BDGP Sequence Production Resources |
Search the DGRC for RT01105
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 11 |
Well: | 5 |
Vector: | pCR2.1 |
Associated Gene/Transcript | Fer2-RB |
Protein status: | RT01105.pep: gold |
Sequenced Size: | 857 |
Gene | Date | Evidence |
---|---|---|
CG5952 | 2006-05-19 | RT target |
Fer2 | 2008-04-29 | Release 5.5 accounting |
Fer2 | 2008-08-15 | Release 5.9 accounting |
Fer2 | 2008-12-18 | 5.12 accounting |
857 bp (857 high quality bases) assembled on 2008-11-04
GenBank Submission: BT028842.2
> RT01105.complete GAAGTTATCAGTCGACATGTCGCGAAATCAATTGCCGGATTCGTCGTCTT CACCGCCCATTAGCCATTTACCCTTCCACAATTTCGACGATGATCTGATT AACGATTTGCCCTCCTGCATTTATGCGGGTCAGCATCAAGGCGGAGGCGC CACCGGTGGAGGTGGTGGATCGGGAGGTGGCGGTGGCAGTTCTGGGCTGC GTCTGAGCTCCAACAACCTGCGTCACATCCAGCAGCATTATATGCAACAT AGCGGAGAAAATCTGCTCGACTCCTCTACCAATCCAATGGGGGTGCACAA TTCCGGGGGAGGAGCACCCTTAATGTGCAACAGCCCCAGTGCCAGCAGCA GTGGAGGAGGGTGCGGCAACGCAGGATCTGCTACTCCTGGCGGTGCAGGT GGTCCCAATCCTGGATATGGATCCGTGGGAGCTGCAACTGCGTCCAGCTA CAAAATGCAGCGACAGGCGGCCAATGTGCGGGAAAGGAAACGCATCCAGA GTAGCATCAATTCGGCTTTCGATGAGCTAAGGGTCCATGTACCCACCTTT CCGTACGAGAAACGTCTGAGCAAGATCGACACTCTGCGGCTTGCCATCGC CTATATATCTCTGCTCCGTGAGGTACTACAAACCGACTACGATCCCCTAA CCTATGTGGAGAAGTGTCTGCGCGGAGAGATCAAAGCGGATAGGGCTAAT TGGAATACGAGTGATCTCACAGCTCGTCTGTCGTGGATCAACTGGGAGAA CCTCGGAGTACATCCTGGTAGGCGAACCCTGCTTACCTCGTTGGCTCTCT CCTCGGAACCCATGTGCGGAGCTCATTGCGGAATGCCGTAGAAGCTTTAT CGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer2-RB | 1325 | Fer2-RB | 123..948 | 17..842 | 4130 | 100 | Plus |
Fer2.b | 1340 | Fer2.b | 123..607 | 17..501 | 2425 | 100 | Plus |
Fer2.c | 1305 | Fer2.c | 123..607 | 17..501 | 2425 | 100 | Plus |
Fer2.b | 1340 | Fer2.b | 622..963 | 501..842 | 1710 | 100 | Plus |
Fer2.c | 1305 | Fer2.c | 634..975 | 501..842 | 1710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11974915..11975160 | 501..256 | 1230 | 100 | Minus |
chr3R | 27901430 | chr3R | 11974579..11974792 | 713..500 | 1070 | 100 | Minus |
chr3R | 27901430 | chr3R | 11975222..11975417 | 257..62 | 980 | 100 | Minus |
chr3R | 27901430 | chr3R | 11974395..11974524 | 842..713 | 635 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 11975782..11975828 | 63..17 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 16150307..16150552 | 501..256 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 16149971..16150184 | 713..500 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 16150614..16150809 | 257..62 | 980 | 100 | Minus |
3R | 32079331 | 3R | 16149787..16149916 | 842..713 | 650 | 100 | Minus |
3R | 32079331 | 3R | 16151174..16151220 | 63..17 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15891138..15891383 | 501..256 | 1230 | 100 | Minus |
3R | 31820162 | 3R | 15890802..15891015 | 713..500 | 1070 | 100 | Minus |
3R | 31820162 | 3R | 15891445..15891640 | 257..62 | 980 | 100 | Minus |
3R | 31820162 | 3R | 15890618..15890747 | 842..713 | 650 | 100 | Minus |
3R | 31820162 | 3R | 15892005..15892051 | 63..17 | 235 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11974385..11974523 | 714..850 | 96 | <- | Minus |
chr3R | 11974579..11974790 | 502..713 | 100 | <- | Minus |
chr3R | 11974915..11975158 | 258..501 | 100 | <- | Minus |
chr3R | 11975222..11975415 | 64..257 | 100 | <- | Minus |
chr3R | 11975782..11975833 | 10..63 | 92 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RA | 1..485 | 17..504 | 99 | -> | Plus |
Fer2-RA | 504..840 | 505..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 1..825 | 17..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 1..825 | 17..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RA | 504..840 | 505..841 | 100 | Plus | |
Fer2-RA | 1..485 | 17..504 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 1..825 | 17..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RA | 1..485 | 17..504 | 99 | -> | Plus |
Fer2-RA | 504..840 | 505..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 118..958 | 10..850 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 118..958 | 10..850 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RA | 1..485 | 17..504 | 99 | -> | Plus |
Fer2-RA | 504..840 | 505..841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2-RB | 88..928 | 10..850 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16150307..16150550 | 258..501 | 100 | <- | Minus |
3R | 16150614..16150807 | 64..257 | 100 | <- | Minus |
3R | 16149971..16150182 | 502..713 | 100 | <- | Minus |
3R | 16151174..16151225 | 10..63 | 92 | Minus | |
3R | 16149777..16149915 | 714..850 | 97 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16150307..16150550 | 258..501 | 100 | <- | Minus |
3R | 16150614..16150807 | 64..257 | 100 | <- | Minus |
3R | 16149971..16150182 | 502..713 | 100 | <- | Minus |
3R | 16151174..16151225 | 10..63 | 92 | Minus | |
3R | 16149777..16149915 | 714..850 | 97 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16150307..16150550 | 258..501 | 100 | <- | Minus |
3R | 16150614..16150807 | 64..257 | 100 | <- | Minus |
3R | 16149971..16150182 | 502..713 | 100 | <- | Minus |
3R | 16151174..16151225 | 10..63 | 92 | Minus | |
3R | 16149777..16149915 | 714..850 | 97 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11975499..11975637 | 714..850 | 97 | <- | Minus |
arm_3R | 11975693..11975904 | 502..713 | 100 | <- | Minus |
arm_3R | 11976029..11976272 | 258..501 | 100 | <- | Minus |
arm_3R | 11976336..11976529 | 64..257 | 100 | <- | Minus |
arm_3R | 11976896..11976947 | 10..63 | 92 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15890802..15891013 | 502..713 | 100 | <- | Minus |
3R | 15891138..15891381 | 258..501 | 100 | <- | Minus |
3R | 15891445..15891638 | 64..257 | 100 | <- | Minus |
3R | 15892005..15892056 | 10..63 | 92 | Minus | |
3R | 15890608..15890746 | 714..850 | 97 | <- | Minus |
Translation from 1 to 840
> RT01105.pep KLSVDMSRNQLPDSSSSPPISHLPFHNFDDDLINDLPSCIYAGQHQGGGA TGGGGGSGGGGGSSGLRLSSNNLRHIQQHYMQHSGENLLDSSTNPMGVHN SGGGAPLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGYGSVGAATASSY KMQRQAANVRERKRIQSSINSAFDELRVHVPTFPYEKRLSKIDTLRLAIA YISLLREVLQTDYDPLTYVEKCLRGEIKADRANWNTSDLTARLSWINWEN LGVHPGRRTLLTSLALSSEPMCGAHCGMP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18852-PA | 278 | GF18852-PA | 1..278 | 6..279 | 1044 | 89 | Plus |
Dana\GF17655-PA | 251 | GF17655-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dana\GF16621-PA | 195 | GF16621-PA | 88..143 | 153..209 | 189 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20146-PA | 279 | GG20146-PA | 1..279 | 6..279 | 1414 | 97.1 | Plus |
Dere\GG13863-PA | 251 | GG13863-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dere\GG17199-PA | 195 | GG17199-PA | 87..142 | 153..209 | 189 | 63.2 | Plus |
Dere\GG23955-PA | 174 | GG23955-PA | 59..129 | 153..228 | 152 | 47.4 | Plus |
Dere\GG21703-PA | 196 | GG21703-PA | 135..196 | 151..213 | 144 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18836-PA | 283 | GH18836-PA | 1..283 | 6..279 | 979 | 77.3 | Plus |
Dgri\GH19006-PA | 262 | GH19006-PA | 76..140 | 147..212 | 231 | 63.6 | Plus |
Dgri\GH19315-PA | 197 | GH19315-PA | 85..140 | 153..209 | 189 | 63.2 | Plus |
Dgri\GH13020-PA | 175 | GH13020-PA | 63..124 | 153..215 | 148 | 50.8 | Plus |
Dgri\GH10530-PA | 214 | GH10530-PA | 153..214 | 151..213 | 145 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer2-PB | 274 | CG5952-PB | 1..274 | 6..279 | 1462 | 100 | Plus |
Fer2-PC | 279 | CG5952-PC | 1..279 | 6..279 | 1442 | 97.8 | Plus |
Fer2-PE | 273 | CG5952-PE | 1..273 | 6..279 | 1441 | 99.3 | Plus |
Fer2-PD | 283 | CG5952-PD | 1..283 | 6..279 | 1437 | 96.5 | Plus |
Fer1-PA | 251 | CG33323-PA | 76..140 | 147..212 | 211 | 63.6 | Plus |
Fer1-PB | 256 | CG33323-PB | 81..145 | 147..212 | 211 | 63.6 | Plus |
Fer3-PA | 195 | CG6913-PA | 63..142 | 127..209 | 177 | 50.6 | Plus |
amos-PA | 198 | CG10393-PA | 73..198 | 72..213 | 158 | 33.1 | Plus |
HLH3B-PA | 376 | CG2655-PA | 134..222 | 110..210 | 153 | 41.6 | Plus |
Hand-PA | 174 | CG18144-PA | 59..120 | 153..215 | 145 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10095-PA | 281 | GI10095-PA | 1..281 | 6..279 | 976 | 76.4 | Plus |
Dmoj\GI23061-PA | 278 | GI23061-PA | 76..140 | 147..212 | 227 | 63.6 | Plus |
Dmoj\GI23534-PA | 187 | GI23534-PA | 78..133 | 153..209 | 190 | 63.2 | Plus |
Dmoj\GI23536-PA | 199 | GI23536-PA | 88..143 | 153..209 | 190 | 63.2 | Plus |
Dmoj\GI18263-PA | 170 | GI18263-PA | 59..146 | 153..238 | 150 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12402-PA | 284 | GL12402-PA | 1..284 | 6..279 | 1031 | 85.9 | Plus |
Dper\GL12422-PA | 253 | GL12422-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dper\GL12254-PA | 190 | GL12254-PA | 74..129 | 153..209 | 189 | 63.2 | Plus |
Dper\GL18976-PA | 173 | GL18976-PA | 43..113 | 136..209 | 147 | 47.3 | Plus |
Dper\GL18743-PA | 206 | GL18743-PA | 145..206 | 151..213 | 146 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19254-PA | 284 | GA19254-PA | 1..284 | 6..279 | 1031 | 85.9 | Plus |
Dpse\GA27498-PA | 253 | GA27498-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dpse\GA19952-PA | 205 | GA19952-PA | 89..144 | 153..209 | 189 | 63.2 | Plus |
Dpse\GA14815-PA | 173 | GA14815-PA | 43..113 | 136..209 | 147 | 47.3 | Plus |
Dpse\GA10296-PA | 206 | GA10296-PA | 145..206 | 151..213 | 146 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25729-PA | 279 | GM25729-PA | 1..279 | 6..279 | 1423 | 97.8 | Plus |
Dsec\GM10936-PA | 247 | GM10936-PA | 76..140 | 147..212 | 227 | 63.6 | Plus |
Dsec\GM26078-PA | 245 | GM26078-PA | 137..192 | 153..209 | 190 | 63.2 | Plus |
Dsec\GM11834-PA | 171 | GM11834-PA | 56..117 | 153..215 | 152 | 52.4 | Plus |
Dsec\GM17083-PA | 197 | GM17083-PA | 136..197 | 151..213 | 144 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20306-PA | 279 | GD20306-PA | 1..279 | 6..279 | 1419 | 97.5 | Plus |
Dsim\GD19915-PA | 251 | GD19915-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dsim\GD20641-PA | 195 | GD20641-PA | 87..142 | 153..209 | 189 | 63.2 | Plus |
Dsim\GD22284-PA | 174 | GD22284-PA | 59..120 | 153..215 | 152 | 52.4 | Plus |
Dsim\GD21828-PA | 197 | GD21828-PA | 136..197 | 151..213 | 143 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23831-PA | 278 | GJ23831-PA | 1..278 | 6..279 | 903 | 78.6 | Plus |
Dvir\GJ24574-PA | 261 | GJ24574-PA | 76..140 | 147..212 | 231 | 63.6 | Plus |
Dvir\GJ10284-PA | 198 | GJ10284-PA | 87..142 | 153..209 | 190 | 63.2 | Plus |
Dvir\GJ19805-PA | 201 | GJ19805-PA | 140..201 | 151..213 | 142 | 49.2 | Plus |
Dvir\GJ17522-PA | 133 | GJ17522-PA | 22..83 | 153..215 | 140 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14012-PA | 285 | GK14012-PA | 1..285 | 6..279 | 993 | 75.9 | Plus |
Dwil\GK14521-PA | 247 | GK14521-PA | 77..141 | 147..212 | 226 | 63.6 | Plus |
Dwil\GK11993-PA | 198 | GK11993-PA | 87..142 | 153..209 | 190 | 63.2 | Plus |
Dwil\GK24655-PA | 198 | GK24655-PA | 137..198 | 151..213 | 143 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26333-PA | 279 | GE26333-PA | 1..279 | 6..279 | 1405 | 96.4 | Plus |
Dyak\GE24907-PA | 251 | GE24907-PA | 76..140 | 147..212 | 228 | 63.6 | Plus |
Dyak\GE10092-PA | 226 | GE10092-PA | 118..173 | 153..209 | 190 | 63.2 | Plus |
Dyak\GE26185-PA | 174 | GE26185-PA | 46..120 | 142..215 | 153 | 47.4 | Plus |
Dyak\GE12726-PA | 198 | GE12726-PA | 137..198 | 151..213 | 144 | 50.8 | Plus |
Translation from 13 to 840
> RT01105.hyp KMSRNQLPDSSSSPPISHLPFHNFDDDLINDLPSCIYAGQHQGGGATGGG GGSGGGGGSSGLRLSSNNLRHIQQHYMQHSGENLLDSSTNPMGVHNSGGG APLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGYGSVGAATASSYKMQR QAANVRERKRIQSSINSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISL LREVLQTDYDPLTYVEKCLRGEIKADRANWNTSDLTARLSWINWENLGVH PGRRTLLTSLALSSEPMCGAHCGMP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer2-PB | 274 | CG5952-PB | 1..274 | 2..275 | 1462 | 100 | Plus |
Fer2-PC | 279 | CG5952-PC | 1..279 | 2..275 | 1442 | 97.8 | Plus |
Fer2-PE | 273 | CG5952-PE | 1..273 | 2..275 | 1441 | 99.3 | Plus |
Fer2-PD | 283 | CG5952-PD | 1..283 | 2..275 | 1437 | 96.5 | Plus |
Fer1-PA | 251 | CG33323-PA | 76..140 | 143..208 | 211 | 63.6 | Plus |