Clone RT02937 Report

Search the DGRC for RT02937

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:29
Well:37
Vector:pCR2.1
Associated Gene/Transcriptyellow-k-RA
Protein status:RT02937.pep: gold
Sequenced Size:1056

Clone Sequence Records

RT02937.complete Sequence

1056 bp assembled on 2010-02-26

GenBank Submission: BT100075.3

> RT02937.complete
ATGGTCACACATGGTGTCCTCGGCTTGGGATTTCTCATTGTTGGTCTAAT
TCTGGCCACGGACGCCTGGCTGTTATCCGAATCTGGTTTAAACGAATCCA
GCTACAAAGTCCGTCATCTATCGATGCACTTTTCGCGAGTGTTTCTCAGC
GTAAATGTAGAAAGCAACGATGCGCCCACTTTGATCGAGGCGCAATGGCC
GGTTTCCTATTTTCCCATGCCCACTGTCGTCTTTCCCCACATCGATGTTC
ATTCCATGGGGGATCATGATGATTGCTCTCTGGTACAACAGGCACACTGG
TCCCAGGTGGATGCACTGAGTCGACTGTGGGTCATGGACATCGGATTTCC
CGGCAGCACGTGCTCACCCCGTTTGTTTGTCTTCGATCTGATGCGTAACA
ACGCGGAGCTATTGAGAATCGATTGTGGACACCATATAGGTGCTAATGAC
ACCCACTTTCTGACTGTCCAAATGGGACCCAAGAGTCCGGGATGCGAGCA
CGAGCGCCATATTTACTTCATCCTTGGAAAGGTACCAGAAATTCTAGCCT
ACGACATCCTGGAGCAGACGTGGCACCGCCTATCCTTGGAGAGCAATAAG
TACGAGAATATGAATCAATCGTTTCCCATCAAGCCAGTGGATTTCATCTT
CGGAATTCAAGGGGAACTCATACTCTCCGACCAGGATGGTGATCTATACA
GTACGGTGGACAGACTGGAAATTGAAGGCAAAAGCGAATTAGCAAGCAAA
CCAATTAACAATAGCATTAAACTCACACATTTGGGCAGTCTTCTGGGCAG
CAGTCGCAGCATGATCATCGACAATTTCGGAACATTGTACTATGTTATCC
CCAAATTCGGAGCTGTCGTACGATGTGCCAAACTAGCCAACATCACAGCC
GAGGGCAACGAAATCATATATATCACATCGAAGAACATTCAGCAGATTTT
CTTCACCTCCAATGATGCATTATGGGTCCTAAGTGATCGGGTCTTGAATG
CGAAGGACATGTGCTTTCCTAGCTTATAACACTTCTATAGTGTCACCTAA
ATTCGC

RT02937.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-RA 1029 yellow-k-RA 1..1029 1..1029 5145 100 Plus
CG7945-RC 3575 CG7945-RC 2554..3267 714..1 3570 100 Minus
CG7945.c 2502 CG7945.c 1481..2194 714..1 3570 100 Minus
CG7945-RC 3575 CG7945-RC 2299..2553 1031..777 1275 100 Minus
CG7945.c 2502 CG7945.c 1241..1480 1018..779 1200 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15510558..15511588 1..1031 5140 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15520620..15521650 1..1031 5155 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15513720..15514750 1..1031 5155 100 Plus
Blast to na_te.dros performed 2019-03-16 10:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 563..617 659..605 113 67.3 Minus

RT02937.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:41:24 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15510558..15511594 1..1041 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:15:17 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1029 1..1029 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:55:12 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1029 1..1029 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:03:03 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1029 1..1029 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:30 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1029 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:15:16 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1029 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:55:12 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1034 1..1034 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:03 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1034 1..1034 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:30 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1034 1..1034 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:24 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520620..15521656 1..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:24 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520620..15521656 1..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:24 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520620..15521656 1..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:03 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15513720..15514756 1..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:40 Download gff for RT02937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15513720..15514756 1..1041 99   Plus

RT02937.pep Sequence

Translation from 0 to 1028

> RT02937.pep
MVTHGVLGLGFLIVGLILATDAWLLSESGLNESSYKVRHLSMHFSRVFLS
VNVESNDAPTLIEAQWPVSYFPMPTVVFPHIDVHSMGDHDDCSLVQQAHW
SQVDALSRLWVMDIGFPGSTCSPRLFVFDLMRNNAELLRIDCGHHIGAND
THFLTVQMGPKSPGCEHERHIYFILGKVPEILAYDILEQTWHRLSLESNK
YENMNQSFPIKPVDFIFGIQGELILSDQDGDLYSTVDRLEIEGKSELASK
PINNSIKLTHLGSLLGSSRSMIIDNFGTLYYVIPKFGAVVRCAKLANITA
EGNEIIYITSKNIQQIFFTSNDALWVLSDRVLNAKDMCFPSL*

RT02937.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23705-PA 342 GF23705-PA 1..342 1..342 1415 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15905-PA 344 GG15905-PA 1..344 1..342 1712 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14545-PA 353 GH14545-PA 7..351 7..342 1166 65.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-PA 342 CG7463-PA 1..342 1..342 1800 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13116-PA 349 GI13116-PA 24..347 22..342 1162 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24856-PA 343 GL24856-PA 1..342 1..342 1274 67.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20372-PA 343 GA20372-PA 1..342 1..342 1273 67.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25535-PA 343 GM25535-PA 1..343 1..342 1768 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14550-PA 343 GD14550-PA 1..343 1..342 1780 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13864-PA 352 GJ13864-PA 12..352 6..342 1153 63.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10596-PA 340 GK10596-PA 12..339 12..342 1165 65.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23150-PA 341 GE23150-PA 1..341 1..341 1703 93 Plus
Dyak\GE22246-PA 230 GE22246-PA 1..230 112..341 1161 93 Plus

RT02937.hyp Sequence

Translation from 1 to 1028

> RT02937.hyp
MVTHGVLGLGFLIVGLILATDAWLLSESGLNESSYKVRHLSMHFSRVFLS
VNVESNDAPTLIEAQWPVSYFPMPTVVFPHIDVHSMGDHDDCSLVQQAHW
SQVDALSRLWVMDIGFPGSTCSPRLFVFDLMRNNAELLRIDCGHHIGAND
THFLTVQMGPKSPGCEHERHIYFILGKVPEILAYDILEQTWHRLSLESNK
YENMNQSFPIKPVDFIFGIQGELILSDQDGDLYSTVDRLEIEGKSELASK
PINNSIKLTHLGSLLGSSRSMIIDNFGTLYYVIPKFGAVVRCAKLANITA
EGNEIIYITSKNIQQIFFTSNDALWVLSDRVLNAKDMCFPSL*

RT02937.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-PA 342 CG7463-PA 1..342 1..342 1800 100 Plus