Clone RT01149 Report

Search the DGRC for RT01149

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:49
Vector:pCR2.1
Associated Gene/Transcripttj-RB
Protein status:RT01149.pep: Imported from assembly
Sequenced Size:1562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10034 2006-05-19 RT target
tj 2008-12-18 5.12 accounting

Clone Sequence Records

RT01149.complete Sequence

1562 bp assembled on 2011-07-27

GenBank Submission: BT044479.1

> RT01149.complete
GAAGTTATCAGTCGACATGGAAGATCCCACCATAAACGACACGTACGTTC
AGGAGTTTGATCTGCACCACCTGGAGGTGGGCGGAAATGGAGCTGGCCAA
TCGCATGGAGCCGGTGCCGCGTCCCAGGTCACGACTTTGGGCCATGTGAA
GCGCGAGGATCACAGTCCACCGCAGCCGGTGGCGGTTAAATGGACGACAA
TCCACGGCGATCCCACGAATCCGGACGATGACCCGGACTCGCTGCCGCTG
TCCGGACCAGAGCCCGCCGGAGCAGTGGAGGTCTCGCCATCGCCGCACAT
CAAGCTGAGGTCCTTCTCCGGCCATCACCAGTGGCACATGGACGAACGGC
GCCTGCAACCGCTCTCTCCGCCACCAGAGCAGTATGGTCCGCTGCCCGGA
CAGGCGATTCTGGTGAACACATCTTCGGGAGCGGGCGTTCCGGGCGGAGT
GCCCTCAACGCCGCCGGAAACGCCACCAGTAGTGGGCTCGCCCACGGGCA
GCAGCAGCTGTCCGGCTCAGACTTACGCACACCACTATGCGAGGACACCG
GGCAGCTCCGTATCCGTATCCGCCTCCGCCGCCGCCGCAGCTGCTGCCTC
CGCCGGAGCAGCATCGGTGAGTGCCGGACTGAGCCATGACATGATGTGGC
TGACCAACTCGATACGGGCGGACCAGCAGCCGCTGGATCTGCGGCCTTTG
CCCTATCCGGGCTCCCAGGAGGAGGCGGAGGAGTGGGACAGACAGCGGGA
CTACGCCCTGCAGGCGGCGGCAGCTCATCACCACCATCACGGACAGCCGC
TGATGCAGGCGCAGCATCATCCGCATGGACACGGCGGTCATCCCCACCAG
GTGATGCTGCAGCAGAGCAAGTATCCGCACCACCATCACCACCACTTCCA
CAATCTGGAACTGACGCCCATCAACATGCACTCGAACTCGTACGGTAGTG
CTTCGGGTGCCCTGACGCCCACCTGTCTGCCCCAAGTGCCCAGCAACGGG
AGTGGCAGCAGCGGAGGCGGAGGAGGCAGTGGAAGCGGGAGTGGTGGACC
CGGCAGCGTGGGTGGCGGCTCCTGCGTCATCACACGGGCTGCCCTTCAGC
CGTGCCGCCCGCTCTCCGCCAGCTCGACCAGATCCTCGAACAACATGTCG
CCCAGAACCTGTTCGGGTGCCTACAGTAATGCCACGCTGGAGGATTGCCT
CAATGACGACATGCTGACCACGTTGACGGTGCGGGAGCTGAACAAGCGGC
TCCATGGTTGCCCACGGGAGGAGGTAGTGCGTCTGAAGCAGAAGCGACGC
ACCCTGAAGAATCGCGGCTATGCCCAGAACTGCCGGTCCAAGCGACTCCA
TCAGCGCCACGAACTGGAGAAGGCCAACCGGGTGCTCAACCAGGATCTGC
ACCGCCTGAAGCTGGAGTACTCGAGGGTCTGCCAGGAGCGGGATGCCCTC
ATGCAGCGTCTGCAGCGGGCGGCAAATGGCGGAGTCGGTGCGGGAGGTGC
AACCGCCGGCGGCGATAGCCAAAGCTCTCCGGAATTCTACCTCTGAAAGC
TTTATCGACCAT

RT01149.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
tj-RB 3179 tj-RB 183..1712 17..1546 7650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19463300..19464829 17..1546 7650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19464762..19466291 17..1546 7650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19464762..19466291 17..1546 7650 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:50:27 has no hits.

RT01149.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:35 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19463292..19464273 9..990 95 == Plus
chr2L 19464353..19464832 1070..1550 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:49 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:25 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RB 3..1536 14..1546 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:20 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RC 3..1539 14..1550 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:47:27 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:05 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RC 3..1539 14..1550 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:32:35 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:25 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RB 175..1715 9..1550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:20 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RC 488..2028 9..1550 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:47:27 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:05 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
tj-RC 488..2028 9..1550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:35 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19464754..19466294 9..1550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:35 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19464754..19466294 9..1550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:35 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19464754..19466294 9..1550 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:20 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19464754..19466294 9..1550 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:10:04 Download gff for RT01149.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19464754..19466294 9..1550 99   Plus

RT01149.pep Sequence

Translation from 1 to 1545

> RT01149.pep
KLSVDMEDPTINDTYVQEFDLHHLEVGGNGAGQSHGAGAASQVTTLGHVK
REDHSPPQPVAVKWTTIHGDPTNPDDDPDSLPLSGPEPAGAVEVSPSPHI
KLRSFSGHHQWHMDERRLQPLSPPPEQYGPLPGQAILVNTSSGAGVPGGV
PSTPPETPPVVGSPTGSSSCPAQTYAHHYARTPGSSVSVSASAAAAAAAS
AGAASVSAGLSHDMMWLTNSIRADQQPLDLRPLPYPGSQEEAEEWDRQRD
YALQAAAAHHHHHGQPLMQAQHHPHGHGGHPHQVMLQQSKYPHHHHHHFH
NLELTPINMHSNSYGSASGALTPTCLPQVPSNGSGSSGGGGGSGSGSGGP
GSVGGGSCVITRAALQPCRPLSASSTRSSNNMSPRTCSGAYSNATLEDCL
NDDMLTTLTVRELNKRLHGCPREEVVRLKQKRRTLKNRGYAQNCRSKRLH
QRHELEKANRVLNQDLHRLKLEYSRVCQERDALMQRLQRAANGGVGAGGA
TAGGDSQSSPEFYL*

RT01149.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14237-PA 524 GF14237-PA 1..524 6..514 1894 81.6 Plus
Dana\GF12187-PA 132 GF12187-PA 10..116 392..485 184 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21184-PA 507 GG21184-PA 1..507 6..514 2625 98 Plus
Dere\GG22047-PA 132 GG22047-PA 10..116 392..485 186 40.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11103-PA 524 GH11103-PA 1..524 6..514 1313 59.2 Plus
Dgri\GH21986-PA 132 GH21986-PA 10..116 392..485 187 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
tj-PB 511 CG10034-PB 3..511 6..514 2749 100 Plus
tj-PC 555 CG10034-PC 3..511 6..514 2749 100 Plus
maf-S-PA 132 CG9954-PA 10..116 392..485 177 40.2 Plus
maf-S-PB 137 CG9954-PB 27..121 400..485 176 41.1 Plus
dsx-PF 427 CG11094-PF 135..332 251..390 167 30.8 Plus
dsx-PC 427 CG11094-PC 135..332 251..390 167 30.8 Plus
dsx-PB 427 CG11094-PB 135..332 251..390 167 30.8 Plus
dsx-PD 549 CG11094-PD 135..332 251..390 167 30.8 Plus
dsx-PA 549 CG11094-PA 135..332 251..390 167 30.8 Plus
dsx-PE 572 CG11094-PE 135..332 251..390 167 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18225-PA 509 GI18225-PA 1..509 6..514 1341 60.2 Plus
Dmoj\GI19689-PA 132 GI19689-PA 10..116 392..485 192 40.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21212-PA 497 GL21212-PA 1..497 6..514 1700 70.1 Plus
Dper\GL17038-PA 132 GL17038-PA 22..80 400..456 185 57.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10021-PA 497 GA10021-PA 1..497 6..514 1700 70.1 Plus
Dpse\GA22151-PA 132 GA22151-PA 22..80 400..456 185 57.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17351-PA 506 GM17351-PA 1..506 6..514 2621 98.6 Plus
Dsec\GM22031-PA 132 GM22031-PA 10..116 392..485 185 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12036-PA 132 GD12036-PA 1..132 382..514 690 98.5 Plus
Dsim\GD11528-PA 132 GD11528-PA 10..116 392..485 185 40.2 Plus
Dsim\GD11529-PA 92 GD11529-PA 1..76 417..485 155 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18132-PA 494 GJ18132-PA 1..494 6..514 1360 61.5 Plus
Dvir\GJ17266-PA 132 GJ17266-PA 10..116 392..485 189 40.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24800-PA 516 GK24800-PA 1..516 6..514 1575 71.8 Plus
Dwil\GK21710-PA 132 GK21710-PA 10..80 392..456 188 53.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13257-PA 507 GE13257-PA 1..507 6..514 2598 97.4 Plus
Dyak\maf-S-PA 132 GE12128-PA 10..116 392..485 185 40.2 Plus

RT01149.hyp Sequence

Translation from 10 to 1545

> RT01149.hyp
MKMEDPTINDTYVQEFDLHHLEVGGNGAGQSHGAGAASQVTTLGHVKRED
HSPPQPVAVKWTTIHGDPTNPDDDPDSLPLSGPEPAGAVEVSPSPHIKLR
SFSGHHQWHMDERRLQPLSPPPEQYGPLPGQAILVNTSSGAGVPGGVPST
PPETPPVVGSPTGSSSCPAQTYAHHYARTPGSSVSVSASAAAAAAASAGA
ASVSAGLSHDMMWLTNSIRADQQPLDLRPLPYPGSQEEAEEWDRQRDYAL
QAAAAHHHHHGQPLMQAQHHPHGHGGHPHQVMLQQSKYPHHHHHHFHNLE
LTPINMHSNSYGSASGALTPTCLPQVPSNGSGSSGGGGGSGSGSGGPGSV
GGGSCVITRAALQPCRPLSASSTRSSNNMSPRTCSGAYSNATLEDCLNDD
MLTTLTVRELNKRLHGCPREEVVRLKQKRRTLKNRGYAQNCRSKRLHQRH
ELEKANRVLNQDLHRLKLEYSRVCQERDALMQRLQRAANGGVGAGGATAG
GDSQSSPEFYL*

RT01149.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
tj-PB 511 CG10034-PB 1..511 1..511 2759 100 Plus
tj-PC 555 CG10034-PC 1..511 1..511 2759 100 Plus
maf-S-PA 132 CG9954-PA 10..116 389..482 177 40.2 Plus
maf-S-PB 137 CG9954-PB 27..121 397..482 176 41.1 Plus
dsx-PF 427 CG11094-PF 135..332 248..387 167 30.8 Plus