Clone RT02919 Report

Search the DGRC for RT02919

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:29
Well:19
Vector:pCR2.1
Associated Gene/TranscriptTwdlO-RA
Protein status:RT02919.pep: gold
Sequenced Size:717

Clone Sequence Records

RT02919.complete Sequence

717 bp assembled on 2010-02-26

GenBank Submission: BT100067.3

> RT02919.complete
ATGCGTTTCCTCATCGCTTTCTGCCTGATTGGTGCCGCATGCGCCCAGTA
CAACTACGGAGCGGGATTTACCGGAGCCGCCTCCGATAATGTTCCCAGTT
ACTCCGGAAGCAGTGTTGGCGACTCCTACGATGGTGCTGCCAGCAGCCCG
GACTACTCGGTCTCCAGCGAACTGAACAAGGAGTACTACACCTTCGAGGC
TGACGAGAGCCAGTTCGAGGATCCTCTGGCCGCCCAGAAGATCGCCGGCT
CCGTGAACAAGGGACTCCGCGTGGTCTTCATCAAGGGACCCGAAAACCGT
GGCCTGGAGAACGCTGCTCTGGCCCTCGCCAAGCAGGCTGCCGAGCAGAG
GACCGCCATCTATGTCTTGAACAAGCAGACCGACATTGGAGATCTGGCCC
AGAAATTCAATGCCGCCCGCCAGAACTCCAACCAGCGTCCTGAGGTGCAC
TTCGTCAAGTACAGGACTCCCGAGGATGCGGCCAATGCCCAGCGTGCCAT
CCAGTCGCAGTACGATAACCTGGGAGGATCCAGCCAGTCCATCAACGGAG
GAGTTGCCAACGCCATCAACTTCGCCTCCGCTGCCCCCGTGGTTCCCGCT
CGTCGTGGCCCCAACTACTCCCCACCAGCCGCCGCCACGAGCAACTCCTA
CCTGCCCGCCAACATCCTGCGTCGCCTGCGCATCCGTTAACACTTCTATA
GTGTCACCTAAATTCGC

RT02919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlO-RA 690 TwdlO-RA 1..690 1..690 3450 100 Plus
TwdlN-RA 1086 TwdlN-RA 563..910 244..591 975 85.3 Plus
TwdlL-RB 1073 TwdlL-RB 562..717 250..405 570 91 Plus
TwdlL-RB 1073 TwdlL-RB 754..902 442..590 370 83.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22449124..22449813 690..1 3405 99.6 Minus
chr3R 27901430 chr3R 22455550..22455897 244..591 975 85.3 Plus
chr3R 27901430 chr3R 22447869..22448209 590..250 865 83.6 Minus
chr3R 27901430 chr3R 22442828..22443165 254..591 835 83.1 Plus
chr3R 27901430 chr3R 22445762..22446102 590..250 820 82.7 Minus
chr3R 27901430 chr3R 22453408..22453687 251..530 695 83.2 Plus
chr3R 27901430 chr3R 22451186..22451493 558..251 685 81.5 Minus
chr3R 27901430 chr3R 22443873..22444184 579..268 645 80.4 Minus
chr3R 27901430 chr3R 22457278..22457564 245..531 520 78.7 Plus
chr3R 27901430 chr3R 22480047..22480160 265..378 285 83.3 Plus
chr3R 27901430 chr3R 22463765..22463827 442..504 210 88.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26626008..26626697 690..1 3450 100 Minus
3R 32079331 3R 26632435..26632782 244..591 975 85.3 Plus
3R 32079331 3R 26624751..26625091 590..250 880 83.9 Minus
3R 32079331 3R 26619707..26620044 254..591 820 82.8 Plus
3R 32079331 3R 26622641..26622981 590..250 820 82.7 Minus
3R 32079331 3R 26628051..26628379 579..251 730 81.5 Minus
3R 32079331 3R 26630293..26630572 251..530 710 83.6 Plus
3R 32079331 3R 26620752..26621063 579..268 645 80.4 Minus
3R 32079331 3R 26634164..26634450 245..531 520 78.7 Plus
3R 32079331 3R 26656944..26657057 265..378 285 83.3 Plus
3R 32079331 3R 26640644..26640706 442..504 210 88.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26366839..26367528 690..1 3450 100 Minus
3R 31820162 3R 26373266..26373613 244..591 975 85.3 Plus
3R 31820162 3R 26363531..26363812 531..250 810 85.8 Minus
3R 31820162 3R 26361583..26361894 579..268 645 80.4 Minus
3R 31820162 3R 26365767..26365922 405..250 570 91 Minus
3R 31820162 3R 26360538..26360683 254..399 535 91 Plus
3R 31820162 3R 26371124..26371272 251..399 535 90.6 Plus
3R 31820162 3R 26369062..26369210 399..251 475 87.9 Minus
3R 31820162 3R 26374995..26375146 245..396 415 84.8 Plus
3R 31820162 3R 26365582..26365730 590..442 370 83.2 Minus
3R 31820162 3R 26360726..26360875 442..591 360 82.6 Plus
3R 31820162 3R 26368882..26369019 579..442 330 82.6 Minus
3R 31820162 3R 26397775..26397888 265..378 285 83.3 Plus
3R 31820162 3R 26371315..26371403 442..530 250 85.3 Plus
3R 31820162 3R 26375192..26375281 442..531 210 82.2 Plus
3R 31820162 3R 26381475..26381537 442..504 210 88.8 Plus
3R 31820162 3R 26371569..26371604 645..680 150 94.4 Plus
3R 31820162 3R 26397952..26398061 442..551 145 75.4 Plus
Blast to na_te.dros performed on 2019-03-17 00:07:11 has no hits.

RT02919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:08:08 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22449124..22449813 1..690 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:15:12 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:55:07 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:58:15 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:12:41 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:15:12 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:55:07 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 1..690 1..690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:15 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 42..731 1..690 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:41 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlO-RA 42..731 1..690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:08 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26626008..26626697 1..690 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:08 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26626008..26626697 1..690 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:08 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26626008..26626697 1..690 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:15 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22451730..22452419 1..690 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:34 Download gff for RT02919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26366839..26367528 1..690 100   Minus

RT02919.pep Sequence

Translation from 0 to 689

> RT02919.pep
MRFLIAFCLIGAACAQYNYGAGFTGAASDNVPSYSGSSVGDSYDGAASSP
DYSVSSELNKEYYTFEADESQFEDPLAAQKIAGSVNKGLRVVFIKGPENR
GLENAALALAKQAAEQRTAIYVLNKQTDIGDLAQKFNAARQNSNQRPEVH
FVKYRTPEDAANAQRAIQSQYDNLGGSSQSINGGVANAINFASAAPVVPA
RRGPNYSPPAAATSNSYLPANILRRLRIR*

RT02919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18574-PA 231 GF18574-PA 1..231 1..229 883 84.1 Plus
Dana\GF18577-PA 228 GF18577-PA 1..227 1..227 589 59.8 Plus
Dana\GF16445-PA 295 GF16445-PA 128..294 55..229 579 72 Plus
Dana\GF18576-PA 281 GF18576-PA 116..281 55..228 544 67.8 Plus
Dana\GF16446-PA 245 GF16446-PA 1..242 1..224 527 49.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12180-PA 229 GG12180-PA 1..229 1..229 1136 96.1 Plus
Dere\GG12179-PA 239 GG12179-PA 1..238 1..227 624 57.1 Plus
Dere\GG11489-PA 274 GG11489-PA 63..274 37..228 596 62.9 Plus
Dere\GG11490-PA 285 GG11490-PA 118..284 55..229 580 72.6 Plus
Dere\GG12183-PA 220 GG12183-PA 1..219 1..227 558 59.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18877-PA 228 GH18877-PA 1..228 1..229 710 69.4 Plus
Dgri\GH18876-PA 232 GH18876-PA 1..232 1..228 623 56.1 Plus
Dgri\GH18727-PA 296 GH18727-PA 129..295 55..229 580 74.3 Plus
Dgri\GH18726-PA 286 GH18726-PA 7..286 4..228 560 48 Plus
Dgri\GH18880-PA 223 GH18880-PA 1..222 1..227 539 54.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlO-PA 229 CG6452-PA 1..229 1..229 1162 100 Plus
TwdlN-PA 309 CG5476-PA 106..308 20..229 643 63.8 Plus
TwdlK-PA 247 CG6460-PA 1..247 1..228 619 53.9 Plus
TwdlP-PA 220 CG14240-PA 1..219 1..227 612 60 Plus
TwdlJ-PB 274 CG5471-PB 3..273 2..227 610 52.4 Plus
TwdlL-PB 279 CG6447-PB 70..277 10..225 607 58.8 Plus
TwdlL-PA 285 CG6447-PA 76..283 10..225 607 58.8 Plus
TwdlB-PA 286 CG6478-PA 76..285 10..227 606 57.8 Plus
TwdlM-PA 288 CG5468-PA 78..288 11..226 590 56.6 Plus
TwdlH-PA 241 CG31080-PA 1..238 1..224 552 52 Plus
Tb-PA 283 CG5480-PA 1..280 1..221 460 41.4 Plus
TwdlD-PA 256 CG14243-PA 1..256 1..229 458 43.1 Plus
TwdlQ-PA 245 CG14250-PA 7..243 4..224 423 41.4 Plus
TwdlR-PA 325 CG31081-PA 40..226 31..220 315 39.1 Plus
TwdlX-PA 346 CG32571-PA 89..272 18..185 235 34.4 Plus
TwdlW-PA 308 CG4060-PA 140..256 66..186 225 45.5 Plus
TwdlG-PC 278 CG14643-PC 143..276 87..222 223 40.6 Plus
TwdlG-PB 278 CG14643-PB 143..276 87..222 223 40.6 Plus
TwdlG-PA 278 CG14643-PA 143..276 87..222 223 40.6 Plus
TwdlY-PA 247 CG32570-PA 43..243 20..220 216 30.3 Plus
TwdlF-PA 354 CG14639-PA 151..279 66..195 214 37.1 Plus
TwdlV-PA 251 CG14640-PA 1..250 1..221 202 29 Plus
Twdlalpha-PA 388 CG32574-PA 109..301 11..188 193 29.9 Plus
TwdlS-PA 228 CG14242-PA 40..181 51..199 186 34.2 Plus
TwdlZ-PB 210 CG32569-PB 27..201 50..213 184 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24734-PA 227 GI24734-PA 1..227 1..229 702 68.7 Plus
Dmoj\GI24737-PA 231 GI24737-PA 1..228 1..227 603 54.9 Plus
Dmoj\GI22879-PA 308 GI22879-PA 143..307 55..227 553 69.9 Plus
Dmoj\GI24735-PA 315 GI24735-PA 152..315 55..226 514 64.5 Plus
Dmoj\GI24736-PA 280 GI24736-PA 115..279 55..227 513 65.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24439-PA 231 GL24439-PA 1..231 1..229 855 81 Plus
Dper\GL24787-PA 213 GL24787-PA 1..213 1..229 815 76.7 Plus
Dper\GL23102-PA 264 GL23102-PA 1..262 1..225 615 51.6 Plus
Dper\GL24443-PA 277 GL24443-PA 113..276 58..227 604 71.2 Plus
Dper\GL23101-PA 316 GL23101-PA 149..315 55..229 575 71.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19605-PA 230 GA19605-PA 1..230 1..229 913 83.7 Plus
Dpse\GA12853-PA 225 GA12853-PA 1..224 1..227 616 59.8 Plus
Dpse\GA27141-PA 264 GA27141-PA 1..262 1..225 614 51.6 Plus
Dpse\GA18910-PA 316 GA18910-PA 149..315 55..229 575 71.4 Plus
Dpse\GA26613-PA 250 GA26613-PA 1..250 1..228 571 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10176-PA 229 GM10176-PA 1..229 1..229 1178 99.1 Plus
Dsec\GM10332-PA 280 GM10332-PA 113..279 55..229 579 72 Plus
Dsec\GM10179-PA 220 GM10179-PA 1..219 1..227 564 59.6 Plus
Dsec\GM10175-PA 247 GM10175-PA 1..247 1..228 555 53.9 Plus
Dsec\GM10331-PA 274 GM10331-PA 63..274 37..228 538 61.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18128-PA 229 GD18128-PA 1..229 1..229 1178 99.1 Plus
Dsim\GD21293-PA 309 GD21293-PA 142..308 55..229 580 72 Plus
Dsim\GD18131-PA 220 GD18131-PA 1..219 1..227 568 60 Plus
Dsim\GD18127-PA 247 GD18127-PA 1..247 1..228 540 53.9 Plus
Dsim\GD21292-PA 274 GD21292-PA 63..274 37..228 536 61.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14562-PA 230 GJ14562-PA 1..230 1..229 754 70.7 Plus
Dvir\GJ14563-PA 289 GJ14563-PA 126..289 55..226 571 66.3 Plus
Dvir\GJ14565-PA 226 GJ14565-PA 1..224 1..227 569 57.8 Plus
Dvir\GJ14173-PA 284 GJ14173-PA 1..284 1..228 540 47 Plus
Dvir\GJ14174-PA 245 GJ14174-PA 1..244 1..229 534 53.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13960-PA 229 GK13960-PA 1..229 1..229 866 78.9 Plus
Dwil\GK13964-PA 225 GK13964-PA 1..224 1..229 619 59.5 Plus
Dwil\GK13322-PA 298 GK13322-PA 131..297 55..229 566 70.9 Plus
Dwil\GK13963-PA 283 GK13963-PA 118..283 55..228 541 67.8 Plus
Dwil\GK13320-PA 284 GK13320-PA 121..284 55..226 520 66.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10624-PA 229 GE10624-PA 1..229 1..229 1156 97.4 Plus
Dyak\GE23680-PA 302 GE23680-PA 135..301 55..229 569 70.9 Plus
Dyak\GE10627-PA 220 GE10627-PA 1..219 1..227 559 58.1 Plus
Dyak\GE10623-PA 247 GE10623-PA 1..247 1..228 553 56.3 Plus
Dyak\GE23681-PA 234 GE23681-PA 1..231 1..224 540 51.7 Plus

RT02919.hyp Sequence

Translation from 1 to 689

> RT02919.hyp
MRFLIAFCLIGAACAQYNYGAGFTGAASDNVPSYSGSSVGDSYDGAASSP
DYSVSSELNKEYYTFEADESQFEDPLAAQKIAGSVNKGLRVVFIKGPENR
GLENAALALAKQAAEQRTAIYVLNKQTDIGDLAQKFNAARQNSNQRPEVH
FVKYRTPEDAANAQRAIQSQYDNLGGSSQSINGGVANAINFASAAPVVPA
RRGPNYSPPAAATSNSYLPANILRRLRIR*

RT02919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlO-PA 229 CG6452-PA 1..229 1..229 1162 100 Plus
TwdlN-PA 309 CG5476-PA 106..308 20..229 643 63.8 Plus
TwdlK-PA 247 CG6460-PA 1..247 1..228 619 53.9 Plus
TwdlP-PA 220 CG14240-PA 1..219 1..227 612 60 Plus
TwdlJ-PB 274 CG5471-PB 3..273 2..227 610 52.4 Plus