Clone RT03012 Report

Search the DGRC for RT03012

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:30
Well:12
Vector:pCR2.1
Associated Gene/TranscriptRab9Db-RA
Protein status:RT03012.pep: gold
Sequenced Size:597

Clone Sequence Records

RT03012.complete Sequence

597 bp assembled on 2009-10-30

GenBank Submission: BT100065.1

> RT03012.complete
ATGAGCCAATACGACAATCCGTTTAAGATTATCATCCTGGGTGACAGTGG
CGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCGGATAACCAATTCACCG
AAAGACACCGGGTCACGGTGGGCATGGATAGAAGGGAGTGCAGCGTGGAG
TTTGCCGATTGGAGGATGGGGAGGATGCTGCAAGTCTGGGACACCTCCGA
CGACGAGCGCTTCAAATTGCTGAAGGCGACCCAATGTCGCAGTGCCCATG
GCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTTCCAAAACATC
GATGGCTGGATGAAGGAGATACGGCGCCTGTGTCCGGATAAGGTAACCGT
CCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGCCAGGTGAGCA
TGGCGCAGGGGTTCAACTATGCCCATCGTCAGTCAATCTGCTTTGAAGAG
GTTTCCGCCAAGAGTGGAAGGAATGTATATGACATATTTAGCTCGTTGGC
AATGGACATATATACATATCGTCGTGTACATTACAACCCGTTCAGCTTGA
CATCTTGGCAGGAAGAGGAGGACGCTGAAGAGTCACTGGATTAACAC

RT03012.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-RA 871 Rab9Db-RA 68..662 1..595 2960 99.8 Plus
nc_22944.a 799 nc_22944.a 210..799 595..6 2845 98.8 Minus
Rab9Fa-RA 897 Rab9Fa-RA 94..688 1..595 2825 98.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10513930..10514524 595..1 2960 99.8 Minus
chrX 22417052 chrX 10841683..10842277 595..1 2825 98.3 Minus
chrX 22417052 chrX 10480548..10481142 1..595 2810 98.2 Plus
chrX 22417052 chrX 10552531..10553125 595..1 2795 98 Minus
chrX 22417052 chrX 10308973..10309561 1..595 1670 86.5 Plus
chrX 22417052 chrX 10843252..10843733 488..1 1115 82.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10622564..10623158 595..1 2960 99.8 Minus
X 23542271 X 10950369..10950963 595..1 2825 98.3 Minus
X 23542271 X 10589182..10589776 1..595 2810 98.2 Plus
X 23542271 X 10661164..10661758 595..1 2795 98 Minus
X 23542271 X 10417496..10418084 1..595 1670 86.5 Plus
X 23542271 X 10951938..10952419 488..1 1115 82.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10630662..10631256 595..1 2960 99.8 Minus
X 23527363 X 10958467..10959061 595..1 2825 98.3 Minus
X 23527363 X 10597280..10597874 1..595 2810 98.1 Plus
X 23527363 X 10669262..10669856 595..1 2795 97.9 Minus
X 23527363 X 10425761..10426182 174..595 1490 90.8 Plus
X 23527363 X 10960036..10960349 488..175 775 83.1 Minus
X 23527363 X 10960361..10960517 157..1 455 85.9 Minus
X 23527363 X 10425594..10425743 1..150 330 81.3 Plus
Blast to na_te.dros performed on 2019-03-16 16:25:53 has no hits.

RT03012.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:26:52 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10513929..10514524 1..597 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-30 16:18:27 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 1..594 1..594 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:29 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 1..594 1..594 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:39 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 1..594 1..594 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:27:32 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 1..594 1..594 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-30 16:18:27 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 12..605 1..594 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:29 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..663 1..597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:39 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..663 1..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:27:32 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..663 1..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:52 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
X 10622563..10623158 1..597 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:52 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
X 10622563..10623158 1..597 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:52 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
X 10622563..10623158 1..597 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:39 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10516596..10517191 1..597 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:08 Download gff for RT03012.complete
Subject Subject Range Query Range Percent Splice Strand
X 10630661..10631256 1..597 99   Minus

RT03012.pep Sequence

Translation from 0 to 593

> RT03012.pep
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAEESLD*

RT03012.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19340-PA 237 GF19340-PA 1..178 1..180 455 49.4 Plus
Dana\GF17263-PA 205 GF17263-PA 7..172 3..170 361 42.9 Plus
Dana\GF10843-PA 207 GF10843-PA 5..180 4..179 343 41.6 Plus
Dana\GF20451-PA 200 GF20451-PA 5..184 4..192 339 38.1 Plus
Dana\GF20241-PA 204 GF20241-PA 6..170 4..170 335 42.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18360-PA 218 GG18360-PA 1..191 1..194 533 56.2 Plus
Dere\GG14761-PA 205 GG14761-PA 7..172 3..170 361 42.9 Plus
Dere\GG13365-PA 207 GG13365-PA 5..180 4..179 343 41.6 Plus
Dere\GG18010-PA 201 GG18010-PA 5..172 4..174 332 39.2 Plus
Dere\GG19277-PA 204 GG19277-PA 6..170 4..170 328 42.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18937-PA 205 GH18937-PA 7..172 3..170 360 42.9 Plus
Dgri\GH24326-PA 201 GH24326-PA 4..172 3..174 348 40.7 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..180 4..179 343 41.6 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..183 4..180 333 41.7 Plus
Dgri\GH12019-PA 202 GH12019-PA 6..167 7..171 303 38.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1047 100 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..197 1018 97 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1017 97.5 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1015 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 694 72.2 Plus
Rab9Fb-PA 214 CG32670-PA 1..194 1..197 577 60.9 Plus
Rab1-PA 205 CG3320-PA 7..172 3..170 352 42.3 Plus
Rab35-PB 201 CG9575-PB 5..172 4..174 339 39.2 Plus
Rab35-PD 201 CG9575-PD 5..172 4..174 339 39.2 Plus
Rab35-PA 201 CG9575-PA 5..172 4..174 339 39.2 Plus
Rab8-PC 207 CG8287-PC 5..169 4..170 334 42.5 Plus
Rab8-PA 207 CG8287-PA 5..169 4..170 334 42.5 Plus
Rab10-PA 204 CG17060-PA 6..167 4..167 324 42.7 Plus
Rab19-PB 219 CG7062-PP3-RB 18..184 4..170 303 37.3 Plus
Rab19-PA 219 CG7062-PA 18..184 4..170 303 37.3 Plus
Rab2-PB 213 CG3269-PB 7..168 8..171 301 36 Plus
Rab2-PA 213 CG3269-PA 7..168 8..171 301 36 Plus
Rab26-PE 410 CG34410-PE 208..375 3..170 297 38.8 Plus
Rab26-PD 410 CG34410-PD 208..375 3..170 297 38.8 Plus
Rab26-PC 410 CG34410-PC 208..375 3..170 297 38.8 Plus
Rab11-PA 214 CG5771-PA 7..173 3..171 296 35.5 Plus
Rab11-PB 214 CG5771-PB 7..173 3..171 296 35.5 Plus
Rab14-PD 215 CG4212-PD 8..173 4..171 291 35.7 Plus
Rab14-PA 215 CG4212-PA 8..173 4..171 291 35.7 Plus
Rab30-PD 223 CG9100-PD 1..167 1..170 291 36.5 Plus
Rab30-PC 223 CG9100-PC 1..167 1..170 291 36.5 Plus
Rab30-PB 223 CG9100-PB 1..167 1..170 291 36.5 Plus
Rab30-PA 223 CG9100-PA 1..167 1..170 291 36.5 Plus
Rab14-PB 239 CG4212-PB 32..197 4..171 291 35.7 Plus
Rab35-PC 190 CG9575-PC 8..161 18..174 289 37.6 Plus
Rab3-PB 220 CG7576-PB 18..178 4..166 287 37.4 Plus
Rab3-PA 220 CG7576-PA 18..178 4..166 287 37.4 Plus
Rab4-PA 213 CG4921-PA 5..162 4..163 278 36.9 Plus
Rab4-PB 213 CG4921-PB 5..162 4..163 278 36.9 Plus
RabX4-PA 213 CG31118-PA 9..174 8..174 276 35.7 Plus
Rab39-PB 218 CG12156-PB 6..176 4..171 274 37.2 Plus
Rab39-PA 218 CG12156-PA 6..176 4..171 274 37.2 Plus
Rab6-PB 208 CG6601-PB 6..170 4..167 267 35.9 Plus
Rab6-PA 208 CG6601-PA 6..170 4..167 267 35.9 Plus
Rab5-PI 219 CG3664-PI 30..187 8..167 266 35.6 Plus
Rab5-PH 219 CG3664-PH 30..187 8..167 266 35.6 Plus
Rab5-PG 219 CG3664-PG 30..187 8..167 266 35.6 Plus
Rab5-PE 219 CG3664-PE 30..187 8..167 266 35.6 Plus
Rab5-PC 219 CG3664-PC 30..187 8..167 266 35.6 Plus
Rab5-PD 219 CG3664-PD 30..187 8..167 266 35.6 Plus
Rab5-PF 219 CG3664-PF 30..187 8..167 266 35.6 Plus
Rab5-PB 219 CG3664-PB 30..187 8..167 266 35.6 Plus
Rab5-PA 219 CG3664-PA 30..187 8..167 266 35.6 Plus
Rab18-PA 197 CG3129-PA 3..165 5..170 261 34.9 Plus
Rab21-PC 222 CG17515-PC 14..171 8..166 260 34 Plus
Rab21-PD 222 CG17515-PD 14..171 8..166 260 34 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10837-PA 205 GI10837-PA 7..172 3..170 370 43.5 Plus
Dmoj\GI14806-PA 201 GI14806-PA 4..172 3..174 342 40.1 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..180 4..179 342 41.6 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..183 4..180 338 42.2 Plus
Dmoj\GI19298-PA 213 GI19298-PA 3..168 4..171 305 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27164-PA 205 GL27164-PA 7..172 3..170 361 42.9 Plus
Dper\GL15675-PA 207 GL15675-PA 5..180 4..179 341 41.6 Plus
Dper\GL14977-PA 211 GL14977-PA 3..189 8..188 336 37.7 Plus
Dper\GL12921-PA 200 GL12921-PA 5..172 4..174 325 38.6 Plus
Dper\GL22545-PA 219 GL22545-PA 18..184 4..170 309 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17362-PA 205 GA17362-PA 7..172 3..170 361 42.9 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..180 4..179 341 41.6 Plus
Dpse\GA22382-PA 205 GA22382-PA 3..164 8..171 339 41 Plus
Dpse\GA21885-PA 200 GA21885-PA 5..172 4..174 331 39.2 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..183 4..180 331 40.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11275-PA 215 GM11275-PA 1..195 1..197 551 58.6 Plus
Dsec\GM11294-PA 206 GM11294-PA 1..169 1..171 478 53.2 Plus
Dsec\GM11425-PA 169 GM11425-PA 1..161 1..163 469 54.6 Plus
Dsec\GM15089-PA 205 GM15089-PA 7..172 3..170 361 42.9 Plus
Dsec\GM15893-PA 207 GM15893-PA 5..180 4..179 343 41.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11278-PA 215 GD11278-PA 1..195 1..197 554 58.5 Plus
Dsim\GD16021-PA 206 GD16021-PA 1..169 1..171 492 55.6 Plus
Dsim\GD16978-PA 207 GD16978-PA 1..169 1..171 486 54.4 Plus
Dsim\GD19996-PA 205 GD19996-PA 7..172 3..170 361 42.9 Plus
Dsim\GD12244-PA 207 GD12244-PA 5..180 4..179 343 41.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14443-PA 205 GJ14443-PA 7..172 3..170 370 43.5 Plus
Dvir\GJ14874-PA 202 GJ14874-PA 7..168 8..171 359 42.7 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..180 4..179 342 41.6 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 4..172 3..174 336 39.5 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..183 4..180 333 41.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20101-PA 216 GK20101-PA 10..171 8..171 366 45.1 Plus
Dwil\GK12772-PA 205 GK12772-PA 7..172 3..170 361 42.9 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..180 4..179 342 41.6 Plus
Dwil\GK16335-PA 200 GK16335-PA 5..172 4..174 336 39.8 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..183 4..180 332 41.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17848-PA 219 GE17848-PA 1..191 1..194 525 55.2 Plus
Dyak\Rab1-PA 205 GE25003-PA 7..172 3..170 361 42.9 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..180 4..179 343 41.6 Plus
Dyak\GE17342-PA 201 GE17342-PA 5..172 4..174 332 39.2 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..170 4..170 328 42.5 Plus

RT03012.hyp Sequence

Translation from 1 to 593

> RT03012.hyp
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAEESLD*

RT03012.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1047 100 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..197 1018 97 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1017 97.5 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1015 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 694 72.2 Plus