Clone RT01103 Report

Search the DGRC for RT01103

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:3
Vector:pCR2.1
Associated Gene/Transcriptzen2-RB
Protein status:RT01103.pep: gold
Sequenced Size:849

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1048 2006-05-19 RT target
zen2 2008-04-29 Release 5.5 accounting
zen2 2008-12-18 5.12 accounting

Clone Sequence Records

RT01103.complete Sequence

849 bp (849 high quality bases) assembled on 2008-11-04

GenBank Submission: BT028840.2

> RT01103.complete
AGTCGACATGTTTGCCATTCAAAGCGAAAACTATTTTGTGGACAATTACT
CAGTCAGTGATTTAATGGTGGGATTTAAAAAATTACTGCTTATTTAAATA
AAAACTAAGATTTAATTGATCTATATATTTATAGATGTATCCTTGCGTCG
AGTTAAACGTAGAAGCCGCTCCCACGGCAACAACAAGGTCTTCGGAGAAA
TCAAAGAGATCTCGCACGGCATTCAGCAGTCTTCAGCTAATCGAACTAGA
AAGGGAGTTCCATCTCAACAAATATTTAGCCCGAACCAGGCGAATCGAGA
TATCACAGCGTTTGGCACTCACAGAGAGACAGGTTAAGATCTGGTTCCAA
AATCGTCGCATGAAACTCAAGAAGTCGACCAATAGGAAGGGTGCCATTGG
AGCGCTGACCACATCTATTCCACTTTCTTCCCAGTCGAGCGAAGATCTTC
AAAAGGACGACCAGATCGTAGAGCGTCTCCTTCGATATGCCAACACAAAT
GTGGAAACAGCTCCACTCCGGCAGGTTGATCACGGTGTCCTGGAGGAGGG
TCAAATTACACCACCCTATCAGAGCTACGATTACCTCCATGAATTTTCTC
CTGAGCCCATGGCTCTTCCCCAACTGCCCTTCAATGAATTCGATGCTAAC
TGGGCGAGTTCATGGCTGGGCCTTGAGCCAACGATTCCTATCGCAGAAAA
TGTAATTGAACACAATACACAGGATCAGCCAATGATACAGAATTTCTGCT
GGGACTCGAATAGCTCTTCTGCTTCATCGTCGGATATTTTGGATGTTGAC
TATGACTTTATTCAAAATTTGTTGAACTTTTAAAAGCTTTATCGACCAT

RT01103.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
zen2-RB 945 zen2-RB 3..829 8..834 4135 100 Plus
zen2-RA 1189 zen2-RA 366..1073 127..834 3510 99.7 Plus
zen2.a 923 zen2.a 108..807 135..834 3500 100 Plus
zen2-RA 1189 zen2-RA 314..373 8..67 300 100 Plus
zen2.a 923 zen2.a 63..107 8..52 225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2569025..2569851 834..8 4135 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6743248..6744074 834..8 4135 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6484079..6484905 834..8 4135 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:07:21 has no hits.

RT01103.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:08:10 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2569019..2569857 1..843 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:18 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RA 60..759 134..833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:18:44 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RA 60..759 134..833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:54 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RA 60..759 134..833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:47:53 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RA 60..759 134..833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:16 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RA 60..759 134..833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:59:16 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RB 1..835 6..843 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:18:44 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RB 1..835 6..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:54 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RB 1..833 8..843 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 17:36:17 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RB 1..835 6..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:16 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
zen2-RB 1..833 8..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:10 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6743242..6744080 1..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:10 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6743242..6744080 1..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:10 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6743242..6744080 1..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:54 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2568964..2569802 1..843 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:49:59 Download gff for RT01103.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6484073..6484911 1..843 99   Minus

RT01103.hyp Sequence

Translation from 134 to 833

> RT01103.hyp
MYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLAR
TRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKGAIGALTTSIPLSSQ
SSEDLQKDDQIVERLLRYANTNVETAPLRQVDHGVLEEGQITPPYQSYDY
LHEFSPEPMALPQLPFNEFDANWASSWLGLEPTIPIAENVIEHNTQDQPM
IQNFCWDSNSSSASSSDILDVDYDFIQNLLNF*

RT01103.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
zen2-PB 232 CG1048-PB 1..232 1..232 1198 100 Plus
zen2-PA 252 CG1048-PA 21..252 1..232 1198 100 Plus
zen-PA 353 CG1046-PA 75..147 10..80 230 67.1 Plus
Antp-PK 361 CG1028-PK 275..347 18..90 218 57.5 Plus
Antp-PG 361 CG1028-PG 275..347 18..90 218 57.5 Plus

RT01103.pep Sequence

Translation from 134 to 832

> RT01103.pep
MYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLAR
TRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKGAIGALTTSIPLSSQ
SSEDLQKDDQIVERLLRYANTNVETAPLRQVDHGVLEEGQITPPYQSYDY
LHEFSPEPMALPQLPFNEFDANWASSWLGLEPTIPIAENVIEHNTQDQPM
IQNFCWDSNSSSASSSDILDVDYDFIQNLLNF*

RT01103.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17797-PA 262 GF17797-PA 21..262 1..232 719 59.1 Plus
Dana\GF17795-PA 356 GF17795-PA 95..195 22..126 248 52.8 Plus
Dana\GF17789-PA 378 GF17789-PA 292..364 18..90 234 57.5 Plus
Dana\GF17798-PA 790 GF17798-PA 198..256 24..82 229 67.8 Plus
Dana\GF17790-PA 447 GF17790-PA 315..380 15..80 225 59.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10258-PA 252 GG10258-PA 21..252 1..232 982 81.5 Plus
Dere\GG10235-PA 353 GG10235-PA 89..182 22..119 244 56 Plus
Dere\Antp-PA 374 GG10169-PA 288..360 18..90 234 57.5 Plus
Dere\GG10180-PA 467 GG10180-PA 365..431 14..80 232 59.7 Plus
Dere\GG10269-PA 811 GG10269-PA 223..281 24..82 230 67.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18130-PA 314 GH18130-PA 20..313 7..231 313 34.9 Plus
Dgri\GH19481-PA 346 GH19481-PA 95..190 22..119 243 55.9 Plus
Dgri\GH19475-PA 385 GH19475-PA 299..371 18..90 233 57.5 Plus
Dgri\GH19484-PA 787 GH19484-PA 169..227 24..82 231 67.8 Plus
Dgri\GH19477-PA 576 GH19477-PA 325..390 15..80 229 59.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
zen2-PB 232 CG1048-PB 1..232 1..232 1198 100 Plus
zen2-PA 252 CG1048-PA 21..252 1..232 1198 100 Plus
zen-PA 353 CG1046-PA 75..147 10..80 230 67.1 Plus
Scr-PB 417 CG1030-PB 315..381 14..80 219 59.7 Plus
Scr-PA 417 CG1030-PA 315..381 14..80 219 59.7 Plus
Antp-PK 361 CG1028-PK 275..347 18..90 218 57.5 Plus
Antp-PG 361 CG1028-PG 275..347 18..90 218 57.5 Plus
Antp-PN 374 CG1028-PN 288..360 18..90 218 57.5 Plus
Antp-PD 374 CG1028-PD 288..360 18..90 218 57.5 Plus
pb-PD 772 CG31481-PD 165..250 2..85 215 51.2 Plus
ind-PB 320 CG11551-PB 224..298 20..94 214 58.7 Plus
Antp-PF 365 CG1028-PF 282..351 21..90 214 57.1 Plus
Antp-PE 365 CG1028-PE 282..351 21..90 214 57.1 Plus
Antp-PJ 378 CG1028-PJ 295..364 21..90 214 57.1 Plus
Antp-PI 378 CG1028-PI 295..364 21..90 214 57.1 Plus
Antp-PL 378 CG1028-PL 295..364 21..90 214 57.1 Plus
Antp-PM 378 CG1028-PM 295..364 21..90 214 57.1 Plus
pb-PC 777 CG31481-PC 194..255 24..85 213 66.1 Plus
pb-PB 777 CG31481-PB 194..255 24..85 213 66.1 Plus
pb-PA 782 CG31481-PA 199..260 24..85 213 66.1 Plus
Dfd-PA 586 CG2189-PA 343..423 1..80 210 50.6 Plus
Ubx-PF 355 CG10388-PF 240..318 2..80 205 50.6 Plus
abd-A-PD 330 CG10325-PD 139..195 24..80 200 64.9 Plus
abd-A-PC 330 CG10325-PC 139..195 24..80 200 64.9 Plus
abd-A-PA 330 CG10325-PA 139..195 24..80 200 64.9 Plus
abd-A-PB 590 CG10325-PB 399..455 24..80 200 64.9 Plus
en-PA 552 CG9015-PA 444..544 13..113 199 41.6 Plus
en-PB 552 CG9015-PB 444..544 13..113 199 41.6 Plus
lab-PB 213 CG1264-PB 81..151 19..90 197 58.3 Plus
ftz-PA 410 CG2047-PA 254..367 23..152 197 37 Plus
lab-PA 629 CG1264-PA 497..567 19..90 197 58.3 Plus
Ubx-PB 346 CG10388-PB 253..309 24..80 195 63.2 Plus
Ubx-PD 363 CG10388-PD 270..326 24..80 195 63.2 Plus
Ubx-PC 372 CG10388-PC 279..335 24..80 195 63.2 Plus
Ubx-PE 380 CG10388-PE 287..343 24..80 195 63.2 Plus
Ubx-PA 389 CG10388-PA 296..352 24..80 195 63.2 Plus
exex-PA 525 CG8254-PA 438..497 22..81 195 61.7 Plus
inv-PE 576 CG17835-PE 457..575 9..127 194 37 Plus
inv-PB 576 CG17835-PB 457..575 9..127 194 37 Plus
inv-PD 576 CG17835-PD 457..575 9..127 194 37 Plus
unpg-PA 485 CG1650-PA 315..376 19..80 193 62.9 Plus
btn-PA 158 CG5264-PA 67..143 12..80 182 53.2 Plus
ro-PB 350 CG6348-PB 186..248 18..80 179 52.4 Plus
ro-PA 350 CG6348-PA 186..248 18..80 179 52.4 Plus
Abd-B-PJ 270 CG11648-PJ 165..226 24..85 175 51.6 Plus
Abd-B-PI 270 CG11648-PI 165..226 24..85 175 51.6 Plus
Abd-B-PE 270 CG11648-PE 165..226 24..85 175 51.6 Plus
Abd-B-PD 270 CG11648-PD 165..226 24..85 175 51.6 Plus
Abd-B-PA 270 CG11648-PA 165..226 24..85 175 51.6 Plus
Abd-B-PC 270 CG11648-PC 165..226 24..85 175 51.6 Plus
Abd-B-PG 286 CG11648-PG 165..226 24..85 175 51.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13996-PA 278 GI13996-PA 20..231 20..232 299 39.5 Plus
Dmoj\GI22889-PA 234 GI22889-PA 32..233 20..231 293 38.7 Plus
Dmoj\GI24719-PA 336 GI24719-PA 91..186 22..119 249 55.4 Plus
Dmoj\GI24713-PA 378 GI24713-PA 292..364 18..90 233 57.5 Plus
Dmoj\GI24715-PA 418 GI24715-PA 317..382 15..80 227 59.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21773-PA 270 GL21773-PA 21..270 1..232 584 52 Plus
Dper\GL22044-PA 378 GL22044-PA 85..185 22..126 254 53.8 Plus
Dper\GL22036-PA 395 GL22036-PA 309..381 18..90 234 57.5 Plus
Dper\GL22041-PA 602 GL22041-PA 349..459 1..103 229 41.4 Plus
Dper\GL22040-PA 472 GL22040-PA 327..392 15..80 228 59.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10340-PA 270 GA10340-PA 21..270 1..232 596 53.2 Plus
Dpse\zen-PB 357 GA10326-PB 85..185 22..126 254 53.8 Plus
Dpse\Antp-PA 392 GA10215-PA 306..378 18..90 234 57.5 Plus
Dpse\Scr-PB 426 GA10228-PB 325..390 15..80 228 59.1 Plus
Dpse\GA23649-PA 315 GA23649-PA 221..307 20..107 223 54.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10529-PA 252 GM10529-PA 21..252 1..232 1031 88.4 Plus
Dsec\GM10527-PA 351 GM10527-PA 89..182 22..119 244 55 Plus
Dsec\GM10522-PA 374 GM10522-PA 288..360 18..90 234 57.5 Plus
Dsec\GM10524-PA 525 GM10524-PA 364..430 14..80 230 59.7 Plus
Dsec\GM10530-PA 833 GM10530-PA 246..304 24..82 229 67.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19524-PA 252 GD19524-PA 21..252 1..232 1065 90.1 Plus
Dsim\GD19522-PA 351 GD19522-PA 89..182 22..119 247 56.6 Plus
Dsim\GD19515-PA 374 GD19515-PA 288..360 18..90 234 57.5 Plus
Dsim\GD19518-PA 463 GD19518-PA 361..427 14..80 231 59.7 Plus
Dsim\GD19525-PA 789 GD19525-PA 202..260 24..82 230 67.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23303-PA 322 GJ23303-PA 40..316 11..231 320 36.9 Plus
Dvir\zen-PA 340 GJ23935-PA 89..184 22..119 244 55.9 Plus
Dvir\Antp-PA 376 GJ23927-PA 290..362 18..90 233 57.5 Plus
Dvir\GJ23937-PA 780 GJ23937-PA 174..232 24..82 229 67.8 Plus
Dvir\GJ11617-PA 317 GJ11617-PA 224..285 20..81 222 67.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12250-PA 233 GK12250-PA 16..165 2..142 304 48 Plus
Dwil\GK10829-PA 351 GK10829-PA 77..175 22..124 252 53.8 Plus
Dwil\GK10824-PA 374 GK10824-PA 288..360 18..90 234 57.5 Plus
Dwil\GK10831-PA 816 GK10831-PA 198..256 24..82 230 67.8 Plus
Dwil\GK10826-PA 428 GK10826-PA 312..377 15..80 226 59.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25832-PA 252 GE25832-PA 21..252 1..232 937 82.3 Plus
Dyak\GE25830-PA 355 GE25830-PA 89..182 22..119 245 54.5 Plus
Dyak\GE25826-PA 375 GE25826-PA 289..361 18..90 234 57.5 Plus
Dyak\GE25827-PA 419 GE25827-PA 317..383 14..80 233 59.7 Plus
Dyak\GE19990-PA 324 GE19990-PA 228..289 20..81 222 67.7 Plus