Clone RT03217 Report

Search the DGRC for RT03217

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:32
Well:17
Vector:pCR2.1
Associated Gene/Transcriptamn-RA
Protein status:RT03217.pep: gold
Sequenced Size:570

Clone Sequence Records

RT03217.complete Sequence

570 bp assembled on 2010-02-26

GenBank Submission: BT100094.3

> RT03217.complete
ATGCGCAGTTTTTGTTGTTGTTTTTATCCGGCTGCTGTGGCGTTGCACTG
CGTATTACTGTTTTACACTTTTTTTTTACTTTTTAGAGCGTCCGCGTTGC
GGCGACGCGTTGTAAGCGGTTCGAAAGGTAGCGCAGCACTGGCGCTCTGC
CGCCAATTCGAACAGCTGAGCGCCAGCCGAAGAGAGAGAGCCGAAGAGTG
CCGAACGACGCAGCTCCGCTACCACTACCACCGCAATGGCGCTCAGTCGC
GGTCGCTGTGCGCTGCTGTGCTCTGCTGTAAGCGCTCTTACATTCCGCGC
CCGAATTTTTCGTGCTTTTCCCTTGTTTTCCCTGTGGGCCAGCGTTTCGC
TGCTGCTCGGACTCGGTTTGGGCCAACACTTGTCGCCTCTTGGCCATTAT
GCAACGACAGCGAAACGAAGGTGCTCACGAAGTGGCCAAGCTGCTCTCTG
ATTGGTCGGCGGTCAGTGCCACGAGGCCAGCCGAAGTTCTCTCGCGAGAA
CCCAAGAGCACTCTCTCCCTCTCTTTTGGGAGAGATGAGATAGCACTTCT
ATAGTGTCACCTAAATTCGC

RT03217.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
amn-RA 3953 amn-RA 2569..3113 1..545 2725 100 Plus
CG32529-RD 6663 CG32529-RD 1..143 143..1 715 100 Minus
CG32529.j 7274 CG32529.j 1..143 143..1 715 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19775552..19776097 545..1 2680 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19886948..19887492 545..1 2725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19895046..19895590 545..1 2725 100 Minus
Blast to na_te.dros performed 2019-03-15 18:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6980..7040 64..1 123 70.3 Minus

RT03217.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:14:43 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19775552..19776097 1..545 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 18:10:23 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 1..543 1..543 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:50 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 1..543 1..543 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:56:52 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 1..543 1..543 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:17 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 1..543 1..543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 18:10:22 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3113 1..545 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:50 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3113 1..545 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:56:52 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3113 1..545 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:17 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3113 1..545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
X 19886948..19887492 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
X 19886948..19887492 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:14:43 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
X 19886948..19887492 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:56:52 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19780981..19781525 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:24 Download gff for RT03217.complete
Subject Subject Range Query Range Percent Splice Strand
X 19895046..19895590 1..545 100   Minus

RT03217.pep Sequence

Translation from 0 to 542

> RT03217.pep
MRSFCCCFYPAAVALHCVLLFYTFFLLFRASALRRRVVSGSKGSAALALC
RQFEQLSASRRERAEECRTTQLRYHYHRNGAQSRSLCAAVLCCKRSYIPR
PNFSCFSLVFPVGQRFAAARTRFGPTLVASWPLCNDSETKVLTKWPSCSL
IGRRSVPRGQPKFSRENPRALSPSLLGEMR*

RT03217.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
amn-PA 180 CG11937-PA 1..180 1..180 957 100 Plus

RT03217.hyp Sequence

Translation from 1 to 542

> RT03217.hyp
MRSFCCCFYPAAVALHCVLLFYTFFLLFRASALRRRVVSGSKGSAALALC
RQFEQLSASRRERAEECRTTQLRYHYHRNGAQSRSLCAAVLCCKRSYIPR
PNFSCFSLVFPVGQRFAAARTRFGPTLVASWPLCNDSETKVLTKWPSCSL
IGRRSVPRGQPKFSRENPRALSPSLLGEMR*

RT03217.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
amn-PA 180 CG11937-PA 1..180 1..180 957 100 Plus