Clone Sequence Records
RT03217.complete Sequence
570 bp assembled on 2010-02-26
GenBank Submission: BT100094.3
> RT03217.complete
ATGCGCAGTTTTTGTTGTTGTTTTTATCCGGCTGCTGTGGCGTTGCACTG
CGTATTACTGTTTTACACTTTTTTTTTACTTTTTAGAGCGTCCGCGTTGC
GGCGACGCGTTGTAAGCGGTTCGAAAGGTAGCGCAGCACTGGCGCTCTGC
CGCCAATTCGAACAGCTGAGCGCCAGCCGAAGAGAGAGAGCCGAAGAGTG
CCGAACGACGCAGCTCCGCTACCACTACCACCGCAATGGCGCTCAGTCGC
GGTCGCTGTGCGCTGCTGTGCTCTGCTGTAAGCGCTCTTACATTCCGCGC
CCGAATTTTTCGTGCTTTTCCCTTGTTTTCCCTGTGGGCCAGCGTTTCGC
TGCTGCTCGGACTCGGTTTGGGCCAACACTTGTCGCCTCTTGGCCATTAT
GCAACGACAGCGAAACGAAGGTGCTCACGAAGTGGCCAAGCTGCTCTCTG
ATTGGTCGGCGGTCAGTGCCACGAGGCCAGCCGAAGTTCTCTCGCGAGAA
CCCAAGAGCACTCTCTCCCTCTCTTTTGGGAGAGATGAGATAGCACTTCT
ATAGTGTCACCTAAATTCGC
RT03217.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amn-RA | 3953 | amn-RA | 2569..3113 | 1..545 | 2725 | 100 | Plus |
CG32529-RD | 6663 | CG32529-RD | 1..143 | 143..1 | 715 | 100 | Minus |
CG32529.j | 7274 | CG32529.j | 1..143 | 143..1 | 715 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 19775552..19776097 | 545..1 | 2680 | 99.8 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19886948..19887492 | 545..1 | 2725 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 19895046..19895590 | 545..1 | 2725 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 18:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 6980..7040 | 64..1 | 123 | 70.3 | Minus |
RT03217.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:14:43 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 19775552..19776097 | 1..545 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:10:23 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 1..543 | 1..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:50 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 1..543 | 1..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:56:52 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 1..543 | 1..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:17 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 1..543 | 1..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:10:22 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 2569..3113 | 1..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:50 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 2569..3113 | 1..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:56:52 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 2569..3113 | 1..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:17 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
amn-RA | 2569..3113 | 1..545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19886948..19887492 | 1..545 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19886948..19887492 | 1..545 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19886948..19887492 | 1..545 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:56:52 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19780981..19781525 | 1..545 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:24 Download gff for
RT03217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19895046..19895590 | 1..545 | 100 | | Minus |
RT03217.pep Sequence
Translation from 0 to 542
> RT03217.pep
MRSFCCCFYPAAVALHCVLLFYTFFLLFRASALRRRVVSGSKGSAALALC
RQFEQLSASRRERAEECRTTQLRYHYHRNGAQSRSLCAAVLCCKRSYIPR
PNFSCFSLVFPVGQRFAAARTRFGPTLVASWPLCNDSETKVLTKWPSCSL
IGRRSVPRGQPKFSRENPRALSPSLLGEMR*
RT03217.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amn-PA | 180 | CG11937-PA | 1..180 | 1..180 | 957 | 100 | Plus |
RT03217.hyp Sequence
Translation from 1 to 542
> RT03217.hyp
MRSFCCCFYPAAVALHCVLLFYTFFLLFRASALRRRVVSGSKGSAALALC
RQFEQLSASRRERAEECRTTQLRYHYHRNGAQSRSLCAAVLCCKRSYIPR
PNFSCFSLVFPVGQRFAAARTRFGPTLVASWPLCNDSETKVLTKWPSCSL
IGRRSVPRGQPKFSRENPRALSPSLLGEMR*
RT03217.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
amn-PA | 180 | CG11937-PA | 1..180 | 1..180 | 957 | 100 | Plus |