Clone RT01157 Report

Search the DGRC for RT01157

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:11
Well:57
Vector:pCR2.1
Associated Gene/Transcriptfd96Cb-RA
Protein status:RT01157.pep: gold
Sequenced Size:816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11922 2006-05-19 RT target
fd96Cb 2008-04-29 Release 5.5 accounting
fd96Cb 2008-08-15 Release 5.9 accounting
fd96Cb 2008-12-18 5.12 accounting

Clone Sequence Records

RT01157.complete Sequence

816 bp (816 high quality bases) assembled on 2011-07-27

GenBank Submission: BT028866.2

> RT01157.complete
ATGCCACGCCCATTGAAAATGAGCTACGGTGATCAGAAGCCTCCCTACTC
GTACATATCATTAACGGCCATGGCCATAATACACTCGCCGCAAAGATTGC
TGCCGCTCAGTGAGATATATCGATTTATAATGGATCAGTTTCCATTCTAC
CGGAAGAACACGCAAAAGTGGCAAAACTCACTGCGGCACAATCTCAGCTT
CAACGATTGCTTCATCAAGGTGCCGAGGAATGTGACCAAGGCCGGCAAGG
GCTCCTACTGGACACTTCATCCCATGGCCTTCGATATGTTCGAGAATGGC
AGCCTGCTGCGGCGGCGAAAACGTTTCCGCGTCAAGCAGCTCGAGAAGGA
TATTTCGAACTGGAAATTAGCCGCCGCCGCCAATACGGAGATGGTGACCC
ACTATCTGGACGATCAGCTAACGCAGATGGCCTTTGCCGATCCGGCGCGG
CATGGTCATGTGCTCGCCAATGCATCTGCTGCCCAAATGTCACCCTACAA
GGCTACTCCGCCGATCCTTCCGACGACTGTGACCCAACTTCCGGCGCGGC
CAAAGCGCGCCTTCACCATCGAGAGTCTCATGGCTCCGGATCCGGCGAGC
ACGCCAAATGAGGGATTAGTGCCCATGGAGTACGGCAGTCCCGATGCCGT
CGCGTTGGAAAAGCCGCCGTTTAATTTGCCATTCAATTTCAACGAACTCG
CCGCGCAGTATCAGTTATACTTCCCAAGTTTTTTCTACAACGGCCAATAT
GGCAACATACCTTGCTACCAGAAAACACCGCCGCTTTTTCATAACGGCCC
GTTGCCCGTCTTTTAG

RT01157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
fd96Cb-RA 825 fd96Cb-RA 10..823 1..814 4070 100 Plus
fd96Ca-RA 1119 fd96Ca-RA 85..224 85..224 280 80 Plus
fd96Ca-RA 1119 fd96Ca-RA 242..315 242..315 205 85.1 Plus
fd96Ca-RA 1119 fd96Ca-RA 24..77 24..77 165 87 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20918271..20919084 1..814 4070 100 Plus
chr3R 27901430 chr3R 20906732..20907023 24..315 455 77.1 Plus
chr3L 24539361 chr3L 21464710..21464804 263..169 190 80 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:41:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25095118..25095931 1..814 4070 100 Plus
3R 32079331 3R 25083575..25083866 24..315 455 77.1 Plus
3L 28110227 3L 21475761..21475855 263..169 190 80 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24835949..24836762 1..814 4070 100 Plus
3R 31820162 3R 24824467..24824606 85..224 280 80 Plus
3R 31820162 3R 24824624..24824697 242..315 205 85.1 Plus
3R 31820162 3R 24824406..24824459 24..77 165 87 Plus
Blast to na_te.dros performed on 2019-03-15 10:50:24 has no hits.

RT01157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:33 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20918271..20919085 1..816 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:55:55 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 1..814 1..814 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:24 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 1..815 1..816 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:17 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 1..815 1..816 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-11-04 14:48:12 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 1..814 1..814 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:02 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 1..815 1..816 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:34:11 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 10..823 1..814 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:24 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 10..824 1..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:17 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 107..921 1..816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-11-04 14:48:12 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 10..823 1..814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:02 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
fd96Cb-RA 107..921 1..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:33 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25095118..25095932 1..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:33 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25095118..25095932 1..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:33 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25095118..25095932 1..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:17 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20920840..20921654 1..816 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:39 Download gff for RT01157.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24835949..24836763 1..816 99   Plus

RT01157.pep Sequence

Translation from 0 to 815

> RT01157.pep
MPRPLKMSYGDQKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPFY
RKNTQKWQNSLRHNLSFNDCFIKVPRNVTKAGKGSYWTLHPMAFDMFENG
SLLRRRKRFRVKQLEKDISNWKLAAAANTEMVTHYLDDQLTQMAFADPAR
HGHVLANASAAQMSPYKATPPILPTTVTQLPARPKRAFTIESLMAPDPAS
TPNEGLVPMEYGSPDAVALEKPPFNLPFNFNELAAQYQLYFPSFFYNGQY
GNIPCYQKTPPLFHNGPLPVF*

RT01157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17888-PA 272 GF17888-PA 1..272 1..271 1065 74.8 Plus
Dana\GF17887-PA 374 GF17887-PA 1..222 1..197 554 51.3 Plus
Dana\GF16437-PA 491 GF16437-PA 180..311 2..127 418 58.3 Plus
Dana\GF13549-PA 456 GF13549-PA 78..175 13..110 345 62.2 Plus
Dana\GF23559-PA 508 GF23559-PA 70..174 13..117 331 57.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11360-PA 265 GG11360-PA 1..265 7..271 1321 92.9 Plus
Dere\GG11359-PA 373 GG11359-PA 1..231 1..197 540 49.6 Plus
Dere\GG12065-PA 511 GG12065-PA 200..331 2..127 417 58.3 Plus
Dere\GG22808-PA 454 GG22808-PA 85..182 13..110 344 62.2 Plus
Dere\GG13233-PA 507 GG13233-PA 70..174 13..117 330 57.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18036-PA 294 GH18036-PA 1..294 1..271 682 50.5 Plus
Dgri\GH18035-PA 395 GH18035-PA 1..240 1..197 531 48.3 Plus
Dgri\GH18716-PA 492 GH18716-PA 177..308 2..127 417 58.3 Plus
Dgri\GH21797-PA 456 GH21797-PA 79..176 13..110 343 62.2 Plus
Dgri\GH15375-PA 508 GH15375-PA 70..174 13..117 330 57.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
fd96Cb-PA 271 CG11922-PA 1..271 1..271 1460 100 Plus
fd96Ca-PB 372 CG11921-PB 1..238 1..204 552 49 Plus
fd96Ca-PA 372 CG11921-PA 1..238 1..204 552 49 Plus
fkh-PD 510 CG10002-PD 199..330 2..127 406 58.3 Plus
fkh-PB 510 CG10002-PB 199..330 2..127 406 58.3 Plus
fkh-PA 510 CG10002-PA 199..330 2..127 406 58.3 Plus
fkh-PE 518 CG10002-PE 199..330 2..127 406 58.3 Plus
fkh-PC 692 CG10002-PC 199..330 2..127 406 58.3 Plus
croc-PA 508 CG5069-PA 70..219 13..170 353 45.6 Plus
fd59A-PA 456 CG3668-PA 85..182 13..110 337 62.2 Plus
FoxL1-PB 365 CG1132-PB 83..192 5..108 326 57.3 Plus
FoxL1-PA 365 CG1132-PA 83..192 5..108 326 57.3 Plus
slp2-PA 451 CG2939-PA 170..275 3..108 295 51.9 Plus
slp1-PA 322 CG16738-PA 111..215 6..106 260 47.6 Plus
fd102C-PA 599 CG11152-PA 127..227 11..113 256 45.6 Plus
FoxK-PK 740 CG11799-PK 437..543 4..108 240 47.7 Plus
FoxK-PP 745 CG11799-PP 443..549 4..108 240 47.7 Plus
FoxK-PO 745 CG11799-PO 442..548 4..108 240 47.7 Plus
FoxK-PJ 746 CG11799-PJ 443..549 4..108 240 47.7 Plus
FoxK-PI 746 CG11799-PI 443..549 4..108 240 47.7 Plus
FoxK-PH 746 CG11799-PH 443..549 4..108 240 47.7 Plus
FoxK-PG 746 CG11799-PG 443..549 4..108 240 47.7 Plus
FoxK-PN 760 CG11799-PN 443..549 4..108 240 47.7 Plus
bin-PA 676 CG18647-PA 310..462 12..165 226 38 Plus
fd19B-PA 260 CG9571-PA 58..168 13..134 221 38.5 Plus
CHES-1-like-PC 1267 CG12690-PC 698..777 11..91 195 45.7 Plus
CHES-1-like-PD 1268 CG12690-PD 698..777 11..91 195 45.7 Plus
CHES-1-like-PB 1268 CG12690-PB 698..777 11..91 195 45.7 Plus
CHES-1-like-PA 1268 CG12690-PA 698..777 11..91 195 45.7 Plus
FoxP-PD 442 CG43067-PD 326..404 11..94 187 42.9 Plus
jumu-PA 719 CG4029-PA 411..491 13..91 186 44.4 Plus
FoxP-PC 520 CG43067-PC 326..417 11..107 167 36.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23783-PA 286 GI23783-PA 1..286 1..271 542 46.8 Plus
Dmoj\GI23781-PA 391 GI23781-PA 1..128 1..128 524 72.7 Plus
Dmoj\GI22864-PA 501 GI22864-PA 187..318 2..127 417 58.3 Plus
Dmoj\GI20546-PA 481 GI20546-PA 94..191 13..110 346 62.2 Plus
Dmoj\GI12979-PA 505 GI12979-PA 70..174 13..117 331 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21899-PA 260 GL21899-PA 1..258 1..259 767 56.3 Plus
Dper\GL21898-PA 379 GL21898-PA 1..232 1..197 552 51.7 Plus
Dper\GL23472-PA 586 GL23472-PA 170..301 2..127 417 58.3 Plus
Dper\GL10130-PA 457 GL10130-PA 73..170 13..110 345 62.2 Plus
Dper\GL15055-PA 423 GL15055-PA 70..174 13..117 329 57.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27944-PA 260 GA27944-PA 1..258 1..259 736 55.3 Plus
Dpse\GA10002-PB 481 GA10002-PB 170..301 2..127 417 58.3 Plus
Dpse\GA17601-PA 457 GA17601-PA 73..170 13..110 345 62.2 Plus
Dpse\GA18636-PA 523 GA18636-PA 70..174 13..117 329 57.1 Plus
Dpse\GA10915-PA 377 GA10915-PA 85..180 12..101 318 60.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17802-PA 265 GM17802-PA 1..265 7..271 1412 99.2 Plus
Dsec\GM17800-PA 372 GM17800-PA 1..231 1..197 543 49.6 Plus
Dsec\GM16286-PA 505 GM16286-PA 194..325 2..127 417 58.3 Plus
Dsec\GM15965-PA 456 GM15965-PA 85..182 13..110 345 62.2 Plus
Dsec\GM22139-PA 507 GM22139-PA 70..174 13..117 330 57.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21173-PA 265 GD21173-PA 1..265 7..271 1391 97.7 Plus
Dsim\GD18028-PA 510 GD18028-PA 199..330 2..127 417 58.3 Plus
Dsim\GD11717-PA 456 GD11717-PA 85..182 13..110 344 62.2 Plus
Dsim\GD12117-PA 491 GD12117-PA 70..174 13..117 330 57.1 Plus
Dsim\GD21171-PA 87 GD21171-PA 1..73 1..73 326 79.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23595-PA 392 GJ23595-PA 1..243 1..197 540 49.4 Plus
Dvir\fkh-PA 502 GJ14162-PA 187..318 2..127 418 58.3 Plus
Dvir\GJ22399-PA 471 GJ22399-PA 85..182 13..110 344 62.2 Plus
Dvir\GJ13122-PA 508 GJ13122-PA 70..174 13..117 331 57.1 Plus
Dvir\GJ15456-PA 348 GJ15456-PA 84..179 12..101 318 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13405-PA 211 GK13405-PA 1..187 1..184 601 62.6 Plus
Dwil\GK13404-PA 389 GK13404-PA 1..236 1..197 543 50.4 Plus
Dwil\GK10997-PA 652 GK10997-PA 168..299 2..127 418 58.3 Plus
Dwil\GK20787-PA 467 GK20787-PA 79..176 13..110 345 62.2 Plus
Dwil\GK16995-PA 528 GK16995-PA 70..174 13..117 330 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23557-PA 270 GE23557-PA 1..270 7..271 1312 92.3 Plus
Dyak\GE23556-PA 374 GE23556-PA 1..232 1..197 538 50.2 Plus
Dyak\GE10507-PA 509 GE10507-PA 198..329 2..127 417 58.3 Plus
Dyak\GE14241-PA 454 GE14241-PA 85..182 13..110 344 62.2 Plus
Dyak\GE22970-PA 507 GE22970-PA 70..174 13..117 330 57.1 Plus

RT01157.hyp Sequence

Translation from 1 to 813

> RT01157.hyp
MPRPLKMSYGDQKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPFY
RKNTQKWQNSLRHNLSFNDCFIKVPRNVTKAGKGSYWTLHPMAFDMFENG
SLLRRRKRFRVKQLEKDISNWKLAAAANTEMVTHYLDDQLTQMAFADPAR
HGHVLANASAAQMSPYKATPPILPTTVTQLPARPKRAFTIESLMAPDPAS
TPNEGLVPMEYGSPDAVALEKPPFNLPFNFNELAAQYQLYFPSFFYNGQY
GNIPCYQKTPPLFHNGPLPVF

RT01157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
fd96Cb-PA 271 CG11922-PA 1..271 1..271 1460 100 Plus
fd96Ca-PB 372 CG11921-PB 1..238 1..204 552 49 Plus
fd96Ca-PA 372 CG11921-PA 1..238 1..204 552 49 Plus
fkh-PD 510 CG10002-PD 199..330 2..127 406 58.3 Plus
fkh-PB 510 CG10002-PB 199..330 2..127 406 58.3 Plus