RT03039.complete Sequence
453 bp assembled on 2010-02-26
GenBank Submission: BT100079.3
> RT03039.complete
ATGGTTTGGATACTGCGACTATTGTCTATCCTTTGCGCCAGCGTTTTAGC
TTATCAGAAAGATGACAGTGCCAATAGCATTATACTTAACGATGGAGCTA
TAACGGTAAACACCTCCACATCGGGACTTACGGAAGCGGAGGGAAATACG
TATGTACCAGGACCTGGATTCTTTCAAGAGACTTTCCTTGGCAAAAAAAC
GATTGGTTCATCTCCTCGATTGCCAGATCTAGGAAATAATATCGTCGTTA
TGAGCGAAAGTAAGCAATTGAAGGCCGGTGAAAAAAACATTGTTAACTCC
AAAGTGCAAACGGTTACAAGAAAGCCCAAAATGTCAAAAGCAGATATATT
TCATGGTATAAAATTATTTCAAGGACCTATTCATGAGCAGTTTGAAAACG
ATCTCCATGACCATCATCACGATTAACACTTCTATAGTGTCACCTAAATT
CGC
RT03039.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp65A-RA | 554 | Sfp65A-RA | 35..460 | 1..426 | 2130 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 6342800..6343225 | 1..426 | 2085 | 99.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6350310..6350735 | 1..426 | 2130 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 6343410..6343835 | 1..426 | 2130 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 03:54:56 has no hits.
RT03039.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:55:49 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 6342800..6343231 | 1..432 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:15:22 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 1..426 | 1..426 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:39 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 1..426 | 1..426 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:06 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 1..426 | 1..426 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:45 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 1..426 | 1..426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:15:22 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 35..466 | 1..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:39 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 35..466 | 1..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:06 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 35..466 | 1..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:45 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp65A-RA | 35..466 | 1..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:49 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6350310..6350741 | 1..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:49 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6350310..6350741 | 1..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:55:49 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6350310..6350741 | 1..432 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:06 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6343410..6343841 | 1..432 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:07 Download gff for
RT03039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6343410..6343841 | 1..432 | 99 | | Plus |
RT03039.pep Sequence
Translation from 0 to 425
> RT03039.pep
MVWILRLLSILCASVLAYQKDDSANSIILNDGAITVNTSTSGLTEAEGNT
YVPGPGFFQETFLGKKTIGSSPRLPDLGNNIVVMSESKQLKAGEKNIVNS
KVQTVTRKPKMSKADIFHGIKLFQGPIHEQFENDLHDHHHD*
RT03039.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp65A-PA | 141 | CG42479-PA | 1..141 | 1..141 | 731 | 100 | Plus |
RT03039.hyp Sequence
Translation from 1 to 425
> RT03039.hyp
MVWILRLLSILCASVLAYQKDDSANSIILNDGAITVNTSTSGLTEAEGNT
YVPGPGFFQETFLGKKTIGSSPRLPDLGNNIVVMSESKQLKAGEKNIVNS
KVQTVTRKPKMSKADIFHGIKLFQGPIHEQFENDLHDHHHD*
RT03039.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp65A-PA | 141 | CG42479-PA | 1..141 | 1..141 | 731 | 100 | Plus |