BDGP Sequence Production Resources |
Search the DGRC for RT03229
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 32 |
Well: | 29 |
Vector: | pCR2.1 |
Associated Gene/Transcript | obst-I-RA |
Protein status: | RT03229.pep: gold |
Sequenced Size: | 681 |
681 bp assembled on 2010-03-15
GenBank Submission: BT100064.3
> RT03229.complete ATGGATTCATCTCGCCTGATTATCTGCCTCCTAACTTTTCTGTTGTTTCA AACGGGAAAAGGGTTGGGGAACGGCAGTTATCTGGAGCTCAGATTGGATG CAGCTGCTGAATCCTGTCCAGATGATTACTACTTTAACGAAACTATCCAA GCCTGCGTATCTACAGACACTACCAGCTGTACCAATCACCAAATCGGCAA ATGTCCGATGGCCACAGAAATGGACGAGTTTTGCGTGTGCAAAGATAAGC ACCTTCAGATCTGGAAATGCCCTGAAGGAACCTACTTCGATGCCAACCGA TTGGTCTGCCGGGTGGGAAGCGTTGAGTGCCAGGACGATTATACTCCATC CCCATGTCCTAACAGCACGGCAAGCGATGTCTTCTGCCTCTGCATCGATG GCAAATGGCATCTTAACTACTGTCCAACGGGCTTTACCTTTGATGACGAG CTGCAGATTTGCCTGAACACAGGATCTGATGACGACGAGTTGCCCAGTTC GTCTGGAAAGTGCCAGCGGCTTGGATTGTTTGGTGATCCCGCTGACTGCT CTGGGTACTATCATTGTCGCGAAAAGGGCAGTGATATTGAGTATTTCAGA TGCTCGGTAGGAACCATCTTCAATCTAATTTCCTTTGCGTGCGTTACTGG AACTTGTTGACACTTCTATAGTGTCACCTAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
obst-I-RA | 660 | obst-I-RA | 1..660 | 1..660 | 3300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 2267276..2267936 | 1..661 | 3305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 2267870..2268530 | 1..661 | 3305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 2267870..2268530 | 1..661 | 3305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 2267276..2267944 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..660 | 1..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..660 | 1..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..660 | 1..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..660 | 1..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..660 | 1..660 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..661 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 1..661 | 1..661 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
obst-I-RA | 13..681 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2267870..2268538 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2267870..2268538 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2267870..2268538 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 2267870..2268538 | 1..670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2267870..2268538 | 1..670 | 99 | Plus |
Translation from 0 to 659
> RT03229.pep MDSSRLIICLLTFLLFQTGKGLGNGSYLELRLDAAAESCPDDYYFNETIQ ACVSTDTTSCTNHQIGKCPMATEMDEFCVCKDKHLQIWKCPEGTYFDANR LVCRVGSVECQDDYTPSPCPNSTASDVFCLCIDGKWHLNYCPTGFTFDDE LQICLNTGSDDDELPSSSGKCQRLGLFGDPADCSGYYHCREKGSDIEYFR CSVGTIFNLISFACVTGTC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24909-PA | 217 | GF24909-PA | 9..217 | 6..219 | 531 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14853-PA | 217 | GG14853-PA | 1..217 | 1..219 | 837 | 72.1 | Plus |
Dere\GG14854-PA | 313 | GG14854-PA | 207..307 | 54..154 | 152 | 29.7 | Plus |
Dere\GG14854-PA | 313 | GG14854-PA | 242..313 | 38..109 | 147 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16472-PA | 136 | GH16472-PA | 47..136 | 131..219 | 168 | 41.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
obst-I-PA | 219 | CG32304-PA | 1..219 | 1..219 | 1232 | 100 | Plus |
CG32302-PA | 313 | CG32302-PA | 195..308 | 38..154 | 177 | 31.6 | Plus |
CG17826-PA | 751 | CG17826-PA | 109..286 | 38..215 | 153 | 25.4 | Plus |
CG43896-PB | 1324 | CG43896-PB | 178..382 | 33..208 | 148 | 24.5 | Plus |
CG43896-PD | 2113 | CG43896-PD | 178..382 | 33..208 | 148 | 24.5 | Plus |
CG43896-PC | 2113 | CG43896-PC | 178..382 | 33..208 | 148 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12145-PA | 130 | GI12145-PA | 38..130 | 128..219 | 172 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24645-PA | 344 | GL24645-PA | 225..344 | 59..219 | 214 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16817-PA | 344 | GA16817-PA | 225..344 | 59..219 | 211 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14479-PA | 219 | GM14479-PA | 1..219 | 1..219 | 1061 | 90.9 | Plus |
Dsec\GM14480-PA | 312 | GM14480-PA | 207..307 | 54..154 | 156 | 31.7 | Plus |
Dsec\GM14480-PA | 312 | GM14480-PA | 242..311 | 38..107 | 144 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13675-PA | 219 | GD13675-PA | 1..219 | 1..219 | 1061 | 90.9 | Plus |
Dsim\GD13676-PA | 312 | GD13676-PA | 207..307 | 54..154 | 157 | 30.7 | Plus |
Dsim\GD13676-PA | 312 | GD13676-PA | 242..311 | 38..107 | 146 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13423-PA | 135 | GJ13423-PA | 45..135 | 131..219 | 172 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20310-PA | 202 | GE20310-PA | 2..202 | 19..219 | 886 | 79.6 | Plus |
Dyak\GE20311-PA | 313 | GE20311-PA | 207..307 | 54..154 | 155 | 30.7 | Plus |
Dyak\GE20311-PA | 313 | GE20311-PA | 242..313 | 38..109 | 153 | 36.1 | Plus |
Translation from 1 to 659
> RT03229.hyp MDSSRLIICLLTFLLFQTGKGLGNGSYLELRLDAAAESCPDDYYFNETIQ ACVSTDTTSCTNHQIGKCPMATEMDEFCVCKDKHLQIWKCPEGTYFDANR LVCRVGSVECQDDYTPSPCPNSTASDVFCLCIDGKWHLNYCPTGFTFDDE LQICLNTGSDDDELPSSSGKCQRLGLFGDPADCSGYYHCREKGSDIEYFR CSVGTIFNLISFACVTGTC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
obst-I-PA | 219 | CG32304-PA | 1..219 | 1..219 | 1232 | 100 | Plus |
CG32302-PA | 313 | CG32302-PA | 195..308 | 38..154 | 177 | 31.6 | Plus |
CG17826-PA | 751 | CG17826-PA | 109..286 | 38..215 | 153 | 25.4 | Plus |
CG43896-PB | 1324 | CG43896-PB | 178..382 | 33..208 | 148 | 24.5 | Plus |
CG43896-PD | 2113 | CG43896-PD | 178..382 | 33..208 | 148 | 24.5 | Plus |