BDGP Sequence Production Resources |
Search the DGRC for RT01149
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 11 |
Well: | 49 |
Vector: | pCR2.1 |
Associated Gene/Transcript | tj-RB |
Protein status: | RT01149.pep: Imported from assembly |
Sequenced Size: | 1562 |
Gene | Date | Evidence |
---|---|---|
CG10034 | 2006-05-19 | RT target |
tj | 2008-12-18 | 5.12 accounting |
1562 bp assembled on 2011-07-27
GenBank Submission: BT044479.1
> RT01149.complete GAAGTTATCAGTCGACATGGAAGATCCCACCATAAACGACACGTACGTTC AGGAGTTTGATCTGCACCACCTGGAGGTGGGCGGAAATGGAGCTGGCCAA TCGCATGGAGCCGGTGCCGCGTCCCAGGTCACGACTTTGGGCCATGTGAA GCGCGAGGATCACAGTCCACCGCAGCCGGTGGCGGTTAAATGGACGACAA TCCACGGCGATCCCACGAATCCGGACGATGACCCGGACTCGCTGCCGCTG TCCGGACCAGAGCCCGCCGGAGCAGTGGAGGTCTCGCCATCGCCGCACAT CAAGCTGAGGTCCTTCTCCGGCCATCACCAGTGGCACATGGACGAACGGC GCCTGCAACCGCTCTCTCCGCCACCAGAGCAGTATGGTCCGCTGCCCGGA CAGGCGATTCTGGTGAACACATCTTCGGGAGCGGGCGTTCCGGGCGGAGT GCCCTCAACGCCGCCGGAAACGCCACCAGTAGTGGGCTCGCCCACGGGCA GCAGCAGCTGTCCGGCTCAGACTTACGCACACCACTATGCGAGGACACCG GGCAGCTCCGTATCCGTATCCGCCTCCGCCGCCGCCGCAGCTGCTGCCTC CGCCGGAGCAGCATCGGTGAGTGCCGGACTGAGCCATGACATGATGTGGC TGACCAACTCGATACGGGCGGACCAGCAGCCGCTGGATCTGCGGCCTTTG CCCTATCCGGGCTCCCAGGAGGAGGCGGAGGAGTGGGACAGACAGCGGGA CTACGCCCTGCAGGCGGCGGCAGCTCATCACCACCATCACGGACAGCCGC TGATGCAGGCGCAGCATCATCCGCATGGACACGGCGGTCATCCCCACCAG GTGATGCTGCAGCAGAGCAAGTATCCGCACCACCATCACCACCACTTCCA CAATCTGGAACTGACGCCCATCAACATGCACTCGAACTCGTACGGTAGTG CTTCGGGTGCCCTGACGCCCACCTGTCTGCCCCAAGTGCCCAGCAACGGG AGTGGCAGCAGCGGAGGCGGAGGAGGCAGTGGAAGCGGGAGTGGTGGACC CGGCAGCGTGGGTGGCGGCTCCTGCGTCATCACACGGGCTGCCCTTCAGC CGTGCCGCCCGCTCTCCGCCAGCTCGACCAGATCCTCGAACAACATGTCG CCCAGAACCTGTTCGGGTGCCTACAGTAATGCCACGCTGGAGGATTGCCT CAATGACGACATGCTGACCACGTTGACGGTGCGGGAGCTGAACAAGCGGC TCCATGGTTGCCCACGGGAGGAGGTAGTGCGTCTGAAGCAGAAGCGACGC ACCCTGAAGAATCGCGGCTATGCCCAGAACTGCCGGTCCAAGCGACTCCA TCAGCGCCACGAACTGGAGAAGGCCAACCGGGTGCTCAACCAGGATCTGC ACCGCCTGAAGCTGGAGTACTCGAGGGTCTGCCAGGAGCGGGATGCCCTC ATGCAGCGTCTGCAGCGGGCGGCAAATGGCGGAGTCGGTGCGGGAGGTGC AACCGCCGGCGGCGATAGCCAAAGCTCTCCGGAATTCTACCTCTGAAAGC TTTATCGACCAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tj-RB | 3179 | tj-RB | 183..1712 | 17..1546 | 7650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19463300..19464829 | 17..1546 | 7650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19464762..19466291 | 17..1546 | 7650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19464762..19466291 | 17..1546 | 7650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19463292..19464273 | 9..990 | 95 | == | Plus |
chr2L | 19464353..19464832 | 1070..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RA | 1..1530 | 17..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RB | 3..1536 | 14..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RC | 3..1539 | 14..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RA | 1..1530 | 17..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RC | 3..1539 | 14..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RA | 1..1530 | 17..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RB | 175..1715 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RC | 488..2028 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RA | 1..1530 | 17..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tj-RC | 488..2028 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19464754..19466294 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19464754..19466294 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19464754..19466294 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19464754..19466294 | 9..1550 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19464754..19466294 | 9..1550 | 99 | Plus |
Translation from 1 to 1545
> RT01149.pep KLSVDMEDPTINDTYVQEFDLHHLEVGGNGAGQSHGAGAASQVTTLGHVK REDHSPPQPVAVKWTTIHGDPTNPDDDPDSLPLSGPEPAGAVEVSPSPHI KLRSFSGHHQWHMDERRLQPLSPPPEQYGPLPGQAILVNTSSGAGVPGGV PSTPPETPPVVGSPTGSSSCPAQTYAHHYARTPGSSVSVSASAAAAAAAS AGAASVSAGLSHDMMWLTNSIRADQQPLDLRPLPYPGSQEEAEEWDRQRD YALQAAAAHHHHHGQPLMQAQHHPHGHGGHPHQVMLQQSKYPHHHHHHFH NLELTPINMHSNSYGSASGALTPTCLPQVPSNGSGSSGGGGGSGSGSGGP GSVGGGSCVITRAALQPCRPLSASSTRSSNNMSPRTCSGAYSNATLEDCL NDDMLTTLTVRELNKRLHGCPREEVVRLKQKRRTLKNRGYAQNCRSKRLH QRHELEKANRVLNQDLHRLKLEYSRVCQERDALMQRLQRAANGGVGAGGA TAGGDSQSSPEFYL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14237-PA | 524 | GF14237-PA | 1..524 | 6..514 | 1894 | 81.6 | Plus |
Dana\GF12187-PA | 132 | GF12187-PA | 10..116 | 392..485 | 184 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21184-PA | 507 | GG21184-PA | 1..507 | 6..514 | 2625 | 98 | Plus |
Dere\GG22047-PA | 132 | GG22047-PA | 10..116 | 392..485 | 186 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11103-PA | 524 | GH11103-PA | 1..524 | 6..514 | 1313 | 59.2 | Plus |
Dgri\GH21986-PA | 132 | GH21986-PA | 10..116 | 392..485 | 187 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tj-PB | 511 | CG10034-PB | 3..511 | 6..514 | 2749 | 100 | Plus |
tj-PC | 555 | CG10034-PC | 3..511 | 6..514 | 2749 | 100 | Plus |
maf-S-PA | 132 | CG9954-PA | 10..116 | 392..485 | 177 | 40.2 | Plus |
maf-S-PB | 137 | CG9954-PB | 27..121 | 400..485 | 176 | 41.1 | Plus |
dsx-PF | 427 | CG11094-PF | 135..332 | 251..390 | 167 | 30.8 | Plus |
dsx-PC | 427 | CG11094-PC | 135..332 | 251..390 | 167 | 30.8 | Plus |
dsx-PB | 427 | CG11094-PB | 135..332 | 251..390 | 167 | 30.8 | Plus |
dsx-PD | 549 | CG11094-PD | 135..332 | 251..390 | 167 | 30.8 | Plus |
dsx-PA | 549 | CG11094-PA | 135..332 | 251..390 | 167 | 30.8 | Plus |
dsx-PE | 572 | CG11094-PE | 135..332 | 251..390 | 167 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18225-PA | 509 | GI18225-PA | 1..509 | 6..514 | 1341 | 60.2 | Plus |
Dmoj\GI19689-PA | 132 | GI19689-PA | 10..116 | 392..485 | 192 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21212-PA | 497 | GL21212-PA | 1..497 | 6..514 | 1700 | 70.1 | Plus |
Dper\GL17038-PA | 132 | GL17038-PA | 22..80 | 400..456 | 185 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10021-PA | 497 | GA10021-PA | 1..497 | 6..514 | 1700 | 70.1 | Plus |
Dpse\GA22151-PA | 132 | GA22151-PA | 22..80 | 400..456 | 185 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17351-PA | 506 | GM17351-PA | 1..506 | 6..514 | 2621 | 98.6 | Plus |
Dsec\GM22031-PA | 132 | GM22031-PA | 10..116 | 392..485 | 185 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12036-PA | 132 | GD12036-PA | 1..132 | 382..514 | 690 | 98.5 | Plus |
Dsim\GD11528-PA | 132 | GD11528-PA | 10..116 | 392..485 | 185 | 40.2 | Plus |
Dsim\GD11529-PA | 92 | GD11529-PA | 1..76 | 417..485 | 155 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18132-PA | 494 | GJ18132-PA | 1..494 | 6..514 | 1360 | 61.5 | Plus |
Dvir\GJ17266-PA | 132 | GJ17266-PA | 10..116 | 392..485 | 189 | 40.2 | Plus |
Translation from 10 to 1545
> RT01149.hyp MKMEDPTINDTYVQEFDLHHLEVGGNGAGQSHGAGAASQVTTLGHVKRED HSPPQPVAVKWTTIHGDPTNPDDDPDSLPLSGPEPAGAVEVSPSPHIKLR SFSGHHQWHMDERRLQPLSPPPEQYGPLPGQAILVNTSSGAGVPGGVPST PPETPPVVGSPTGSSSCPAQTYAHHYARTPGSSVSVSASAAAAAAASAGA ASVSAGLSHDMMWLTNSIRADQQPLDLRPLPYPGSQEEAEEWDRQRDYAL QAAAAHHHHHGQPLMQAQHHPHGHGGHPHQVMLQQSKYPHHHHHHFHNLE LTPINMHSNSYGSASGALTPTCLPQVPSNGSGSSGGGGGSGSGSGGPGSV GGGSCVITRAALQPCRPLSASSTRSSNNMSPRTCSGAYSNATLEDCLNDD MLTTLTVRELNKRLHGCPREEVVRLKQKRRTLKNRGYAQNCRSKRLHQRH ELEKANRVLNQDLHRLKLEYSRVCQERDALMQRLQRAANGGVGAGGATAG GDSQSSPEFYL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tj-PB | 511 | CG10034-PB | 1..511 | 1..511 | 2759 | 100 | Plus |
tj-PC | 555 | CG10034-PC | 1..511 | 1..511 | 2759 | 100 | Plus |
maf-S-PA | 132 | CG9954-PA | 10..116 | 389..482 | 177 | 40.2 | Plus |
maf-S-PB | 137 | CG9954-PB | 27..121 | 397..482 | 176 | 41.1 | Plus |
dsx-PF | 427 | CG11094-PF | 135..332 | 248..387 | 167 | 30.8 | Plus |