Clone RT02921 Report

Search the DGRC for RT02921

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:29
Well:21
Vector:pCR2.1
Associated Gene/TranscriptDrsl1-RA
Protein status:RT02921.pep: gold
Sequenced Size:237

Clone Sequence Records

RT02921.complete Sequence

237 bp assembled on 2010-02-26

GenBank Submission: BT100068.3

> RT02921.complete
ATGGAAATCAAGTTCCTAATTGTCCTGTCCGCTGTCTTGATGATAATTTT
CCTGGGAGCGGAAGAATCACATGCCGACTGCCTTTCCGGAAGATATAGGG
GTTCCTGTGCTGTGTGGCACAGGAAGAAGTGCGTAGATATCTGCCAGAGG
GAAGGGCGAACCAGTGGACACTGCAGCCCCAGTCTAAAATGCTGGTGCGA
AGGATGCTAACACTTCTATAGTGTCACCTAAATTCGC

RT02921.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Drs-l-RA 210 Drs-l-RA 1..210 1..210 1050 100 Plus
nc_10387.a 724 nc_10387.a 245..458 214..1 1040 99 Minus
Drs-RA 376 Drs-RA 214..263 161..210 205 94 Plus
Drs-RA 376 Drs-RA 83..174 30..121 160 78.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3335019..3335228 210..1 1035 99.5 Minus
chr3L 24539361 chr3L 3369075..3369255 30..210 260 76.2 Plus
chr3L 24539361 chr3L 3316390..3316449 150..209 195 88.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3335579..3335788 210..1 1050 100 Minus
3L 28110227 3L 3369651..3369831 30..210 260 76.2 Plus
3L 28110227 3L 3314448..3314585 71..208 210 76.8 Plus
3L 28110227 3L 3316984..3317043 150..209 195 88.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3335579..3335788 210..1 1050 100 Minus
3L 28103327 3L 3369782..3369831 161..210 205 94 Plus
3L 28103327 3L 3316984..3317043 150..209 195 88.3 Plus
3L 28103327 3L 3369651..3369742 30..121 160 78.2 Plus
3L 28103327 3L 3336239..3336289 121..71 150 86.2 Minus
3L 28103327 3L 3336146..3336191 208..163 140 86.9 Minus
Blast to na_te.dros performed on 2019-03-15 15:52:01 has no hits.

RT02921.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:52:40 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3335019..3335228 1..210 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:15:13 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drs-l-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:55:09 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drs-l-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:44:25 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drsl1-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:29 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drsl1-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:15:13 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drs-l-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:55:09 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drs-l-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:25 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drsl1-RA 1..210 1..210 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:29 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
Drsl1-RA 1..210 1..210 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:40 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3335579..3335788 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:40 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3335579..3335788 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:52:40 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3335579..3335788 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:25 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3335579..3335788 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:36 Download gff for RT02921.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3335579..3335788 1..210 100   Minus

RT02921.pep Sequence

Translation from 0 to 209

> RT02921.pep
MEIKFLIVLSAVLMIIFLGAEESHADCLSGRYRGSCAVWHRKKCVDICQR
EGRTSGHCSPSLKCWCEGC*

RT02921.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24279-PA 69 GF24279-PA 1..69 1..69 247 65.2 Plus
Dana\GF10208-PA 69 GF10208-PA 1..69 1..69 246 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14262-PA 69 GG14262-PA 1..69 1..69 295 79.7 Plus
Dere\GG15135-PA 70 GG15135-PA 2..70 1..69 259 66.7 Plus
Dere\GG15129-PA 69 GG15129-PA 1..69 1..69 245 65.2 Plus
Dere\GG14261-PA 72 GG14261-PA 2..72 1..69 229 60.6 Plus
Dere\GG15126-PA 70 GG15126-PA 2..70 1..69 218 59.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Drsl1-PA 69 CG32274-PA 1..69 1..69 386 100 Plus
Drs-PA 70 CG10810-PA 2..70 1..69 278 66.7 Plus
Drsl5-PA 69 CG10812-PA 1..69 1..69 266 65.2 Plus
Drsl2-PA 70 CG32279-PA 2..70 1..69 249 60.9 Plus
Drsl6-PA 72 CG32268-PA 2..72 1..69 247 60.6 Plus
Drsl4-PA 71 CG32282-PA 3..71 2..69 190 50.7 Plus
Drsl3-PA 71 CG32283-PA 2..71 1..69 180 45.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14055-PA 69 GM14055-PA 1..69 1..69 335 91.3 Plus
Dsec\GM14569-PA 72 GM14569-PA 2..70 1..69 257 66.7 Plus
Dsec\GM14562-PA 69 GM14562-PA 1..69 1..69 237 63.8 Plus
Dsec\GM14560-PA 70 GM14560-PA 2..70 1..69 230 60.9 Plus
Dsec\GM14054-PA 72 GM14054-PA 2..72 1..69 180 59.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\dro1-PA 69 GD13331-PA 1..69 1..69 342 94.2 Plus
Dsim\Drs-PA 70 GD13760-PA 2..70 1..69 259 66.7 Plus
Dsim\dro5-PA 69 GD13754-PA 1..69 1..69 247 65.2 Plus
Dsim\dro6-PA 72 GD13330-PA 2..72 1..69 180 59.2 Plus
Dsim\dro4-PA 71 GD13753-PA 3..71 2..69 172 50.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20689-PA 69 GE20689-PA 1..69 1..69 290 76.8 Plus
Dyak\GE21361-PA 70 GE21361-PA 2..70 1..69 259 66.7 Plus
Dyak\GE21355-PA 69 GE21355-PA 1..69 1..69 244 65.2 Plus
Dyak\GE20688-PA 72 GE20688-PA 2..72 1..69 226 59.2 Plus
Dyak\GE21352-PA 70 GE21352-PA 2..70 1..69 220 58 Plus

RT02921.hyp Sequence

Translation from 1 to 209

> RT02921.hyp
MEIKFLIVLSAVLMIIFLGAEESHADCLSGRYRGSCAVWHRKKCVDICQR
EGRTSGHCSPSLKCWCEGC*

RT02921.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Drsl1-PA 69 CG32274-PA 1..69 1..69 386 100 Plus
Drs-PA 70 CG10810-PA 2..70 1..69 278 66.7 Plus
Drsl5-PA 69 CG10812-PA 1..69 1..69 266 65.2 Plus
Drsl2-PA 70 CG32279-PA 2..70 1..69 249 60.9 Plus
Drsl6-PA 72 CG32268-PA 2..72 1..69 247 60.6 Plus