2..1524 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gcm-RA | 146..1668 | 2..1524 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9580003..9581119 | 408..1524 | 100 | <- | Minus |
2L | 9581195..9581600 | 2..407 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9580003..9581119 | 408..1524 | 100 | <- | Minus |
2L | 9581195..9581600 | 2..407 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9580003..9581119 | 408..1524 | 100 | <- | Minus |
2L | 9581195..9581600 | 2..407 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9580003..9581119 | 408..1524 | 100 | <- | Minus |
arm_2L | 9581195..9581600 | 2..407 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9580003..9581119 | 408..1524 | 100 | <- | Minus |
2L | 9581195..9581600 | 2..407 | 99 | Minus |
Translation from 0 to 1523
> RT01048.pep SVDMVLNGMPITMPVPMPVPMPVPSPPATKSRVAIDWDINDSKMPSVGEF DDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVL LCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGH CGYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSL AVMLARESALSDKLSSLRPTKRQAKTQSIQESKRRRMGASDVLETKQELV VPPTTYLPTSTPTHSTNFNQSQGSYVPAGQGSVISQWNREIHYETEDPCY ANGMYSYDMLHSPLSAHSSTGSYYQENKPQQLQHSQYQQQLSPQQHVPVS YDPSQPISSSLQCGMPSYEICDDTSSLTSSSGYCSEDYGYYNGYLPNSLD VSNGSQSQNLSQDASFYTTSSEIFSVFESTLNGGGTSGVDLIYDEATAYQ QHQQQGTFPHLTNYQQEPQDQMQSADYYYSNTGVDNSWNIQMDATYHPVN STDPIYC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21907-PA | 498 | GF21907-PA | 21..498 | 28..507 | 1692 | 74.4 | Plus |
Dana\GF22779-PA | 593 | GF22779-PA | 67..226 | 36..192 | 642 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24019-PA | 710 | GG24019-PA | 207..710 | 4..507 | 2209 | 89 | Plus |
Dere\GG10041-PA | 477 | GG10041-PA | 52..270 | 21..243 | 653 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11056-PA | 536 | GH11056-PA | 21..514 | 29..495 | 1220 | 56.2 | Plus |
Dgri\GH10675-PA | 647 | GH10675-PA | 106..297 | 36..227 | 675 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gcm-PB | 504 | CG12245-PB | 1..504 | 4..507 | 2726 | 100 | Plus |
gcm-PA | 504 | CG12245-PA | 1..504 | 4..507 | 2726 | 100 | Plus |
gcm2-PA | 606 | CG3858-PA | 53..260 | 21..233 | 637 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17574-PA | 527 | GI17574-PA | 42..507 | 32..495 | 1238 | 59.5 | Plus |
Dmoj\GI11073-PA | 648 | GI11073-PA | 71..236 | 31..195 | 667 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19218-PA | 523 | GL19218-PA | 1..523 | 4..507 | 1483 | 67.9 | Plus |
Dper\GL18919-PA | 614 | GL18919-PA | 44..203 | 36..192 | 643 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11505-PA | 521 | GA11505-PA | 1..521 | 4..507 | 1474 | 68.3 | Plus |
Dpse\GA17734-PA | 617 | GA17734-PA | 47..234 | 36..218 | 643 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12386-PA | 506 | GM12386-PA | 1..506 | 4..507 | 2631 | 96.6 | Plus |
Dsec\GM17569-PA | 602 | GM17569-PA | 50..268 | 21..243 | 649 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22349-PA | 504 | GD22349-PA | 1..504 | 4..507 | 2627 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17916-PA | 538 | GJ17916-PA | 19..517 | 20..495 | 1381 | 60.7 | Plus |
Dvir\GJ18313-PA | 626 | GJ18313-PA | 72..284 | 36..243 | 666 | 56.3 | Plus |
Translation from 4 to 1523
> RT01048.hyp SKMVLNGMPITMPVPMPVPMPVPSPPATKSRVAIDWDINDSKMPSVGEFD DFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLL CSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHC GYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLA VMLARESALSDKLSSLRPTKRQAKTQSIQESKRRRMGASDVLETKQELVV PPTTYLPTSTPTHSTNFNQSQGSYVPAGQGSVISQWNREIHYETEDPCYA NGMYSYDMLHSPLSAHSSTGSYYQENKPQQLQHSQYQQQLSPQQHVPVSY DPSQPISSSLQCGMPSYEICDDTSSLTSSSGYCSEDYGYYNGYLPNSLDV SNGSQSQNLSQDASFYTTSSEIFSVFESTLNGGGTSGVDLIYDEATAYQQ HQQQGTFPHLTNYQQEPQDQMQSADYYYSNTGVDNSWNIQMDATYHPVNS TDPIYC*