Clone RT03126 Report

Search the DGRC for RT03126

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:31
Well:26
Vector:pCR2.1
Associated Gene/TranscriptGr94a-RA
Protein status:RT03126.pep: gold
Sequenced Size:1242

Clone Sequence Records

RT03126.complete Sequence

1242 bp assembled on 2010-02-26

GenBank Submission: BT100087.3

> RT03126.complete
ATGGACTTCACCAGCGACTACGCGCATCGGCGTATGGTGAAATTTCTGAC
GATCATACTGATAGGCTTTATGACCGTCTTCGGACTCCTGGCCAATCGAT
ATCGGGCGGGCCGTCGTGAAAGATTCCGCTTCTCAAAGGCAAATCTGGCC
TTTGCTTCGCTGTGGGCAATTGCATTCAGCTTGGTTTACGGGCGGCAAAT
CTACAAGGAGTACCAGGAGGGTCAGATCAACCTGAAGGACGCCACCACTC
TGTACAGCTATATGAACATTACGGTGGCTGTTATTAACTATGTGTCGCAA
ATGATAATCAGTGACCATGTGGCCAAGGTGTTGAGCAAAGTGCCCTTCTT
TGATACCCTAAAAGAATTCCGTCTGGACAGCAGGTCGCTGTACATATCCA
TCGTTTTGGCTCTGGTCAAGACCGTGGCTTTTCCTCTAACAATTGAAGTG
GCTTTCATACTGCAACAGAGGCGGCAGCATCCCGAGATGAGCTTGATCTG
GACCTTGTACCGGCTGTTTCCCTTAATTATTTCGAATTTTCTCAATAACT
GCTACTTTGGCGCAATGGTGGTGGTGAAGGAGATTCTGTACGCTCTGAAC
AGACGGCTGGAAGCGCAGCTGCAGGAGGTGAATCTGCTGCAGAGGAAGGA
CCAGCTAAAGTTGTACACTAAATACTACCGCATGCAGCGATTTTGCGCCT
TGGCGGATGAACTCGACCAGCTGGCGTATCGCTATAGGTTGATATATGTG
CATTCGGGAAAGTATCTGACCCCAATGTCCTTGTCCATGATTCTGTCGCT
CATATGCCACCTGCTCGGAATAACGGTGGGTTTCTACAGTCTGTACTATG
CCATAGCGGACACCTTAATCATGGGCAAGCCGTACGATGGTCTTGGATCG
CTGATCAATCTGGTTTTCCTCTCCATCTCGCTGGCGGAGATCACATTGCT
CACGCATTTGTGCAACCACCTATTGGTGGCCACCCGAAGATCGGCAGTCA
TTCTCCAGGAGATGAATCTCCAGCATGCGGACAGCCGCTACCGTCAGGCA
GTCCACGGCTTTACTCTGCTGGTCACGGTGACCAAGTACCAAATTAAACC
CTTGGGCTTGTACGAGCTGGACATGCGACTGATCAGCAATGTCTTCTCGG
CGGTGGCCAGCTTCCTGCTGATCCTCGTGCAGGCCGATCTGTCCCAGCGC
TTCAAGATGCAATAGCACTTCTATAGTGTCACCTAAATTCGC

RT03126.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-RA 1215 Gr94a-RA 1..1215 1..1215 6075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18875098..18876313 1..1216 5960 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23051689..23052904 1..1216 6080 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22792520..22793735 1..1216 6080 100 Plus
Blast to na_te.dros performed on 2019-03-17 00:07:44 has no hits.

RT03126.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:08:24 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18875098..18876321 1..1224 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:15:57 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:55:22 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:58:36 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:13:15 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:15:56 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:55:22 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:36 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:15 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 1..1215 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:24 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23051689..23052912 1..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:24 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23051689..23052912 1..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:24 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23051689..23052912 1..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:36 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18877411..18878634 1..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:52 Download gff for RT03126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22792520..22793743 1..1224 99   Plus

RT03126.pep Sequence

Translation from 0 to 1214

> RT03126.pep
MDFTSDYAHRRMVKFLTIILIGFMTVFGLLANRYRAGRRERFRFSKANLA
FASLWAIAFSLVYGRQIYKEYQEGQINLKDATTLYSYMNITVAVINYVSQ
MIISDHVAKVLSKVPFFDTLKEFRLDSRSLYISIVLALVKTVAFPLTIEV
AFILQQRRQHPEMSLIWTLYRLFPLIISNFLNNCYFGAMVVVKEILYALN
RRLEAQLQEVNLLQRKDQLKLYTKYYRMQRFCALADELDQLAYRYRLIYV
HSGKYLTPMSLSMILSLICHLLGITVGFYSLYYAIADTLIMGKPYDGLGS
LINLVFLSISLAEITLLTHLCNHLLVATRRSAVILQEMNLQHADSRYRQA
VHGFTLLVTVTKYQIKPLGLYELDMRLISNVFSAVASFLLILVQADLSQR
FKMQ*

RT03126.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16722-PA 404 GF16722-PA 1..403 1..403 1590 72 Plus
Dana\GF22967-PA 331 GF22967-PA 2..325 56..377 618 38 Plus
Dana\GF18046-PA 414 GF18046-PA 190..402 181..402 156 21.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11182-PA 404 GG11182-PA 1..404 1..404 1905 89.4 Plus
Dere\GG12159-PA 417 GG12159-PA 38..417 26..404 724 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22382-PA 410 GH22382-PA 16..410 8..402 1163 53.7 Plus
Dgri\GH18967-PA 417 GH18967-PA 45..417 27..404 608 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-PA 404 CG31280-PA 1..404 1..404 2026 100 Plus
Gr97a-PB 425 CG33083-PB 29..425 9..404 699 37.4 Plus
Gr97a-PA 423 CG33083-PA 29..423 9..404 683 37.2 Plus
Gr93a-PA 419 CG13417-PA 67..409 49..402 180 21.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22003-PA 384 GI22003-PA 1..384 19..402 1118 54.7 Plus
Dmoj\GI23297-PA 421 GI23297-PA 44..421 26..404 648 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27123-PA 394 GL27123-PA 1..393 1..403 1493 70.7 Plus
Dper\GL23631-PA 427 GL23631-PA 41..427 19..404 724 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr94a-PA 404 GA16146-PA 6..403 6..403 1535 72.4 Plus
Dpse\Gr97a-PA 427 GA17266-PA 41..427 19..404 725 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26481-PA 404 GM26481-PA 1..404 1..404 1992 93.6 Plus
Dsec\GM10153-PA 319 GM10153-PA 1..319 88..404 634 39.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20995-PA 404 GD20995-PA 1..404 1..404 2017 94.6 Plus
Dsim\GD18108-PA 319 GD18108-PA 1..319 88..404 627 39.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14357-PA 408 GJ14357-PA 15..406 12..402 1041 50.8 Plus
Dvir\GJ24152-PA 421 GJ24152-PA 29..421 11..404 654 37.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19193-PA 411 GK19193-PA 34..406 28..400 1142 55 Plus
Dwil\GK15501-PA 234 GK15501-PA 1..234 172..404 522 46.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10348-PA 209 GE10348-PA 1..204 1..204 953 87.3 Plus
Dyak\GE10604-PA 425 GE10604-PA 29..425 9..404 760 38.9 Plus
Dyak\GE10349-PA 114 GE10349-PA 1..113 291..403 547 93.8 Plus

RT03126.hyp Sequence

Translation from 1 to 1214

> RT03126.hyp
MDFTSDYAHRRMVKFLTIILIGFMTVFGLLANRYRAGRRERFRFSKANLA
FASLWAIAFSLVYGRQIYKEYQEGQINLKDATTLYSYMNITVAVINYVSQ
MIISDHVAKVLSKVPFFDTLKEFRLDSRSLYISIVLALVKTVAFPLTIEV
AFILQQRRQHPEMSLIWTLYRLFPLIISNFLNNCYFGAMVVVKEILYALN
RRLEAQLQEVNLLQRKDQLKLYTKYYRMQRFCALADELDQLAYRYRLIYV
HSGKYLTPMSLSMILSLICHLLGITVGFYSLYYAIADTLIMGKPYDGLGS
LINLVFLSISLAEITLLTHLCNHLLVATRRSAVILQEMNLQHADSRYRQA
VHGFTLLVTVTKYQIKPLGLYELDMRLISNVFSAVASFLLILVQADLSQR
FKMQ*

RT03126.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-PA 404 CG31280-PA 1..404 1..404 2026 100 Plus
Gr97a-PB 425 CG33083-PB 29..425 9..404 699 37.4 Plus
Gr97a-PA 423 CG33083-PA 29..423 9..404 683 37.2 Plus
Gr93a-PA 419 CG13417-PA 67..409 49..402 180 21.8 Plus