Clone RT01112 Report

Search the DGRC for RT01112

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:12
Vector:pCR2.1
Associated Gene/Transcripteg-RA
Protein status:RT01112.pep: gold
Sequenced Size:1154

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7383 2006-05-19 RT target
eg 2008-04-29 Release 5.5 accounting
eg 2008-04-29 Picked prior to 5.5
eg 2008-08-15 Release 5.9 accounting
eg 2008-12-18 5.12 accounting

Clone Sequence Records

RT01112.complete Sequence

1154 bp (1154 high quality bases) assembled on 2008-07-29

GenBank Submission: BT028846

> RT01112.complete
GAAGTTATCAGTCGACATGAACCAGCTGTGCAAAGTGTGCGGCGAGCCGG
CGGCTGGTTTTCATTTTGGGGCATTTACATGTGAAGGCTGCAAGTCCTTT
TTCGGTCGTACTTACAACAACATAGCGGCGATTGCAGGATGTAAGCACAA
CGGAGATTGCGTGATCAACAAGAAGAACCGCACGGCCTGCAAGGCGTGCC
GCCTGCGCAAGTGCCTCCTGGTCGGGATGTCCAAGAGTGGCTCCCGCTAC
GGTCGCCGGTCCAACTGGTTCAAGATCCATTGTCTGTTGCAGGAGCAGCA
GACGACGTCGGGCCTCGGTGGAGGGAGCTCCGTGGGAAGCGGATCAGGAG
GCGGAGTGAGCAGTGCGAGTCTGGAGCAGCTGGCGCGATTACAGCAGGCC
AGTAACCAGGCGCGGCAAACCTATCAGGACAAGACCAATCCCTGCATCAA
GTCAGCCACGGCCACGACATCACCCAGAATCGAGGGTGCGGCAGTGGGCA
CGGGAATCGGTGGCGGCGCCTCTCCGTCATTCCTGCAAGCGGCAAAGCTC
CACCACCAGCGGCAGTTAAAGCTCGATTCCCGCCTCAGCAACACTCCCAG
CGATTCAGGAGCATCTTCGGCGGGAGATCCCAACGAAGATGGTGTCACCA
GCGTCCTCGGTGGCCAGATCGCAACACCATCATCCACCAACGCCACCAGC
CTGCCCAAGCTGGATCTGCGGCATCCGAACTTTCCGGCCACCTCGGAGCC
GGATGCTGATATGCAGCGGCAGCGCCACCAGGAGCTGCTCGAGATCTTTC
GCAGTCACTCGGAGCCGCTGTACAGTTCATTTGCCCCATTCAGCCACCTG
CCACCTGTGCTGCTCGCCGCCGGAGTTCCACAGCTGCCCATTTTCAAGGA
TCAGTTTAAGGCTGAGCTGCTGTTTCCGACGACCAGCAGTCCTGAGCTCG
AAGAGCCCATCGATCTGTCCTTTAGATCCCGAGCAGACCCTGCCAGTCCG
ATGGCCCACAACTCCAATAGTCCGAGTTTAAGTGAGCCTGCTGCGGCGAG
CCACTGTTTGGGGGAATCGACAAACTTCGTCCGAAAGTCCACGCCCCTTG
ATCTCACCCTGGTGAGGTCACAAACGTTGACAGGCTAAAAGCTTTATCGA
CCAT

RT01112.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
eg-RA 2242 eg-RA 461..1582 17..1138 5610 100 Plus
eg-RB 1905 eg-RB 124..1245 17..1138 5610 100 Plus
knrl-RA 3973 knrl-RA 1175..1333 143..301 465 86.1 Plus
knrl-RA 3973 knrl-RA 1049..1152 17..120 250 82.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21805211..21806256 93..1138 5230 100 Plus
chr3L 24539361 chr3L 20588785..20588993 301..93 475 81.8 Minus
chr3L 24539361 chr3L 21803714..21803791 17..94 390 100 Plus
chr3L 24539361 chr3L 20682857..20682990 297..164 355 84.3 Minus
chr3L 24539361 chr3L 20591204..20591281 94..17 195 83.3 Minus
chr3L 24539361 chr3L 20683275..20683352 94..17 195 83.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21816276..21817321 93..1138 5230 100 Plus
3L 28110227 3L 20599774..20599982 301..93 475 81.8 Minus
3L 28110227 3L 21814779..21814856 17..94 390 100 Plus
3L 28110227 3L 20693845..20693978 297..164 355 84.3 Minus
3L 28110227 3L 20602193..20602270 94..17 195 83.3 Minus
3L 28110227 3L 20694263..20694340 94..17 195 83.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21809376..21810421 93..1138 5230 100 Plus
3L 28103327 3L 20592874..20593032 301..143 465 86.1 Minus
3L 28103327 3L 21807879..21807956 17..94 390 100 Plus
3L 28103327 3L 20686945..20687078 297..164 355 84.3 Minus
3L 28103327 3L 20595293..20595370 94..17 195 83.3 Minus
3L 28103327 3L 20687363..20687440 94..17 195 83.3 Minus
Blast to na_te.dros performed on 2019-03-16 13:39:15 has no hits.

RT01112.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:40:12 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21803714..21803791 17..94 100 -> Plus
chr3L 21805213..21806262 95..1140 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:25 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:08:14 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:53:31 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RB 1..1122 17..1138 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:10 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:16:43 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RB 1..1122 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:09 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 400..1528 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:08:14 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 400..1528 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:53:31 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RB 103..1231 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:09 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RA 400..1528 17..1148 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:43 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
eg-RB 103..1231 17..1148 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:12 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21814779..21814856 17..94 100 -> Plus
3L 21816278..21817328 95..1148 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:12 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21814779..21814856 17..94 100 -> Plus
3L 21816278..21817328 95..1148 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:40:12 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21814779..21814856 17..94 100 -> Plus
3L 21816278..21817328 95..1148 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:53:31 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21807879..21807956 17..94 100 -> Plus
arm_3L 21809378..21810428 95..1148 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:37:44 Download gff for RT01112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21809378..21810428 95..1148 99   Plus
3L 21807879..21807956 17..94 100 -> Plus

RT01112.pep Sequence

Translation from 1 to 1137

> RT01112.pep
KLSVDMNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHN
GDCVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQ
TTSGLGGGSSVGSGSGGGVSSASLEQLARLQQASNQARQTYQDKTNPCIK
SATATTSPRIEGAAVGTGIGGGASPSFLQAAKLHHQRQLKLDSRLSNTPS
DSGASSAGDPNEDGVTSVLGGQIATPSSTNATSLPKLDLRHPNFPATSEP
DADMQRQRHQELLEIFRSHSEPLYSSFAPFSHLPPVLLAAGVPQLPIFKD
QFKAELLFPTTSSPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAAS
HCLGESTNFVRKSTPLDLTLVRSQTLTG*

RT01112.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25170-PA 376 GF25170-PA 1..376 6..378 1547 84.7 Plus
Dana\GF24122-PA 674 GF24122-PA 10..100 6..96 493 86.8 Plus
Dana\GF24121-PA 446 GF24121-PA 6..100 6..100 467 82.1 Plus
Dana\GF24702-PA 505 GF24702-PA 127..236 5..103 234 44.6 Plus
Dana\GF12134-PA 448 GF12134-PA 51..127 10..87 227 46.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16225-PA 376 GG16225-PA 1..376 6..378 1872 95.2 Plus
Dere\GG13294-PA 643 GG13294-PA 10..100 6..96 491 86.8 Plus
Dere\GG13292-PA 433 GG13292-PA 6..125 6..123 467 71.7 Plus
Dere\GG14911-PA 497 GG14911-PA 122..231 5..103 231 43.8 Plus
Dere\GG25225-PA 702 GG25225-PA 266..342 10..87 229 46.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16373-PA 383 GH16373-PA 1..383 6..378 1116 64.5 Plus
Dgri\GH16982-PA 682 GH16982-PA 10..100 6..96 490 86.8 Plus
Dgri\GH16981-PA 509 GH16981-PA 6..128 6..128 487 69.9 Plus
Dgri\GH20117-PA 487 GH20117-PA 51..127 10..87 229 46.2 Plus
Dgri\GH15984-PA 491 GH15984-PA 113..192 5..85 229 51.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
eg-PA 373 CG7383-PA 1..373 6..378 1947 100 Plus
eg-PB 373 CG7383-PB 1..373 6..378 1947 100 Plus
eg-PC 355 CG7383-PC 8..355 31..378 1794 99.7 Plus
knrl-PB 647 CG4761-PB 10..134 6..119 516 74.4 Plus
knrl-PA 647 CG4761-PA 10..134 6..119 516 74.4 Plus
kni-PA 429 CG4717-PA 1..120 6..123 470 71.7 Plus
kni-PB 434 CG4717-PB 6..125 6..123 470 71.7 Plus
Eip75B-PG 991 CG8127-PG 36..133 9..106 231 43.9 Plus
Eip75B-PC 1199 CG8127-PC 244..341 9..106 231 43.9 Plus
Eip75B-PF 1412 CG8127-PF 457..554 9..106 231 43.9 Plus
Eip75B-PE 1412 CG8127-PE 457..554 9..106 231 43.9 Plus
Eip75B-PB 1412 CG8127-PB 457..554 9..106 231 43.9 Plus
usp-PB 508 CG4380-PB 103..217 9..120 228 38.8 Plus
usp-PA 508 CG4380-PA 103..217 9..120 228 38.8 Plus
ERR-PA 484 CG7404-PA 110..219 5..103 224 42.3 Plus
ERR-PB 496 CG7404-PB 122..231 5..103 224 42.3 Plus
Hr3-PD 456 CG33183-PD 22..98 10..87 218 46.2 Plus
Hr3-PF 487 CG33183-PF 51..127 10..87 218 46.2 Plus
Hr3-PA 487 CG33183-PA 51..127 10..87 218 46.2 Plus
Hr3-PH 529 CG33183-PH 51..127 10..87 218 46.2 Plus
Hr3-PC 694 CG33183-PC 260..336 10..87 218 46.2 Plus
Hr3-PI 871 CG33183-PI 437..513 10..87 218 46.2 Plus
Eip78C-PE 862 CG18023-PE 363..573 10..222 213 28.4 Plus
Eip78C-PD 862 CG18023-PD 363..573 10..222 213 28.4 Plus
Eip78C-PA 862 CG18023-PA 363..573 10..222 213 28.4 Plus
Hr78-PF 601 CG7199-PF 50..280 8..252 206 27.3 Plus
Hr78-PE 601 CG7199-PE 50..280 8..252 206 27.3 Plus
Hr78-PB 601 CG7199-PB 50..280 8..252 206 27.3 Plus
Hr78-PD 601 CG7199-PD 50..280 8..252 206 27.3 Plus
Hr78-PC 601 CG7199-PC 50..280 8..252 206 27.3 Plus
Hr78-PA 599 CG7199-PA 50..278 8..252 194 27.3 Plus
svp-PB 543 CG11502-PB 200..300 10..120 188 34.2 Plus
svp-PE 554 CG11502-PE 200..300 10..120 188 34.2 Plus
svp-PA 746 CG11502-PA 200..300 10..120 188 34.2 Plus
EcR-PC 669 CG1765-PC 53..166 8..116 184 36.5 Plus
EcR-PE 849 CG1765-PE 233..346 8..116 184 36.5 Plus
EcR-PD 849 CG1765-PD 233..346 8..116 184 36.5 Plus
EcR-PA 849 CG1765-PA 233..346 8..116 184 36.5 Plus
EcR-PG 878 CG1765-PG 262..375 8..116 184 36.5 Plus
EcR-PB 878 CG1765-PB 262..375 8..116 184 36.5 Plus
Hr38-PD 836 CG1864-PD 504..586 7..86 183 45.2 Plus
Hr38-PB 1078 CG1864-PB 746..828 7..86 183 45.2 Plus
Hr39-PC 701 CG8676-PC 372..603 6..231 180 26.9 Plus
Hr39-PD 808 CG8676-PD 372..603 6..231 180 26.9 Plus
Hr39-PA 808 CG8676-PA 372..603 6..231 180 26.9 Plus
Hr39-PB 808 CG8676-PB 372..603 6..231 180 26.9 Plus
ftz-f1-PC 803 CG4059-PC 282..358 8..85 178 43.6 Plus
ftz-f1-PA 803 CG4059-PA 282..358 8..85 178 43.6 Plus
ftz-f1-PD 853 CG4059-PD 282..358 8..85 178 43.6 Plus
ftz-f1-PB 1027 CG4059-PB 506..582 8..85 178 43.6 Plus
tll-PA 452 CG1378-PA 34..110 10..85 175 40.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11566-PA 377 GI11566-PA 1..377 6..378 1221 67.3 Plus
Dmoj\GI11900-PA 671 GI11900-PA 10..100 6..96 489 86.8 Plus
Dmoj\GI11896-PA 469 GI11896-PA 1..123 6..128 468 69.1 Plus
Dmoj\GI16634-PA 491 GI16634-PA 109..188 5..85 230 51.2 Plus
Dmoj\GI20211-PA 487 GI20211-PA 51..127 10..87 229 46.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24862-PA 390 GL24862-PA 1..390 6..378 1397 78.1 Plus
Dper\GL12762-PA 455 GL12762-PA 1..115 6..124 472 71.4 Plus
Dper\GL12764-PA 707 GL12764-PA 30..103 6..96 374 72.5 Plus
Dper\GL22565-PA 490 GL22565-PA 107..186 5..85 231 51.2 Plus
Dper\GL10487-PA 487 GL10487-PA 51..127 10..87 229 46.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20312-PA 390 GA20312-PA 1..390 6..378 1398 78.1 Plus
Dpse\GA18413-PA 705 GA18413-PA 10..100 6..96 485 86.8 Plus
Dpse\GA18381-PA 493 GA18381-PA 6..120 6..124 473 71.4 Plus
Dpse\GA20327-PA 491 GA20327-PA 107..186 5..85 231 51.2 Plus
Dpse\GA17350-PA 487 GA17350-PA 51..127 10..87 229 46.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22199-PA 643 GM22199-PA 10..100 6..96 492 86.8 Plus
Dsec\kni-PA 431 GM22197-PA 5..124 6..123 467 72.5 Plus
Dsec\GM24962-PA 495 GM24962-PA 120..229 5..103 231 43.8 Plus
Dsec\GM22351-PA 986 GM22351-PA 493..567 10..85 215 46.1 Plus
Dsec\GM18927-PA 505 GM18927-PA 100..176 9..86 200 42.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15001-PA 388 GD15001-PA 7..388 4..378 1919 95.8 Plus
Dsim\GD12173-PA 599 GD12173-PA 10..100 6..96 492 86.8 Plus
Dsim\kni-PA 378 GD12172-PA 1..95 6..100 464 82.1 Plus
Dsim\GD12358-PA 433 GD12358-PA 244..341 9..106 243 43.9 Plus
Dsim\GD26001-PA 627 GD26001-PA 436..512 10..87 229 46.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11245-PA 367 GJ11245-PA 1..367 6..378 1218 67.7 Plus
Dvir\GJ13774-PA 654 GJ13774-PA 10..138 6..121 501 67.4 Plus
Dvir\kni-PA 486 GJ13773-PA 6..128 6..128 481 69.1 Plus
Dvir\GJ12889-PA 503 GJ12889-PA 120..199 5..85 232 52.4 Plus
Dvir\GJ20161-PA 487 GJ20161-PA 51..127 10..87 229 46.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17344-PA 377 GK17344-PA 1..374 6..370 1165 66 Plus
Dwil\GK10566-PA 666 GK10566-PA 10..100 6..96 489 86.8 Plus
Dwil\GK10545-PA 458 GK10545-PA 6..125 6..118 466 71.7 Plus
Dwil\GK20573-PA 930 GK20573-PA 337..434 9..106 244 43.9 Plus
Dwil\GK10827-PA 501 GK10827-PA 124..203 5..85 231 51.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23274-PA 461 GE23274-PA 86..461 6..378 1746 94.7 Plus
Dyak\GE19793-PA 449 GE19793-PA 74..449 6..378 1746 94.7 Plus
Dyak\GE22392-PA 657 GE22392-PA 10..100 6..96 481 86.8 Plus
Dyak\GE22389-PA 433 GE22389-PA 6..125 6..123 467 71.7 Plus
Dyak\GE20365-PA 497 GE20365-PA 122..231 5..103 231 43.8 Plus

RT01112.hyp Sequence

Translation from 17 to 1137

> RT01112.hyp
MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHNGDCVI
NKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSGL
GGGSSVGSGSGGGVSSASLEQLARLQQASNQARQTYQDKTNPCIKSATAT
TSPRIEGAAVGTGIGGGASPSFLQAAKLHHQRQLKLDSRLSNTPSDSGAS
SAGDPNEDGVTSVLGGQIATPSSTNATSLPKLDLRHPNFPATSEPDADMQ
RQRHQELLEIFRSHSEPLYSSFAPFSHLPPVLLAAGVPQLPIFKDQFKAE
LLFPTTSSPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAASHCLGE
STNFVRKSTPLDLTLVRSQTLTG*

RT01112.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
eg-PA 373 CG7383-PA 1..373 1..373 1947 100 Plus
eg-PB 373 CG7383-PB 1..373 1..373 1947 100 Plus
eg-PC 355 CG7383-PC 8..355 26..373 1794 99.7 Plus
knrl-PB 647 CG4761-PB 10..134 1..114 516 74.4 Plus
knrl-PA 647 CG4761-PA 10..134 1..114 516 74.4 Plus