BDGP Sequence Production Resources |
Search the DGRC for RT02911
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 29 |
Well: | 11 |
Vector: | pCR2.1 |
Associated Gene/Transcript | bnk-RA |
Protein status: | RT02911.pep: gold |
Sequenced Size: | 939 |
939 bp assembled on 2010-02-26
GenBank Submission: BT099974.3
> RT02911.complete ATGAGCATCAGCACTTTCAACTTCCAGTTCTACAACTACAAGCTTAGCCC GTCCTCACCGGGATTCGGCAGCACAGCCTCCCGTTCCTCGTCCTCATGCA TCAGCGAACTGGAAATGGACATTGATGAGGACATGTCCGCCCAGCCCACC ATCACCTCCACGCCCAAGCCGCGCTTTACCAGCCAACTGGCCGTGGAACT GGCCAAAACGGAGCCGGGTAATGGCATATCCCCACTGCGACCCAAATTGC ATACGGCCCAGAAACGCTGGTCCATGGAGTTGAGGGAAAAAGTGCTGGAA ATGTCCAAGCGAAATAATGGCCAGGAGAAACCACAAACCGCACGACAGCA GGAACAGCGACAGCCACAGGAACAGCCACTGCAACAGGAGGAACTGCAGC ATCAGCAGCAGGAACCCACTGTCACCGACAAAATCAACTTCTTCAACAAG CTGACCAACACCTTTGAGTCGGGTTTCAGCAAGCTGATGCCCCAAGCAAG CTCCACCAACAACCGCTTCATAGCCATGTTGCGCACCGCCCGTCCTCAAA ACGTTGCCACAACCACCGCCAACAGCAGCACCGCCAACAGTTTCCTGGGC AGCGACCACAGTCTCAGTGGTTCCGTGACCGGACAAGTGCCACCACCCAA GCCCAAGAGACTGTCGGCCACCACCGCCCAGTTTGCCACTCCCCATGTAC CAGCCATGGGCGTGGGCAAGGGGGGCAGCCAGCGCAAGTGCTCCCTGCGC CGCAAGCCTTCGATGGACAAGTCGAGGGCCACCATCTCCCGCCAGAGTTC CAGTGCCTCAGTACGAACCCAGAACCACGCCATCATGGAGGACCTCAGTC TAGTGGTTCCCGTGAGATTGCGCATCGCGGAGTACGAGCAGCGCATCTCG ATGAGTGCTTAGCACTTCTATAGTGTCACCTAAATTCGC
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bnk-RA | 1572 | bnk-RA | 162..1073 | 1..912 | 4560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27015770..27016681 | 1..912 | 4440 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31193385..31194296 | 1..912 | 4560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30934216..30935127 | 1..912 | 4560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2549 | 336..580 | 227 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6893 | 306..415 | 187 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2515 | 322..463 | 172 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2616 | 306..519 | 157 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2810 | 356..590 | 144 | 56.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27015770..27016112 | 1..343 | 99 | == | Plus |
chr3R | 27016181..27016681 | 412..912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 1..912 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 1..912 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 1..912 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 1..912 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 162..1073 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 162..1073 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 24..935 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bnk-RA | 24..935 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31193385..31194296 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31193385..31194296 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31193385..31194296 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27019107..27020018 | 1..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30934216..30935127 | 1..912 | 100 | Plus |
Translation from 0 to 911
> RT02911.pep MSISTFNFQFYNYKLSPSSPGFGSTASRSSSSCISELEMDIDEDMSAQPT ITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLHTAQKRWSMELREKVLE MSKRNNGQEKPQTARQQEQRQPQEQPLQQEELQHQQQEPTVTDKINFFNK LTNTFESGFSKLMPQASSTNNRFIAMLRTARPQNVATTTANSSTANSFLG SDHSLSGSVTGQVPPPKPKRLSATTAQFATPHVPAMGVGKGGSQRKCSLR RKPSMDKSRATISRQSSSASVRTQNHAIMEDLSLVVPVRLRIAEYEQRIS MSA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18417-PA | 320 | GF18417-PA | 1..320 | 1..303 | 958 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11793-PA | 317 | GG11793-PA | 1..317 | 1..303 | 1359 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22241-PA | 318 | GH22241-PA | 1..318 | 1..303 | 669 | 49.3 | Plus |
Dgri\GH13977-PA | 318 | GH13977-PA | 1..318 | 1..303 | 663 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bnk-PA | 303 | CG1480-PA | 1..303 | 1..303 | 1534 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22320-PA | 307 | GI22320-PA | 1..307 | 1..303 | 632 | 50.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13541-PA | 312 | GL13541-PA | 1..312 | 1..303 | 746 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13256-PA | 310 | GA13256-PA | 1..310 | 1..303 | 751 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12923-PA | 303 | GM12923-PA | 1..303 | 1..303 | 1573 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21562-PA | 303 | GD21562-PA | 1..303 | 1..303 | 1573 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10507-PA | 296 | GJ10507-PA | 1..296 | 1..303 | 667 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22615-PA | 303 | GK22615-PA | 1..303 | 1..303 | 791 | 55.8 | Plus |
Dwil\bnk-PA | 300 | GK13899-PA | 1..300 | 1..303 | 786 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10921-PA | 315 | GE10921-PA | 1..315 | 1..303 | 1404 | 89.8 | Plus |
Translation from 1 to 911
> RT02911.hyp MSISTFNFQFYNYKLSPSSPGFGSTASRSSSSCISELEMDIDEDMSAQPT ITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLHTAQKRWSMELREKVLE MSKRNNGQEKPQTARQQEQRQPQEQPLQQEELQHQQQEPTVTDKINFFNK LTNTFESGFSKLMPQASSTNNRFIAMLRTARPQNVATTTANSSTANSFLG SDHSLSGSVTGQVPPPKPKRLSATTAQFATPHVPAMGVGKGGSQRKCSLR RKPSMDKSRATISRQSSSASVRTQNHAIMEDLSLVVPVRLRIAEYEQRIS MSA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bnk-PA | 303 | CG1480-PA | 1..303 | 1..303 | 1534 | 100 | Plus |