Clone RT03045 Report

Search the DGRC for RT03045

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:30
Well:45
Vector:pCR2.1
Associated Gene/TranscriptCyp317a1-RA
Protein status:RT03045.pep: gold
Sequenced Size:1561

Clone Sequence Records

RT03045.complete Sequence

1561 bp assembled on 2009-12-09

GenBank Submission: BT100080.1

> RT03045.complete
ATGTGGATCATTTTCCTCATCATCGGATTGCTGGTGCTCGGGCTGCTGGT
TCTGCTAATTATTGCGGCGCGGTATCAGCGAGATTATTGGCGCTATCTGG
ACATTCCACACGAGAGACCCAAAAAGCTATGGCCTATCATTAGGCAAATA
ATGACGCAGACATTGAGTACGGAGGCTATGAAGGCGGAGCACTACTCGGC
CATATACAAGAAGTTCAAGGGAAGCGGTCCCTTCTGCGGATTCTACGCCC
TGTTGCAGCCACGCGCATTGATCCTCGATCGGGAGCTGATTAGGCAAATA
ATGATCAAGGACTTTTGGAACTTTAATGATCGAGGATTGTATTGCAATCA
AAAGTCGGATCCTTTGTCGGGTGATCTGTACGCTTTGCGGGGAGAGAGCT
GGAAGGAGATGCGTCAGAAATTGGATCCAAGTCTCGAAGGTGATCGCATG
TCCTTGCTGTATGACTGCCTGTACGAGGAGGCGGAACAGCTTCTCTTGAC
AGTCAATAGCACCCTAATGAGCCAGCCCCATTCCACCGTTCACATACAAA
AGATTATGAGGCGTTATGTGCTGTCTTCGTTGGCCAAATGCGTTTTTGGT
TTGAATGCCGAACAGAGGAAAACGTATCCTCTGGAGGATTTTGAGCAGAT
GACCGAGCTGGCCTTGAATAGCCACAAACATGGCTACCTAATGAACCTGA
TGATGATCCGGTTCCCCAACTTTTGTCGAATGTTGCGCATGCGTCGCACG
CCCAAACAGGCGGAGGAGTATTTTATTAAGCTCCTTACGAGTATTGTGGA
ACAACGAGAGACGTCCGGAAAGCCTCAGAAGGACTACTTACAACTTTTGA
TCGACGTCAAGGCACTGGAGTTTATTACCCACCAGTATGAAGCGGATAAG
GAACTAGGTGCCCATCTGCAGAACGAGTTGGCCGCCCATGCAGTTGTCTT
CTTGAAGGCGGGCTACGAGCAAACGGCCAACACTCTATCATATGTACTCT
ATGAGCTAGCATTGCATCCAGAATTGCAAGTACGTGTGCGGGAGGAGGTC
AAGAAGGCCATCGAGCGACATGATGGTCACATAACACATGAGGGCATTAA
GTCGCTTAGTTTCATGGGTCAGGTGATCAACGAAACACTACGAATGCATC
CCATAACACCCTACATCCTACGTCGCACCTTAAATGACTACGCAGTTCCG
GATCATCCCAAGTACATTCTGGTCAAGGAGCTGTTCCTCATCATACCCAC
GCACGCTATCCATCACGATCCGGATATCTATCCGGATCCCGAGGAATTCA
AGCCGGATCGTTGGAGCGGACCACGGGATTCGCTGCAGGAGCAGGGCACT
TGGTTTGGATTCGGCGTGGGTGCTCGCAGTTGCATTGGTATACAATTCGC
ACAGCTGCAACTGCGATTGGCATTGGCTCTGCTTCTATCCGAGTATGAAT
TCTCCTTGAATACCAGGAAACCACTGATTAACCTGGAGGATGGTATAGCA
CTAACCCTGATGCCATTGGGTGTCATAGAACCCGGAAACGAGGAGAGGGC
GGTATAACACT

RT03045.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp317a1-RA 1557 Cyp317a1-RA 1..1557 1..1557 7785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10786820..10788376 1..1557 7710 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14899495..14901051 1..1557 7785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14900694..14902250 1..1557 7785 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:12:03 has no hits.

RT03045.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:13:01 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10786820..10788379 1..1561 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-12-09 09:35:48 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:42 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:55:17 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:54 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-09 09:35:47 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:42 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:55:17 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 304..1863 1..1561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:54 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp317a1-RA 304..1863 1..1561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:13:01 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14899495..14901054 1..1561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:13:01 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14899495..14901054 1..1561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:13:01 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14899495..14901054 1..1561 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:55:17 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10787000..10788559 1..1561 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:17 Download gff for RT03045.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14900694..14902253 1..1561 99   Plus

RT03045.pep Sequence

Translation from 0 to 1556

> RT03045.pep
MWIIFLIIGLLVLGLLVLLIIAARYQRDYWRYLDIPHERPKKLWPIIRQI
MTQTLSTEAMKAEHYSAIYKKFKGSGPFCGFYALLQPRALILDRELIRQI
MIKDFWNFNDRGLYCNQKSDPLSGDLYALRGESWKEMRQKLDPSLEGDRM
SLLYDCLYEEAEQLLLTVNSTLMSQPHSTVHIQKIMRRYVLSSLAKCVFG
LNAEQRKTYPLEDFEQMTELALNSHKHGYLMNLMMIRFPNFCRMLRMRRT
PKQAEEYFIKLLTSIVEQRETSGKPQKDYLQLLIDVKALEFITHQYEADK
ELGAHLQNELAAHAVVFLKAGYEQTANTLSYVLYELALHPELQVRVREEV
KKAIERHDGHITHEGIKSLSFMGQVINETLRMHPITPYILRRTLNDYAVP
DHPKYILVKELFLIIPTHAIHHDPDIYPDPEEFKPDRWSGPRDSLQEQGT
WFGFGVGARSCIGIQFAQLQLRLALALLLSEYEFSLNTRKPLINLEDGIA
LTLMPLGVIEPGNEERAV*

RT03045.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12304-PA 518 GF12304-PA 1..518 1..518 2302 85.5 Plus
Dana\GF13788-PA 506 GF13788-PA 1..476 4..486 839 33.8 Plus
Dana\GF12636-PA 504 GF12636-PA 11..501 12..503 832 33.5 Plus
Dana\GF12301-PA 500 GF12301-PA 7..495 11..503 773 31.1 Plus
Dana\GF12635-PA 508 GF12635-PA 1..503 1..503 773 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20490-PA 518 GG20490-PA 1..518 1..518 2681 96.3 Plus
Dere\GG10797-PA 506 GG10797-PA 1..476 4..486 812 33 Plus
Dere\GG22387-PA 504 GG22387-PA 3..501 1..503 790 32.6 Plus
Dere\GG11553-PA 462 GG11553-PA 18..459 69..503 758 33.1 Plus
Dere\GG22385-PA 510 GG22385-PA 63..503 69..503 756 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21103-PA 521 GH21103-PA 4..521 1..518 1975 73.7 Plus
Dgri\GH20135-PA 506 GH20135-PA 1..499 3..509 851 33.3 Plus
Dgri\GH20136-PA 464 GH20136-PA 18..457 69..509 846 35.8 Plus
Dgri\GH20137-PA 464 GH20137-PA 18..457 69..509 842 35.6 Plus
Dgri\GH13944-PA 464 GH13944-PA 18..457 69..509 842 35.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp317a1-PC 518 CG17453-PC 1..518 1..518 2707 100 Plus
Cyp317a1-PB 518 CG17453-PB 1..518 1..518 2707 100 Plus
Cyp317a1-PA 518 CG17453-PA 1..518 1..518 2707 100 Plus
Cyp6a2-PA 506 CG9438-PA 1..476 4..486 807 34.1 Plus
Cyp6a9-PB 504 CG10246-PB 3..474 4..486 781 34 Plus
Cyp6a17-PB 501 CG10241-PB 2..499 6..506 767 31.3 Plus
Cyp6a17-PA 501 CG10241-PA 2..499 6..506 767 31.3 Plus
Cyp6a21-PA 504 CG10247-PA 11..474 12..486 763 33.1 Plus
Cyp6a8-PA 506 CG10248-PA 6..501 7..501 757 32.8 Plus
Cyp6a18-PB 507 CG13977-PB 10..475 11..485 744 32.6 Plus
Cyp6a18-PA 507 CG13977-PA 10..475 11..485 744 32.6 Plus
Cyp6a23-PA 502 CG10242-PA 3..500 6..506 742 30.9 Plus
Cyp6a20-PB 501 CG10245-PB 6..480 10..496 729 29.6 Plus
Cyp6a22-PC 499 CG10240-PC 59..467 68..489 718 34 Plus
Cyp6a22-PB 499 CG10240-PB 59..467 68..489 718 34 Plus
Cyp6a22-PA 499 CG10240-PA 59..467 68..489 718 34 Plus
Cyp6a14-PE 509 CG8687-PE 10..497 11..502 715 32.2 Plus
Cyp6a14-PC 509 CG8687-PC 10..497 11..502 715 32.2 Plus
Cyp6a19-PA 503 CG10243-PA 7..476 11..492 677 30.5 Plus
Cyp6a13-PA 493 CG2397-PA 2..487 6..503 668 30.1 Plus
Cyp6a16-PC 500 CG7249-PC 6..495 10..506 599 29.8 Plus
Cyp6a16-PB 500 CG7249-PB 6..495 10..506 599 29.8 Plus
Cyp6d4-PA 515 CG12800-PA 6..497 10..501 580 28 Plus
Cyp6u1-PC 488 CG3567-PC 9..474 10..505 572 30.4 Plus
Cyp6u1-PB 488 CG3567-PB 9..474 10..505 572 30.4 Plus
Cyp6u1-PA 488 CG3567-PA 9..474 10..505 572 30.4 Plus
Cyp6d5-PA 508 CG3050-PA 1..496 7..505 557 27.7 Plus
Cyp6g2-PA 519 CG8859-PA 3..490 6..491 554 28.3 Plus
Cyp6d2-PA 512 CG4373-PA 1..486 1..490 508 27.2 Plus
Cyp6v1-PC 520 CG1829-PC 9..493 10..489 484 26.1 Plus
Cyp6v1-PB 520 CG1829-PB 9..493 10..489 484 26.1 Plus
Cyp6v1-PA 520 CG1829-PA 9..493 10..489 484 26.1 Plus
Cyp6g1-PB 524 CG8453-PB 9..479 11..482 478 28.2 Plus
Cyp6g1-PA 524 CG8453-PA 9..479 11..482 478 28.2 Plus
Cyp6a19-PB 367 CG10243-PB 7..366 11..381 464 29.1 Plus
Cyp28a5-PA 505 CG8864-PA 1..481 1..490 458 25.2 Plus
Cyp6w1-PB 514 CG8345-PB 4..473 10..484 457 27.3 Plus
Cyp6w1-PA 514 CG8345-PA 4..473 10..484 457 27.3 Plus
Cyp28d1-PA 502 CG10833-PA 10..477 11..490 423 24.3 Plus
Cyp309a2-PA 538 CG18559-PA 34..505 4..483 421 26.4 Plus
Cyp9h1-PA 518 CG17577-PA 10..497 11..494 413 27 Plus
Cyp9f2-PA 516 CG11466-PA 66..494 74..496 397 24.7 Plus
Cyp9c1-PA 522 CG3616-PA 1..508 3..505 392 23.7 Plus
Cyp28d2-PA 501 CG6081-PA 9..474 10..489 375 24 Plus
Cyp309a1-PC 506 CG9964-PC 65..483 68..492 373 25.2 Plus
Cyp309a1-PB 506 CG9964-PB 65..483 68..492 373 25.2 Plus
Cyp308a1-PA 490 CG6585-PA 1..452 7..482 368 27 Plus
Cyp28c1-PB 505 CG1895-PB 1..472 7..489 365 23.6 Plus
Cyp28c1-PA 505 CG1895-PA 1..472 7..489 365 23.6 Plus
Cyp9b2-PA 505 CG4486-PA 1..477 1..489 361 23.1 Plus
Cyp6t1-PA 529 CG1644-PA 4..500 3..489 357 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18705-PA 521 GI18705-PA 4..521 1..518 2001 73.4 Plus
Dmoj\GI20228-PA 506 GI20228-PA 2..499 6..509 843 32.9 Plus
Dmoj\GI20230-PA 506 GI20230-PA 1..499 3..509 838 32.9 Plus
Dmoj\GI20229-PA 506 GI20229-PA 1..499 4..509 836 33.7 Plus
Dmoj\GI20894-PA 504 GI20894-PA 5..501 6..503 828 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10376-PA 521 GL10376-PA 4..521 1..518 2231 82 Plus
Dper\GL10973-PA 506 GL10973-PA 1..476 3..486 843 34.2 Plus
Dper\GL11710-PA 506 GL11710-PA 28..476 27..486 753 33.9 Plus
Dper\GL10373-PA 500 GL10373-PA 3..495 6..503 739 29.9 Plus
Dper\GL10374-PA 500 GL10374-PA 3..495 6..503 734 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14516-PA 521 GA14516-PA 4..521 1..518 2234 82.2 Plus
Dpse\GA21788-PA 506 GA21788-PA 1..476 3..486 843 34.2 Plus
Dpse\GA10190-PA 504 GA10190-PA 1..480 1..491 779 32.5 Plus
Dpse\GA10189-PA 506 GA10189-PA 28..476 27..486 750 33.9 Plus
Dpse\GA24954-PA 500 GA24954-PA 3..495 6..503 739 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21582-PA 518 GM21582-PA 1..518 1..518 2745 99 Plus
Dsec\GM20849-PA 506 GM20849-PA 1..492 4..509 841 33.2 Plus
Dsec\GM20167-PA 519 GM20167-PA 23..516 11..503 764 31.9 Plus
Dsec\GM21578-PA 501 GM21578-PA 13..500 18..507 760 31 Plus
Dsec\GM21579-PA 502 GM21579-PA 7..500 11..506 759 31 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11088-PA 499 GD11088-PA 1..499 1..518 2618 95.6 Plus
Dsim\Cyp6a26-PA 506 GD10300-PA 1..492 4..509 852 33.8 Plus
Dsim\GD25647-PA 504 GD25647-PA 28..501 29..503 787 33.6 Plus
Dsim\GD11083-PA 501 GD11083-PA 2..500 6..507 781 31.2 Plus
Dsim\GD21336-PA 507 GD21336-PA 10..481 11..491 780 32.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21723-PA 521 GJ21723-PA 4..521 1..518 1987 74.1 Plus
Dvir\GJ20178-PA 508 GJ20178-PA 1..499 3..509 869 33.3 Plus
Dvir\GJ20179-PA 507 GJ20179-PA 2..500 3..509 856 34.1 Plus
Dvir\GJ21721-PA 500 GJ21721-PA 1..495 1..503 767 30.2 Plus
Dvir\GJ20624-PA 504 GJ20624-PA 11..474 12..486 753 32.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21517-PA 521 GK21517-PA 4..521 1..518 2151 77.6 Plus
Dwil\GK22151-PA 507 GK22151-PA 1..485 1..492 822 32.6 Plus
Dwil\GK21807-PA 503 GK21807-PA 1..492 1..503 803 34.2 Plus
Dwil\GK21806-PA 509 GK21806-PA 28..481 29..491 794 34.7 Plus
Dwil\GK21808-PA 502 GK21808-PA 1..478 1..492 793 32.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13622-PA 518 GE13622-PA 1..518 1..518 2696 96.5 Plus
Dyak\GE24465-PA 506 GE24465-PA 1..476 4..486 832 33.4 Plus
Dyak\GE12276-PA 504 GE12276-PA 3..483 1..493 790 33.3 Plus
Dyak\GE12274-PA 506 GE12274-PA 63..503 69..503 766 34.3 Plus
Dyak\GE23738-PA 507 GE23738-PA 10..481 11..491 762 32.2 Plus

RT03045.hyp Sequence

Translation from 1 to 1556

> RT03045.hyp
MWIIFLIIGLLVLGLLVLLIIAARYQRDYWRYLDIPHERPKKLWPIIRQI
MTQTLSTEAMKAEHYSAIYKKFKGSGPFCGFYALLQPRALILDRELIRQI
MIKDFWNFNDRGLYCNQKSDPLSGDLYALRGESWKEMRQKLDPSLEGDRM
SLLYDCLYEEAEQLLLTVNSTLMSQPHSTVHIQKIMRRYVLSSLAKCVFG
LNAEQRKTYPLEDFEQMTELALNSHKHGYLMNLMMIRFPNFCRMLRMRRT
PKQAEEYFIKLLTSIVEQRETSGKPQKDYLQLLIDVKALEFITHQYEADK
ELGAHLQNELAAHAVVFLKAGYEQTANTLSYVLYELALHPELQVRVREEV
KKAIERHDGHITHEGIKSLSFMGQVINETLRMHPITPYILRRTLNDYAVP
DHPKYILVKELFLIIPTHAIHHDPDIYPDPEEFKPDRWSGPRDSLQEQGT
WFGFGVGARSCIGIQFAQLQLRLALALLLSEYEFSLNTRKPLINLEDGIA
LTLMPLGVIEPGNEERAV*

RT03045.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp317a1-PC 518 CG17453-PC 1..518 1..518 2707 100 Plus
Cyp317a1-PB 518 CG17453-PB 1..518 1..518 2707 100 Plus
Cyp317a1-PA 518 CG17453-PA 1..518 1..518 2707 100 Plus
Cyp6a2-PA 506 CG9438-PA 1..476 4..486 807 34.1 Plus
Cyp6a9-PB 504 CG10246-PB 3..474 4..486 781 34 Plus