Clone RT01114 Report

Search the DGRC for RT01114

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:14
Vector:pCR2.1
Associated Gene/Transcriptzen-RA
Protein status:RT01114.pep: gold
Sequenced Size:1094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1046 2006-05-19 RT target
zen 2008-04-29 Release 5.5 accounting
zen 2008-08-15 Release 5.9 accounting
zen 2008-12-18 5.12 accounting

Clone Sequence Records

RT01114.complete Sequence

1094 bp (1094 high quality bases) assembled on 2008-07-28

GenBank Submission: BT028847

> RT01114.complete
GAAGTTATCAGTCGACATGTCATCCGTCATGCACTACTATCCAGTTCACC
AGGCTAAAGTCGGCTCCTATTCAGCAGATCCTTCCGAGGTTAAATACAGT
GATTTGATCTATGGTCATCATCACGATGTTAACCCCATCGGTCTGCCTCC
CAACTACAACCAGATGAACTCCAACCCCACCACCCTCAACGATCACTGCT
CCCCGCAGCATGTGCATCAGCAGCATGTGTCATCGGACGAGAATCTGCCA
TCTCAGCCCAACCACGACTCGCAGAGGGTGAAGCTTAAGCGATCACGGAC
TGCCTTCACCAGTGTCCAACTGGTGGAACTTGAGAACGAGTTCAAGAGCA
ACATGTACTTGTACAGGACGCGCAGGATTGAGATTGCTCAGCGCTTGTCC
CTGTGCGAACGCCAGGTGAAGATCTGGTTCCAGAACCGACGAATGAAGTT
CAAGAAGGACATACAAGGTCACCGCGAGCCCAAGTCCAACGCCAAGTTGG
CTCAACCCCAGGCTGAGCAGAGTGCCCACCGAGGCATAGTGAAGCGCCTC
ATGTCCTACTCCCAGGATCCCAGGGAGGGCACAGCGGCAGCAGAAAAGCG
TCCTATGATGGCAGTGGCTCCTGTGAATCCAAAGCCAGACTATCAAGCCA
GCCAGAAAATGAAGACCGAAGCATCAACCAACAACGGCATGTGCTCCAGC
GCCGACCTCAGCGAGATCTTGGAGCATCTGGCTCAAACTACAGCTGCACC
ACAGGTCAGCACTGCCACATCTAGCACAGGAACATCTACCAACTCGGCTT
CTAGCTCCTCTTCGGGCCACTATTCCTACAACGTGGATTTGGTTCTGCAG
AGCATCAAGCAGGATTTGGAGGCAGCGGCCCAGGCTTGGTCCAAGTCTAA
ATCCGCGCCTATCCTGGCCACTCAATCCTGGCATCCCAGTTCCCAAAGTC
AGGTCCCCACGAGCGTGCATGCGGCTCCCTCGATGAATCTGTCGTGGGGC
GAGCCTGCTGCCAAGTCGAGAAAGCTGAGCGTTAATCACATGAACCCGTG
CGTAACCTCCTACAATTATCCCAACTAAAAGCTTTATCGACCAT

RT01114.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
zen-RA 1576 zen-RA 253..1314 17..1078 5295 99.9 Plus
zen.a 1911 zen.a 588..1649 17..1078 5295 99.9 Plus
zen-RB 1236 zen-RB 16..1077 17..1078 5295 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2578803..2579777 1078..104 4875 100 Minus
chr3R 27901430 chr3R 2579838..2579928 107..17 440 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:40:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6753023..6753997 1078..104 4860 99.9 Minus
3R 32079331 3R 6754058..6754148 107..17 440 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6493854..6494828 1078..104 4860 99.8 Minus
3R 31820162 3R 6494889..6494979 107..17 440 98.9 Minus
Blast to na_te.dros performed on 2019-03-16 20:53:48 has no hits.

RT01114.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:54:34 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2578799..2579777 104..1085 99 <- Minus
chr3R 2579842..2579928 17..103 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:26 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 1..1062 17..1078 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:03:53 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 1..1062 17..1078 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:25 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RA 1..1062 17..1078 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:46:57 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 1..1062 17..1078 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:40 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RA 1..1062 17..1078 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:24:00 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 16..1080 17..1085 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:03:53 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 16..1080 17..1085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:25 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RA 47..1111 17..1085 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:46:57 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RB 16..1080 17..1085 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:40 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
zen-RA 47..1111 17..1085 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:34 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6753019..6753997 104..1085 99 <- Minus
3R 6754062..6754148 17..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:34 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6753019..6753997 104..1085 99 <- Minus
3R 6754062..6754148 17..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:34 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6753019..6753997 104..1085 99 <- Minus
3R 6754062..6754148 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:25 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2578741..2579719 104..1085 99 <- Minus
arm_3R 2579784..2579870 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:32:05 Download gff for RT01114.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6493850..6494828 104..1085 99 <- Minus
3R 6494893..6494979 17..103 100   Minus

RT01114.pep Sequence

Translation from 1 to 1077

> RT01114.pep
KLSVDMSSVMHYYPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPP
NYNQMNSNPTTLNDHCSPQHVHQQHVSSDENLPSQPNHDSQRVKLKRSRT
AFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMKF
KKDIQGHREPKSNAKLAQPQAEQSAHRGIVKRLMSYSQDPREGTAAAEKR
PMMAVAPVNPKPDYQASQKMKTEASTNNGMCSSADLSEILEHLAQTTAAP
QVSTATSSTGTSTNSASSSSSGHYSYNVDLVLQSIKQDLEAAAQAWSKSK
SAPILATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPC
VTSYNYPN*

RT01114.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17795-PA 356 GF17795-PA 1..356 6..358 1258 73 Plus
Dana\GF17797-PA 262 GF17797-PA 30..155 80..203 245 49.6 Plus
Dana\GF23802-PA 532 GF23802-PA 449..520 94..165 225 58.3 Plus
Dana\GF17792-PA 582 GF17792-PA 352..425 75..153 224 57 Plus
Dana\GF10750-PA 307 GF10750-PA 218..283 96..163 222 66.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10235-PA 353 GG10235-PA 1..353 6..358 1681 89 Plus
Dere\GG10258-PA 252 GG10258-PA 42..163 94..210 237 47.5 Plus
Dere\GG14457-PA 524 GG14457-PA 440..516 94..170 225 57.1 Plus
Dere\GG13676-PA 579 GG13676-PA 351..424 75..153 224 57 Plus
Dere\GG13695-PA 319 GG13695-PA 227..292 96..163 220 66.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19481-PA 346 GH19481-PA 1..346 6..358 913 58.3 Plus
Dgri\GH18130-PA 314 GH18130-PA 33..176 90..212 241 45.9 Plus
Dgri\GH19479-PA 599 GH19479-PA 347..420 75..153 223 57 Plus
Dgri\GH16676-PA 316 GH16676-PA 228..293 96..163 218 66.2 Plus
Dgri\GH19475-PA 385 GH19475-PA 301..374 92..165 216 54.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
zen-PA 353 CG1046-PA 1..353 6..358 1847 100 Plus
zen2-PB 232 CG1048-PB 10..80 80..152 230 67.1 Plus
zen2-PA 252 CG1048-PA 30..100 80..152 230 67.1 Plus
exex-PA 525 CG8254-PA 438..517 94..173 222 56.2 Plus
ind-PB 320 CG11551-PB 164..293 21..163 216 40.6 Plus
Dfd-PA 586 CG2189-PA 351..536 75..277 215 30.6 Plus
Ubx-PF 355 CG10388-PF 232..341 65..175 213 42.3 Plus
Antp-PK 361 CG1028-PK 217..350 36..165 212 37.3 Plus
Antp-PG 361 CG1028-PG 217..350 36..165 212 37.3 Plus
Antp-PN 374 CG1028-PN 230..363 36..165 212 37.3 Plus
Antp-PD 374 CG1028-PD 230..363 36..165 212 37.3 Plus
Ubx-PB 346 CG10388-PB 253..332 96..175 207 53.8 Plus
Ubx-PD 363 CG10388-PD 270..349 96..175 207 53.8 Plus
Antp-PF 365 CG1028-PF 217..354 36..165 207 36.3 Plus
Antp-PE 365 CG1028-PE 217..354 36..165 207 36.3 Plus
Ubx-PC 372 CG10388-PC 279..358 96..175 207 53.8 Plus
Antp-PJ 378 CG1028-PJ 230..367 36..165 207 36.3 Plus
Antp-PI 378 CG1028-PI 230..367 36..165 207 36.3 Plus
Antp-PL 378 CG1028-PL 230..367 36..165 207 36.3 Plus
Antp-PM 378 CG1028-PM 230..367 36..165 207 36.3 Plus
Ubx-PE 380 CG10388-PE 287..366 96..175 207 53.8 Plus
Ubx-PA 389 CG10388-PA 296..375 96..175 207 53.8 Plus
pb-PD 772 CG31481-PD 177..356 84..280 204 30.5 Plus
pb-PC 777 CG31481-PC 194..361 96..280 200 31.4 Plus
pb-PB 777 CG31481-PB 194..361 96..280 200 31.4 Plus
pb-PA 782 CG31481-PA 199..366 96..280 200 31.4 Plus
abd-A-PD 330 CG10325-PD 139..231 96..188 194 44.1 Plus
abd-A-PC 330 CG10325-PC 139..231 96..188 194 44.1 Plus
abd-A-PA 330 CG10325-PA 139..231 96..188 194 44.1 Plus
abd-A-PB 590 CG10325-PB 399..491 96..188 194 44.1 Plus
Scr-PB 417 CG1030-PB 325..382 96..153 192 65.5 Plus
Scr-PA 417 CG1030-PA 325..382 96..153 192 65.5 Plus
ftz-PA 410 CG2047-PA 255..312 96..153 187 63.8 Plus
btn-PA 158 CG5264-PA 29..155 32..165 185 38.1 Plus
unpg-PA 485 CG1650-PA 258..376 42..152 184 41.3 Plus
lab-PB 213 CG1264-PB 89..145 99..155 178 66.7 Plus
lab-PA 629 CG1264-PA 505..561 99..155 178 66.7 Plus
cad-PB 427 CG1759-PB 203..338 39..160 177 35 Plus
cad-PA 427 CG1759-PA 203..338 39..160 177 35 Plus
slou-PA 659 CG6534-PA 544..606 94..156 174 58.7 Plus
slou-PB 698 CG6534-PB 544..606 94..156 174 58.7 Plus
eve-PA 376 CG2328-PA 15..127 40..152 173 35.5 Plus
Abd-B-PJ 270 CG11648-PJ 148..252 83..178 172 40 Plus
Abd-B-PI 270 CG11648-PI 148..252 83..178 172 40 Plus
Abd-B-PE 270 CG11648-PE 148..252 83..178 172 40 Plus
Abd-B-PD 270 CG11648-PD 148..252 83..178 172 40 Plus
Abd-B-PA 270 CG11648-PA 148..252 83..178 172 40 Plus
Abd-B-PC 270 CG11648-PC 148..252 83..178 172 40 Plus
Abd-B-PG 286 CG11648-PG 148..252 83..178 172 40 Plus
Abd-B-PF 323 CG11648-PF 148..252 83..178 172 40 Plus
Abd-B-PH 493 CG11648-PH 371..475 83..178 172 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24719-PA 336 GI24719-PA 1..336 6..358 964 61 Plus
Dmoj\GI14280-PA 154 GI14280-PA 1..152 184..354 332 52.2 Plus
Dmoj\GI22889-PA 234 GI22889-PA 34..234 94..288 271 39.4 Plus
Dmoj\GI13996-PA 278 GI13996-PA 22..209 94..271 260 41.8 Plus
Dmoj\GI11362-PA 317 GI11362-PA 202..313 66..175 225 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22044-PA 378 GL22044-PA 1..378 6..358 1079 63.4 Plus
Dper\GL21773-PA 270 GL21773-PA 42..138 94..186 246 57.1 Plus
Dper\GL22036-PA 395 GL22036-PA 256..384 42..165 237 40.9 Plus
Dper\GL22041-PA 602 GL22041-PA 357..430 75..153 224 57 Plus
Dper\GL25910-PA 316 GL25910-PA 226..291 96..163 220 66.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\zen-PB 357 GA10326-PB 1..357 6..358 1114 66 Plus
Dpse\GA10340-PA 270 GA10340-PA 42..138 94..186 245 57.1 Plus
Dpse\Antp-PA 392 GA10215-PA 253..381 42..165 237 40.9 Plus
Dpse\GA20934-PA 575 GA20934-PA 484..555 94..165 225 58.3 Plus
Dpse\GA23649-PA 315 GA23649-PA 225..290 96..163 221 66.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10527-PA 351 GM10527-PA 1..351 6..358 1742 93.5 Plus
Dsec\GM10529-PA 252 GM10529-PA 42..139 94..187 237 55.1 Plus
Dsec\GM25007-PA 523 GM25007-PA 438..509 94..165 227 58.3 Plus
Dsec\GM24515-PA 308 GM24515-PA 216..272 96..152 220 73.7 Plus
Dsec\GM10522-PA 374 GM10522-PA 230..363 36..165 219 39.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19522-PA 351 GD19522-PA 1..351 6..358 1755 94.1 Plus
Dsim\GD19524-PA 252 GD19524-PA 42..139 94..187 231 54.1 Plus
Dsim\GD19895-PA 582 GD19895-PA 351..424 75..153 223 57 Plus
Dsim\GD12586-PA 319 GD12586-PA 227..292 96..163 220 66.2 Plus
Dsim\GD14043-PA 321 GD14043-PA 235..306 94..165 218 58.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\zen-PA 340 GJ23935-PA 1..340 6..358 951 58.8 Plus
Dvir\GJ23303-PA 322 GJ23303-PA 46..144 94..186 244 56.3 Plus
Dvir\GJ13893-PA 557 GJ13893-PA 468..539 94..165 223 58.3 Plus
Dvir\GJ11617-PA 317 GJ11617-PA 228..293 96..163 221 66.2 Plus
Dvir\GJ23932-PA 253 GJ23932-PA 23..97 74..153 218 56.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10829-PA 351 GK10829-PA 1..351 6..358 816 58.8 Plus
Dwil\GK12250-PA 233 GK12250-PA 39..148 94..199 230 49.5 Plus
Dwil\GK12253-PA 599 GK12253-PA 360..433 75..153 225 57 Plus
Dwil\GK20585-PA 578 GK20585-PA 485..556 94..165 223 58.3 Plus
Dwil\GK17410-PA 307 GK17410-PA 216..281 96..163 221 66.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25830-PA 355 GE25830-PA 1..355 6..358 1686 89.9 Plus
Dyak\GE25832-PA 252 GE25832-PA 42..100 94..152 234 78 Plus
Dyak\GE21647-PA 532 GE21647-PA 446..517 94..165 227 58.3 Plus
Dyak\GE24883-PA 588 GE24883-PA 356..429 75..153 223 57 Plus
Dyak\GE19990-PA 324 GE19990-PA 232..297 96..163 221 66.2 Plus

RT01114.hyp Sequence

Translation from 17 to 1077

> RT01114.hyp
MSSVMHYYPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPPNYNQM
NSNPTTLNDHCSPQHVHQQHVSSDENLPSQPNHDSQRVKLKRSRTAFTSV
QLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMKFKKDIQ
GHREPKSNAKLAQPQAEQSAHRGIVKRLMSYSQDPREGTAAAEKRPMMAV
APVNPKPDYQASQKMKTEASTNNGMCSSADLSEILEHLAQTTAAPQVSTA
TSSTGTSTNSASSSSSGHYSYNVDLVLQSIKQDLEAAAQAWSKSKSAPIL
ATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPCVTSYN
YPN*

RT01114.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
zen-PA 353 CG1046-PA 1..353 1..353 1847 100 Plus
zen2-PB 232 CG1048-PB 10..80 75..147 230 67.1 Plus
zen2-PA 252 CG1048-PA 30..100 75..147 230 67.1 Plus
exex-PA 525 CG8254-PA 438..517 89..168 222 56.2 Plus
ind-PB 320 CG11551-PB 164..293 16..158 216 40.6 Plus