Clone RT01136 Report

Search the DGRC for RT01136

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:36
Vector:pCR2.1
Associated Gene/TranscriptSox100B-RA
Protein status:RT01136.pep: gold
Sequenced Size:1622

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15552 2006-05-19 RT target
Sox100B 2008-08-15 Release 5.9 accounting
Sox100B 2008-12-18 5.12 accounting

Clone Sequence Records

RT01136.complete Sequence

1622 bp assembled on 2008-11-04

GenBank Submission: BT030311.2

> RT01136.complete
GAAGTTATCAGTCGACATGAGTGACAGTTCCAGCTCCAATTGCTCGAAGG
ATCGTGCTAAGCCGGTGGAAACGCTGGTTTTGGCAAACTATGCCCTGAAA
GCCGAGCAGAAGAAGGCCCAAGGACAGGGTGGTCGAAAGGAGGACGAGCG
CATCACCACTGCGGTTATGAAGGTCCTCGAGGGCTACGACTGGAATCTAG
TCCAGGCATCAGCCAAGGCGCCCACGGACCGCAAAAAGGAGCACATCAAG
CGACCGATGAACGCCTTCATGGTTTGGGCCCAGGCAGCCCGCAGGGTCAT
GTCCAAACAGTATCCGCATCTGCAGAACTCCGAACTGAGCAAATCGCTGG
GCAAGCTGTGGAAAAATCTAAAGGACAGTGATAAGAAGCCCTTCATGGAA
TTCGCCGAGAAGCTTCGAATGACCCACAAGCAGGAGCATCCGGACTACAA
GTACCAGCCGCGGCGCAAGAAAGCGCGGGTGTTGCCGTCCCAGCAAAGCG
GTGAAGGGGGATCCCCGGGTCCAGAGATGACGTTATCCGCCACTATGGGT
AGCTCCGGGAAGCCAAGGAGCAGCAATTCCAATGGCCAGAGGCGAGCGGG
CAAGGGAAATGCAGCTGCTGATCTGGGCAGCTGCGCCTCGACCATCTCCC
ATGCCAATGTGGGCTCGAACTCCTCGGATGTCTTCAGTAATGAGGCCTTC
ATGAAATCCCTGAACAGTGCCTGTGCGGCCAGTTTGATGGAGCAGAGCCT
CATCGAAACTGGCCTGGACTCTCCGTGCTCCACGGCCAGTTCAATGTCCT
CGCTGACGCCCCCAGCCACGCCCTACAATGTAGCCCCATCCAATGCAAAA
GCGTCGGCAGCAAATAACCCCAGTCTTTTGCTAAGGCAACTAAGTGAGCC
AGTTGCAAATGCAGGCGATGGTTATGGAGTTCTCCTCGAGGCAGGCAGAG
AATATGTGGCCATAGGTGAGGTCAATTATCAGGGGCAATCGGCGGGAGTT
CAGAGTGGAGCCGAAGGAGGAGGAGCAGGTCAGGAGATGGACTTCCTGGA
GAACATCAATGGGTATGGTGGCTACACGGGCAGTCGGGTGAGCTACCCTG
CCTACTCCTACCCCGCAAACGGAGGCCACTTCGCCACCGAGGAGCAGCAG
CAGCAGCAGGCGTTACAGGCCAGTGAAGCCTTAAATTACAAGCCAGCAGC
CGCCGACATCGATCCCAAGGAAATTGACCAGTATTTCATGGATCAAATGC
TGCCCATGACGCAGCACCACCATCCGCATCACACCCACCCGCTGCACCAC
CCACTGCACCACTCGCCGCCTTTGAACTCCTCCGCCTCGCTATCCTCGGC
CTGCTCCAGTGCCAGCTCGCAGCAGCCGGTAGCGGAGTACTACGAGCACT
TGGGCTACTCCCCGGCCGCCTCCTCTGCCAGCCAGAATCCCAACTTCGGG
CCCCAGCAACCGTATGCCAACGGGGCGGCCTCCATGACACCCACACTGGG
TGACCCCGCACCGCAACAGGAGCTGCAGTCGCAGCAGCAGGAGCAGCAGC
ACCAGAATCCATCGCAGCATCATCTGTGGGGCACTTACACTTATGTCAAT
CCCTAAAAGCTTTATCGACCAT

RT01136.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sox100B.a 2537 Sox100B.a 187..1776 17..1606 7950 100 Plus
Sox100B-RA 2049 Sox100B-RA 187..1776 17..1606 7950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26904284..26905529 364..1606 5985 98.9 Plus
chr3R 27901430 chr3R 26887807..26888007 17..217 1005 100 Plus
chr3R 27901430 chr3R 26895609..26895759 213..363 725 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:41:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31081892..31083134 364..1606 6215 100 Plus
3R 32079331 3R 31065439..31065639 17..217 1005 100 Plus
3R 32079331 3R 31073212..31073362 213..363 740 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30822723..30823965 364..1606 6215 100 Plus
3R 31820162 3R 30806270..30806470 17..217 1005 100 Plus
3R 31820162 3R 30814043..30814193 213..363 740 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 09:55:08 has no hits.

RT01136.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:55:59 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26887807..26888006 17..216 100 -> Plus
chr3R 26895613..26895759 217..363 99 -> Plus
chr3R 26904284..26905532 364..1611 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:53:13 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 1..1590 17..1606 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:18:11 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 1..1590 17..1606 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:30 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 1..1590 17..1606 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:40 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 1..1590 17..1606 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:48:53 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 1..1590 17..1606 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:12 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 83..1675 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:18:11 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 83..1675 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:30 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 187..1779 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:40 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 83..1675 17..1611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:48:53 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
Sox100B-RA 187..1779 17..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:59 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31073216..31073362 217..363 100 -> Plus
3R 31065439..31065638 17..216 100 -> Plus
3R 31081892..31083137 364..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:59 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31073216..31073362 217..363 100 -> Plus
3R 31065439..31065638 17..216 100 -> Plus
3R 31081892..31083137 364..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:55:59 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31073216..31073362 217..363 100 -> Plus
3R 31065439..31065638 17..216 100 -> Plus
3R 31081892..31083137 364..1611 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:30 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26891161..26891360 17..216 100 -> Plus
arm_3R 26898938..26899084 217..363 100 -> Plus
arm_3R 26907614..26908859 364..1611 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:49:23 Download gff for RT01136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30822723..30823968 364..1611 99   Plus
3R 30806270..30806469 17..216 100 -> Plus
3R 30814047..30814193 217..363 100 -> Plus

RT01136.pep Sequence

Translation from 1 to 1605

> RT01136.pep
KLSVDMSDSSSSNCSKDRAKPVETLVLANYALKAEQKKAQGQGGRKEDER
ITTAVMKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVM
SKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYK
YQPRRKKARVLPSQQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAG
KGNAAADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQSL
IETGLDSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEP
VANAGDGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLE
NINGYGGYTGSRVSYPAYSYPANGGHFATEEQQQQQALQASEALNYKPAA
ADIDPKEIDQYFMDQMLPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSA
CSSASSQQPVAEYYEHLGYSPAASSASQNPNFGPQQPYANGAASMTPTLG
DPAPQQELQSQQQEQQHQNPSQHHLWGTYTYVNP*

RT01136.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18413-PA 541 GF18413-PA 1..541 6..534 1396 67.7 Plus
Dana\GF12898-PA 784 GF12898-PA 216..426 78..300 280 31.9 Plus
Dana\GF15546-PA 652 GF15546-PA 176..301 80..195 270 43 Plus
Dana\GF25204-PA 387 GF25204-PA 145..220 81..156 264 59.2 Plus
Dana\GF25206-PA 355 GF25206-PA 119..195 80..156 259 57.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11790-PA 542 GG11790-PA 1..542 6..534 1939 85.7 Plus
Dere\GG25303-PA 534 GG25303-PA 179..305 80..195 283 43.8 Plus
Dere\GG22439-PA 789 GG22439-PA 211..300 78..167 272 50 Plus
Dere\GG13733-PA 382 GG13733-PA 141..216 81..156 266 59.2 Plus
Dere\GG22917-PA 668 GG22917-PA 156..269 59..159 266 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13971-PA 586 GH13971-PA 2..152 11..161 773 92.7 Plus
Dgri\GH20045-PA 817 GH20045-PA 219..328 78..187 284 45.5 Plus
Dgri\GH16344-PA 413 GH16344-PA 161..236 81..156 267 59.2 Plus
Dgri\GH16347-PA 377 GH16347-PA 97..173 80..156 262 58.4 Plus
Dgri\GH13864-PA 602 GH13864-PA 194..269 80..155 259 53.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sox100B-PA 529 CG15552-PA 1..529 6..534 2776 100 Plus
SoxN-PB 761 CG18024-PB 110..615 3..519 356 25.6 Plus
SoxN-PA 572 CG18024-PA 110..314 3..206 310 34.3 Plus
Sox15-PA 784 CG8404-PA 211..418 78..300 273 31.3 Plus
Sox21a-PA 388 CG7345-PA 119..212 80..173 267 52.1 Plus
Sox21a-PB 407 CG7345-PB 119..212 80..173 267 52.1 Plus
D-PD 382 CG5893-PD 133..251 73..200 263 42.2 Plus
D-PC 382 CG5893-PC 133..251 73..200 263 42.2 Plus
D-PB 382 CG5893-PB 133..251 73..200 263 42.2 Plus
D-PA 382 CG5893-PA 133..251 73..200 263 42.2 Plus
Sox14-PC 669 CG3090-PC 151..342 59..240 260 33.8 Plus
Sox14-PB 669 CG3090-PB 151..342 59..240 260 33.8 Plus
Sox14-PA 669 CG3090-PA 151..342 59..240 260 33.8 Plus
Sox21b-PB 571 CG32139-PB 243..322 77..156 255 55 Plus
Sox21b-PA 571 CG32139-PA 243..322 77..156 255 55 Plus
Sox21b-PC 587 CG32139-PC 243..322 77..156 255 55 Plus
Sox102F-PD 580 CG11153-PD 382..468 79..165 230 46 Plus
Sox102F-PC 580 CG11153-PC 382..468 79..165 230 46 Plus
Sox102F-PA 580 CG11153-PA 382..468 79..165 230 46 Plus
Sox102F-PB 618 CG11153-PB 420..506 79..165 230 46 Plus
pan-PH 747 CG34403-PH 261..488 70..289 167 24.8 Plus
cic-PH 1275 CG43122-PH 329..472 70..208 159 29.3 Plus
cic-PA 1403 CG5067-PA 481..624 70..208 159 29.3 Plus
cic-PC 1427 CG43122-PC 481..624 70..208 159 29.3 Plus
cic-PB 1832 CG5067-PB 481..624 70..208 159 29.3 Plus
cic-PD 2141 CG43122-PD 1219..1362 70..208 159 29.3 Plus
cic-PG 2150 CG43122-PG 1223..1366 70..208 159 29.3 Plus
pan-PS 733 CG34403-PS 261..492 70..289 157 25.1 Plus
pan-PR 751 CG34403-PR 261..492 70..289 157 25.1 Plus
pan-PA 751 CG34403-PA 261..492 70..289 157 25.1 Plus
pan-PB 751 CG34403-PB 261..492 70..289 157 25.1 Plus
pan-PD 751 CG34403-PD 261..492 70..289 157 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22315-PA 536 GI22315-PA 2..536 11..534 1253 58.2 Plus
Dmoj\GI20453-PA 825 GI20453-PA 205..295 78..168 272 49.5 Plus
Dmoj\GI11536-PA 413 GI11536-PA 159..245 81..167 267 55.2 Plus
Dmoj\GI11537-PA 614 GI11537-PA 271..348 79..156 263 56.4 Plus
Dmoj\GI11538-PA 379 GI11538-PA 99..175 80..156 262 58.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13537-PA 565 GL13537-PA 1..565 6..534 1294 61.3 Plus
Dper\GL17288-PA 786 GL17288-PA 212..301 78..167 273 51.1 Plus
Dper\GL11646-PA 648 GL11646-PA 123..297 63..224 269 35.9 Plus
Dper\GL24831-PA 403 GL24831-PA 149..224 81..156 265 59.2 Plus
Dper\GL25564-PA 565 GL25564-PA 179..254 80..155 260 53.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13810-PA 570 GA13810-PA 1..570 6..534 1288 61.4 Plus
Dpse\GA21052-PA 786 GA21052-PA 212..301 78..167 273 51.1 Plus
Dpse\GA15918-PA 545 GA15918-PA 20..194 63..224 269 35.9 Plus
Dpse\GA19209-PA 395 GA19209-PA 149..224 81..156 265 59.2 Plus
Dpse\GA23525-PA 590 GA23525-PA 250..327 79..156 264 56.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12920-PA 532 GM12920-PA 1..532 6..534 2244 93.4 Plus
Dsec\GM17140-PA 573 GM17140-PA 178..304 80..195 283 43.8 Plus
Dsec\GM20225-PA 784 GM20225-PA 211..300 78..167 272 50 Plus
Dsec\GM24555-PA 382 GM24555-PA 141..216 81..156 266 59.2 Plus
Dsec\GM24557-PA 386 GM24557-PA 119..195 80..156 262 57.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21559-PA 531 GD21559-PA 1..531 6..534 2205 93.4 Plus
Dsim\GD23563-PA 489 GD23563-PA 96..222 80..195 283 43.8 Plus
Dsim\GD12627-PA 382 GD12627-PA 141..216 81..156 266 59.2 Plus
Dsim\GD12629-PA 573 GD12629-PA 245..322 79..156 264 56.4 Plus
Dsim\GD12630-PA 385 GD12630-PA 119..195 80..156 262 57.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10502-PA 549 GJ10502-PA 2..510 11..487 1199 59.5 Plus
Dvir\GJ22304-PA 802 GJ22304-PA 207..297 78..168 273 49.5 Plus
Dvir\GJ11556-PA 627 GJ11556-PA 277..364 66..156 268 50.5 Plus
Dvir\GJ11555-PA 414 GJ11555-PA 160..235 81..156 267 59.2 Plus
Dvir\GJ11557-PA 376 GJ11557-PA 93..169 80..156 263 58.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22609-PA 572 GK22609-PA 2..572 9..534 1124 50.3 Plus
Dwil\GK21748-PA 784 GK21748-PA 220..307 78..165 268 50 Plus
Dwil\GK17143-PA 420 GK17143-PA 176..264 81..170 267 54.4 Plus
Dwil\GK17144-PA 618 GK17144-PA 286..363 79..156 265 56.4 Plus
Dwil\GK17145-PA 428 GK17145-PA 139..215 80..156 264 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10918-PA 545 GE10918-PA 1..545 6..534 1993 85.5 Plus
Dyak\GE18794-PA 579 GE18794-PA 180..306 80..195 283 43.8 Plus
Dyak\GE12330-PA 791 GE12330-PA 211..300 78..167 272 50 Plus
Dyak\GE20027-PA 381 GE20027-PA 141..216 81..156 266 59.2 Plus
Dyak\GE20029-PA 397 GE20029-PA 127..203 80..156 261 57.1 Plus

RT01136.hyp Sequence

Translation from 17 to 1605

> RT01136.hyp
MSDSSSSNCSKDRAKPVETLVLANYALKAEQKKAQGQGGRKEDERITTAV
MKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVMSKQYP
HLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRR
KKARVLPSQQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAA
ADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQSLIETGL
DSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEPVANAG
DGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLENINGY
GGYTGSRVSYPAYSYPANGGHFATEEQQQQQALQASEALNYKPAAADIDP
KEIDQYFMDQMLPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSAS
SQQPVAEYYEHLGYSPAASSASQNPNFGPQQPYANGAASMTPTLGDPAPQ
QELQSQQQEQQHQNPSQHHLWGTYTYVNP*

RT01136.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sox100B-PA 529 CG15552-PA 1..529 1..529 2776 100 Plus
SoxN-PB 761 CG18024-PB 132..615 30..514 355 25.8 Plus
SoxN-PA 572 CG18024-PA 132..314 30..201 309 36.4 Plus
Sox21a-PA 388 CG7345-PA 119..212 75..168 267 52.1 Plus
Sox21a-PB 407 CG7345-PB 119..212 75..168 267 52.1 Plus