Clone RT03134 Report

Search the DGRC for RT03134

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:31
Well:34
Vector:pCR2.1
Associated Gene/TranscriptTeh3-RA
Protein status:RT03134.pep: gold
Sequenced Size:1361

Clone Sequence Records

RT03134.complete Sequence

1361 bp assembled on 2010-06-21

GenBank Submission: BT100089.4

> RT03134.complete
ATGGGCAAGAAAAAGGTGCCCGTTGAGGACCTGGTGGTTCCACCGCAGGA
CACGCGAATATGCGGCACCATATGCATCTGCCAGATGACCCTGGTGCTCA
GCTCGGTGGCTCTCGTCTACCTCACGGTGGCCATATATATGCCCTCAACC
AGGGCCTTCAAAAGTGGCATCGATCCCACGCCGGTGATGTGCACCACCAC
GCGGGCGGTGAACAAGGACAACTGCGAGTGGGGCAGTTGTGGCGAGTGGT
GTCTGAGCAAGACTTCCGGAGCCTGCATCCAGATCTATGTGAATCTGCGC
AGCAATGGCAGCAATCTCATATTCCAGAACTGCACCAACTCGGCCAATAA
AACGTGCTACGGGATCGACCAGGATCGCGCGGACAAGGCCAGGTGCATCA
ATGATGAGTGCAAGAATCTCACGGGCACCTTCAATTGCACCGCTGGCCAG
TGTCTGAACATCACGGATGCCTTCGAGTGCATCTTCCACAACAGTGATGC
ACCAGTCAAGTGTTCCGGCAGGCGGGGAAAGATCAACTGCATGGACATCA
GCGGGCTGTACTCCTGCAGTCGAGGAACGTGCCGGAAGATCCGTACTCCC
TATAACTGTGACCGAAGGTGCGTGGACATCCCAACACGGAACAAGAACGT
GGTGGTCCTCAGCGGGGACAAGGTCTACCTGTCGCAGTGCCAGAATGCCA
TCAATGCCGAAACTCTGGAGGAGGTGTGGAACGAGTCAAGCGAAAATGTA
GCAATGACATCGTGTTACTTCATCAGGCACACCTCGGACCAGGTGGATGC
GGTGGACTGCATCAATGGCTCCACGCTGGAGACCAATATGCTCAGCGATC
TGACCAACTTCACATATCTGAGCCACCTGCACGTGTCGGTGGCCACTCCA
GTGCCGGAAATAGCACCACCCGATGTGGACCTCACCATTTCCAACGAGTC
CAAGCTGATGATCAATCTGGAGGGGTGTGTGAACACTCTGATGGACGAGT
GCAAGGAGTTCCTCAAGGACTTCGGACGCGATGGCAGCGACCACAATGCC
CGGGCCCGCTTCCCGTGCTTCTATTCGCCCGGAAAGAAGGACGTGGTGGT
GGCCCGATTCGACCTGGAGGTCACCTATCGCCAGTTTGTGTTCGCCTCGG
TAGTGCCATCGGTTCTGTTCGTGGTCTCGTGTTCCATCCTGATCATGTGC
CAGACCACCGTCTACGTGGGCGACGATGCCAAGATGCGCTTCAAAGGATG
TGTGGACACGGAGACGGTCCTGAATAAGAACAACGTGGGCGCACCCACCA
ACGGCGACATGGGCGGGGGCGGCGGCGATGAGGTTATGGCCCTATGACAC
TTCTATAGTGT

RT03134.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-RA 1347 Teh3-RA 1..1347 1..1347 6735 100 Plus
nc_10569.a 510 nc_10569.a 1..271 1077..1347 1355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4182703..4184049 1347..1 6735 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4183317..4184663 1347..1 6735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4183317..4184663 1347..1 6735 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:54:07 has no hits.

RT03134.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:56 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4182703..4184049 1..1347 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2011-03-16 13:21:33 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:36:55 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:48 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:42 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-21 18:05:18 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:36:54 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:48 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:42 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1347 1..1347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:56 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4183317..4184663 1..1347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:56 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4183317..4184663 1..1347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:56 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4183317..4184663 1..1347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:48 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4183317..4184663 1..1347 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:37 Download gff for RT03134.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4183317..4184663 1..1347 100   Minus

RT03134.pep Sequence

Translation from 0 to 1346

> RT03134.pep
MGKKKVPVEDLVVPPQDTRICGTICICQMTLVLSSVALVYLTVAIYMPST
RAFKSGIDPTPVMCTTTRAVNKDNCEWGSCGEWCLSKTSGACIQIYVNLR
SNGSNLIFQNCTNSANKTCYGIDQDRADKARCINDECKNLTGTFNCTAGQ
CLNITDAFECIFHNSDAPVKCSGRRGKINCMDISGLYSCSRGTCRKIRTP
YNCDRRCVDIPTRNKNVVVLSGDKVYLSQCQNAINAETLEEVWNESSENV
AMTSCYFIRHTSDQVDAVDCINGSTLETNMLSDLTNFTYLSHLHVSVATP
VPEIAPPDVDLTISNESKLMINLEGCVNTLMDECKEFLKDFGRDGSDHNA
RARFPCFYSPGKKDVVVARFDLEVTYRQFVFASVVPSVLFVVSCSILIMC
QTTVYVGDDAKMRFKGCVDTETVLNKNNVGAPTNGDMGGGGGDEVMAL*

RT03134.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23880-PA 448 GF23880-PA 1..448 1..448 2260 96 Plus
Dana\GF23882-PA 524 GF23882-PA 10..423 12..413 793 40.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14212-PA 448 GG14212-PA 1..448 1..448 2387 99.8 Plus
Dere\GG14214-PA 524 GG14214-PA 1..423 1..413 801 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15549-PA 449 GH15549-PA 1..449 1..448 2230 94.2 Plus
Dgri\GH15551-PA 530 GH15551-PA 10..423 12..413 806 40.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-PA 448 CG18676-PA 1..448 1..448 2407 100 Plus
Teh4-PB 524 CG15003-PB 1..423 1..413 820 39.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16824-PA 448 GI16824-PA 1..448 1..448 2231 94.6 Plus
Dmoj\GI16826-PA 525 GI16826-PA 10..423 12..413 800 40.1 Plus
Dmoj\GI21411-PA 75 GI21411-PA 1..63 1..63 313 95.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12732-PA 331 GL12732-PA 1..207 1..207 1096 98.6 Plus
Dper\GL12732-PA 331 GL12732-PA 208..331 325..448 650 96.8 Plus
Dper\GL12734-PA 129 GL12734-PA 10..124 12..134 320 50.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15048-PA 448 GA15048-PA 1..448 1..448 2344 97.5 Plus
Dpse\GA13421-PA 524 GA13421-PA 10..423 12..413 813 40.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14004-PA 448 GM14004-PA 1..448 1..448 2391 100 Plus
Dsec\GM14006-PA 519 GM14006-PA 1..423 1..413 799 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13284-PA 448 GD13284-PA 1..448 1..448 2391 100 Plus
Dsim\GD13287-PA 524 GD13287-PA 1..423 1..413 795 40.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12572-PA 448 GJ12572-PA 1..448 1..448 2271 94.4 Plus
Dvir\GJ12574-PA 518 GJ12574-PA 10..423 12..413 809 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10258-PA 449 GK10258-PA 1..449 1..448 2220 94.4 Plus
Dwil\GK10278-PA 544 GK10278-PA 10..450 12..437 825 39.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20640-PA 448 GE20640-PA 1..448 1..448 2387 99.8 Plus
Dyak\GE20642-PA 524 GE20642-PA 1..423 1..413 802 40.5 Plus

RT03134.hyp Sequence

Translation from 1 to 1346

> RT03134.hyp
MGKKKVPVEDLVVPPQDTRICGTICICQMTLVLSSVALVYLTVAIYMPST
RAFKSGIDPTPVMCTTTRAVNKDNCEWGSCGEWCLSKTSGACIQIYVNLR
SNGSNLIFQNCTNSANKTCYGIDQDRADKARCINDECKNLTGTFNCTAGQ
CLNITDAFECIFHNSDAPVKCSGRRGKINCMDISGLYSCSRGTCRKIRTP
YNCDRRCVDIPTRNKNVVVLSGDKVYLSQCQNAINAETLEEVWNESSENV
AMTSCYFIRHTSDQVDAVDCINGSTLETNMLSDLTNFTYLSHLHVSVATP
VPEIAPPDVDLTISNESKLMINLEGCVNTLMDECKEFLKDFGRDGSDHNA
RARFPCFYSPGKKDVVVARFDLEVTYRQFVFASVVPSVLFVVSCSILIMC
QTTVYVGDDAKMRFKGCVDTETVLNKNNVGAPTNGDMGGGGGDEVMAL*

RT03134.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-PA 448 CG18676-PA 1..448 1..448 2407 100 Plus
Teh4-PB 524 CG15003-PB 1..423 1..413 820 39.5 Plus