Clone RT01105 Report

Search the DGRC for RT01105

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:5
Vector:pCR2.1
Associated Gene/TranscriptFer2-RB
Protein status:RT01105.pep: gold
Sequenced Size:857

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5952 2006-05-19 RT target
Fer2 2008-04-29 Release 5.5 accounting
Fer2 2008-08-15 Release 5.9 accounting
Fer2 2008-12-18 5.12 accounting

Clone Sequence Records

RT01105.complete Sequence

857 bp (857 high quality bases) assembled on 2008-11-04

GenBank Submission: BT028842.2

> RT01105.complete
GAAGTTATCAGTCGACATGTCGCGAAATCAATTGCCGGATTCGTCGTCTT
CACCGCCCATTAGCCATTTACCCTTCCACAATTTCGACGATGATCTGATT
AACGATTTGCCCTCCTGCATTTATGCGGGTCAGCATCAAGGCGGAGGCGC
CACCGGTGGAGGTGGTGGATCGGGAGGTGGCGGTGGCAGTTCTGGGCTGC
GTCTGAGCTCCAACAACCTGCGTCACATCCAGCAGCATTATATGCAACAT
AGCGGAGAAAATCTGCTCGACTCCTCTACCAATCCAATGGGGGTGCACAA
TTCCGGGGGAGGAGCACCCTTAATGTGCAACAGCCCCAGTGCCAGCAGCA
GTGGAGGAGGGTGCGGCAACGCAGGATCTGCTACTCCTGGCGGTGCAGGT
GGTCCCAATCCTGGATATGGATCCGTGGGAGCTGCAACTGCGTCCAGCTA
CAAAATGCAGCGACAGGCGGCCAATGTGCGGGAAAGGAAACGCATCCAGA
GTAGCATCAATTCGGCTTTCGATGAGCTAAGGGTCCATGTACCCACCTTT
CCGTACGAGAAACGTCTGAGCAAGATCGACACTCTGCGGCTTGCCATCGC
CTATATATCTCTGCTCCGTGAGGTACTACAAACCGACTACGATCCCCTAA
CCTATGTGGAGAAGTGTCTGCGCGGAGAGATCAAAGCGGATAGGGCTAAT
TGGAATACGAGTGATCTCACAGCTCGTCTGTCGTGGATCAACTGGGAGAA
CCTCGGAGTACATCCTGGTAGGCGAACCCTGCTTACCTCGTTGGCTCTCT
CCTCGGAACCCATGTGCGGAGCTCATTGCGGAATGCCGTAGAAGCTTTAT
CGACCAT

RT01105.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2-RB 1325 Fer2-RB 123..948 17..842 4130 100 Plus
Fer2.b 1340 Fer2.b 123..607 17..501 2425 100 Plus
Fer2.c 1305 Fer2.c 123..607 17..501 2425 100 Plus
Fer2.b 1340 Fer2.b 622..963 501..842 1710 100 Plus
Fer2.c 1305 Fer2.c 634..975 501..842 1710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11974915..11975160 501..256 1230 100 Minus
chr3R 27901430 chr3R 11974579..11974792 713..500 1070 100 Minus
chr3R 27901430 chr3R 11975222..11975417 257..62 980 100 Minus
chr3R 27901430 chr3R 11974395..11974524 842..713 635 99.2 Minus
chr3R 27901430 chr3R 11975782..11975828 63..17 235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16150307..16150552 501..256 1230 100 Minus
3R 32079331 3R 16149971..16150184 713..500 1070 100 Minus
3R 32079331 3R 16150614..16150809 257..62 980 100 Minus
3R 32079331 3R 16149787..16149916 842..713 650 100 Minus
3R 32079331 3R 16151174..16151220 63..17 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15891138..15891383 501..256 1230 100 Minus
3R 31820162 3R 15890802..15891015 713..500 1070 100 Minus
3R 31820162 3R 15891445..15891640 257..62 980 100 Minus
3R 31820162 3R 15890618..15890747 842..713 650 100 Minus
3R 31820162 3R 15892005..15892051 63..17 235 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:39:22 has no hits.

RT01105.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:40:17 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11974385..11974523 714..850 96 <- Minus
chr3R 11974579..11974790 502..713 100 <- Minus
chr3R 11974915..11975158 258..501 100 <- Minus
chr3R 11975222..11975415 64..257 100 <- Minus
chr3R 11975782..11975833 10..63 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:20 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RA 1..485 17..504 99 -> Plus
Fer2-RA 504..840 505..841 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:18:47 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:54:41 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:47:58 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RA 504..840 505..841 100   Plus
Fer2-RA 1..485 17..504 99 -> Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:52 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:59:20 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RA 1..485 17..504 99 -> Plus
Fer2-RA 504..840 505..841 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:18:46 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 118..958 10..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:54:41 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 118..958 10..850 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 17:36:39 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RA 1..485 17..504 99 -> Plus
Fer2-RA 504..840 505..841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:52 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2-RB 88..928 10..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:17 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16150307..16150550 258..501 100 <- Minus
3R 16150614..16150807 64..257 100 <- Minus
3R 16149971..16150182 502..713 100 <- Minus
3R 16151174..16151225 10..63 92   Minus
3R 16149777..16149915 714..850 97 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:17 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16150307..16150550 258..501 100 <- Minus
3R 16150614..16150807 64..257 100 <- Minus
3R 16149971..16150182 502..713 100 <- Minus
3R 16151174..16151225 10..63 92   Minus
3R 16149777..16149915 714..850 97 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:17 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16150307..16150550 258..501 100 <- Minus
3R 16150614..16150807 64..257 100 <- Minus
3R 16149971..16150182 502..713 100 <- Minus
3R 16151174..16151225 10..63 92   Minus
3R 16149777..16149915 714..850 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:54:41 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11975499..11975637 714..850 97 <- Minus
arm_3R 11975693..11975904 502..713 100 <- Minus
arm_3R 11976029..11976272 258..501 100 <- Minus
arm_3R 11976336..11976529 64..257 100 <- Minus
arm_3R 11976896..11976947 10..63 92   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:50:02 Download gff for RT01105.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15890802..15891013 502..713 100 <- Minus
3R 15891138..15891381 258..501 100 <- Minus
3R 15891445..15891638 64..257 100 <- Minus
3R 15892005..15892056 10..63 92   Minus
3R 15890608..15890746 714..850 97 <- Minus

RT01105.pep Sequence

Translation from 1 to 840

> RT01105.pep
KLSVDMSRNQLPDSSSSPPISHLPFHNFDDDLINDLPSCIYAGQHQGGGA
TGGGGGSGGGGGSSGLRLSSNNLRHIQQHYMQHSGENLLDSSTNPMGVHN
SGGGAPLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGYGSVGAATASSY
KMQRQAANVRERKRIQSSINSAFDELRVHVPTFPYEKRLSKIDTLRLAIA
YISLLREVLQTDYDPLTYVEKCLRGEIKADRANWNTSDLTARLSWINWEN
LGVHPGRRTLLTSLALSSEPMCGAHCGMP*

RT01105.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18852-PA 278 GF18852-PA 1..278 6..279 1044 89 Plus
Dana\GF17655-PA 251 GF17655-PA 76..140 147..212 228 63.6 Plus
Dana\GF16621-PA 195 GF16621-PA 88..143 153..209 189 63.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20146-PA 279 GG20146-PA 1..279 6..279 1414 97.1 Plus
Dere\GG13863-PA 251 GG13863-PA 76..140 147..212 228 63.6 Plus
Dere\GG17199-PA 195 GG17199-PA 87..142 153..209 189 63.2 Plus
Dere\GG23955-PA 174 GG23955-PA 59..129 153..228 152 47.4 Plus
Dere\GG21703-PA 196 GG21703-PA 135..196 151..213 144 50.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18836-PA 283 GH18836-PA 1..283 6..279 979 77.3 Plus
Dgri\GH19006-PA 262 GH19006-PA 76..140 147..212 231 63.6 Plus
Dgri\GH19315-PA 197 GH19315-PA 85..140 153..209 189 63.2 Plus
Dgri\GH13020-PA 175 GH13020-PA 63..124 153..215 148 50.8 Plus
Dgri\GH10530-PA 214 GH10530-PA 153..214 151..213 145 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2-PB 274 CG5952-PB 1..274 6..279 1462 100 Plus
Fer2-PC 279 CG5952-PC 1..279 6..279 1442 97.8 Plus
Fer2-PE 273 CG5952-PE 1..273 6..279 1441 99.3 Plus
Fer2-PD 283 CG5952-PD 1..283 6..279 1437 96.5 Plus
Fer1-PA 251 CG33323-PA 76..140 147..212 211 63.6 Plus
Fer1-PB 256 CG33323-PB 81..145 147..212 211 63.6 Plus
Fer3-PA 195 CG6913-PA 63..142 127..209 177 50.6 Plus
amos-PA 198 CG10393-PA 73..198 72..213 158 33.1 Plus
HLH3B-PA 376 CG2655-PA 134..222 110..210 153 41.6 Plus
Hand-PA 174 CG18144-PA 59..120 153..215 145 52.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10095-PA 281 GI10095-PA 1..281 6..279 976 76.4 Plus
Dmoj\GI23061-PA 278 GI23061-PA 76..140 147..212 227 63.6 Plus
Dmoj\GI23534-PA 187 GI23534-PA 78..133 153..209 190 63.2 Plus
Dmoj\GI23536-PA 199 GI23536-PA 88..143 153..209 190 63.2 Plus
Dmoj\GI18263-PA 170 GI18263-PA 59..146 153..238 150 40.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12402-PA 284 GL12402-PA 1..284 6..279 1031 85.9 Plus
Dper\GL12422-PA 253 GL12422-PA 76..140 147..212 228 63.6 Plus
Dper\GL12254-PA 190 GL12254-PA 74..129 153..209 189 63.2 Plus
Dper\GL18976-PA 173 GL18976-PA 43..113 136..209 147 47.3 Plus
Dper\GL18743-PA 206 GL18743-PA 145..206 151..213 146 50.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19254-PA 284 GA19254-PA 1..284 6..279 1031 85.9 Plus
Dpse\GA27498-PA 253 GA27498-PA 76..140 147..212 228 63.6 Plus
Dpse\GA19952-PA 205 GA19952-PA 89..144 153..209 189 63.2 Plus
Dpse\GA14815-PA 173 GA14815-PA 43..113 136..209 147 47.3 Plus
Dpse\GA10296-PA 206 GA10296-PA 145..206 151..213 146 50.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25729-PA 279 GM25729-PA 1..279 6..279 1423 97.8 Plus
Dsec\GM10936-PA 247 GM10936-PA 76..140 147..212 227 63.6 Plus
Dsec\GM26078-PA 245 GM26078-PA 137..192 153..209 190 63.2 Plus
Dsec\GM11834-PA 171 GM11834-PA 56..117 153..215 152 52.4 Plus
Dsec\GM17083-PA 197 GM17083-PA 136..197 151..213 144 50.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20306-PA 279 GD20306-PA 1..279 6..279 1419 97.5 Plus
Dsim\GD19915-PA 251 GD19915-PA 76..140 147..212 228 63.6 Plus
Dsim\GD20641-PA 195 GD20641-PA 87..142 153..209 189 63.2 Plus
Dsim\GD22284-PA 174 GD22284-PA 59..120 153..215 152 52.4 Plus
Dsim\GD21828-PA 197 GD21828-PA 136..197 151..213 143 50.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23831-PA 278 GJ23831-PA 1..278 6..279 903 78.6 Plus
Dvir\GJ24574-PA 261 GJ24574-PA 76..140 147..212 231 63.6 Plus
Dvir\GJ10284-PA 198 GJ10284-PA 87..142 153..209 190 63.2 Plus
Dvir\GJ19805-PA 201 GJ19805-PA 140..201 151..213 142 49.2 Plus
Dvir\GJ17522-PA 133 GJ17522-PA 22..83 153..215 140 50.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14012-PA 285 GK14012-PA 1..285 6..279 993 75.9 Plus
Dwil\GK14521-PA 247 GK14521-PA 77..141 147..212 226 63.6 Plus
Dwil\GK11993-PA 198 GK11993-PA 87..142 153..209 190 63.2 Plus
Dwil\GK24655-PA 198 GK24655-PA 137..198 151..213 143 49.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26333-PA 279 GE26333-PA 1..279 6..279 1405 96.4 Plus
Dyak\GE24907-PA 251 GE24907-PA 76..140 147..212 228 63.6 Plus
Dyak\GE10092-PA 226 GE10092-PA 118..173 153..209 190 63.2 Plus
Dyak\GE26185-PA 174 GE26185-PA 46..120 142..215 153 47.4 Plus
Dyak\GE12726-PA 198 GE12726-PA 137..198 151..213 144 50.8 Plus

RT01105.hyp Sequence

Translation from 13 to 840

> RT01105.hyp
KMSRNQLPDSSSSPPISHLPFHNFDDDLINDLPSCIYAGQHQGGGATGGG
GGSGGGGGSSGLRLSSNNLRHIQQHYMQHSGENLLDSSTNPMGVHNSGGG
APLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGYGSVGAATASSYKMQR
QAANVRERKRIQSSINSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISL
LREVLQTDYDPLTYVEKCLRGEIKADRANWNTSDLTARLSWINWENLGVH
PGRRTLLTSLALSSEPMCGAHCGMP*

RT01105.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2-PB 274 CG5952-PB 1..274 2..275 1462 100 Plus
Fer2-PC 279 CG5952-PC 1..279 2..275 1442 97.8 Plus
Fer2-PE 273 CG5952-PE 1..273 2..275 1441 99.3 Plus
Fer2-PD 283 CG5952-PD 1..283 2..275 1437 96.5 Plus
Fer1-PA 251 CG33323-PA 76..140 143..208 211 63.6 Plus