Clone RT03232 Report

Search the DGRC for RT03232

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:32
Well:32
Vector:pCR2.1
Associated Gene/TranscriptCpr76Ba-RA
Protein status:RT03232.pep: gold
Sequenced Size:632

Clone Sequence Records

RT03232.complete Sequence

632 bp assembled on 2010-06-21

GenBank Submission: BT100095.4

> RT03232.complete
ATGGCCCACCAATTGAGCATCCTCTGCTGCGCACTTCTGGGAGTGGCTGC
TGCTAGCTACATCCCTCATGGTGGATATAGTCACGAACACGGCGTGGGGT
ACAGCATCCAGACGCATCACGAGGCGCCCAAGCAGTGGCAGGATCACCAC
CAGGCTCACCACCAATGGGTGGATGTCCCAAAGGCCCATTCATGGGGCAC
AGTTCAGGATCATCACCACCAGCAGTGGGCTCCAGTCGCTGCGCACGATA
GCCACCACCAGTGGAGCCACCACGAGGAACCCAAACACCATCCCAAATAC
GAATTCAATTACGGGGTGAAGGACACCAAGACCGGCGACATCAAGCAGCA
GTGGGAGACCCGCGATGGCGACAAGGTCAAGGGAGGCTACACCATGAAGG
AGGCCGACGGACGCACCAGGATCGTTGAGTACACCGCCGACTCCCACAAC
GGATTCCAGGCAACCGTGAAGCATGTGGGACACGCCAGTCACTTGGAGCA
CAGCCACTCATATGGCCAGCAATACGGACATGGGCATGGTCATGCCACCA
GCTACGTGGATGTCAAACAGGACACCAGCAGCAAATGGGAGGACAAGAGC
AACAAGTGGTGGTAGCACTTCTATAGTGTCAC

RT03232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr76Ba-RA 615 Cpr76Ba-RA 1..615 1..615 3075 100 Plus
Cpr76Bb-RA 597 Cpr76Bb-RA 244..359 286..401 205 78.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19507101..19507715 615..1 3075 100 Minus
chr3L 24539361 chr3L 19509340..19509510 286..456 225 75.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19517661..19518275 615..1 3075 100 Minus
3L 28110227 3L 19519938..19520108 286..456 225 75.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19510761..19511375 615..1 3075 100 Minus
3L 28103327 3L 19513038..19513153 286..401 205 78.4 Plus
Blast to na_te.dros performed on 2019-03-16 09:57:21 has no hits.

RT03232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:58:05 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19507101..19507715 1..615 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2011-03-16 13:21:32 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:36:53 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:04:29 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:43 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-21 17:05:50 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:36:53 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 1..615 1..615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:04:29 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 58..672 1..615 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:43 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr76Ba-RA 58..672 1..615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:58:05 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19517661..19518275 1..615 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:58:05 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19517661..19518275 1..615 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:58:05 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19517661..19518275 1..615 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:04:29 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19510761..19511375 1..615 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:35 Download gff for RT03232.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19510761..19511375 1..615 100   Minus

RT03232.pep Sequence

Translation from 0 to 614

> RT03232.pep
MAHQLSILCCALLGVAAASYIPHGGYSHEHGVGYSIQTHHEAPKQWQDHH
QAHHQWVDVPKAHSWGTVQDHHHQQWAPVAAHDSHHQWSHHEEPKHHPKY
EFNYGVKDTKTGDIKQQWETRDGDKVKGGYTMKEADGRTRIVEYTADSHN
GFQATVKHVGHASHLEHSHSYGQQYGHGHGHATSYVDVKQDTSSKWEDKS
NKWW*

RT03232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10753-PA 201 GF10753-PA 1..201 1..204 597 69.5 Plus
Dana\GF23679-PA 196 GF23679-PA 8..194 8..190 328 46.3 Plus
Dana\GF10287-PA 375 GF10287-PA 30..134 77..190 238 44.7 Plus
Dana\GF24956-PA 188 GF24956-PA 54..117 97..160 218 60.9 Plus
Dana\GF10288-PA 157 GF10288-PA 1..140 1..156 213 41 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13400-PA 195 GG13400-PA 1..195 1..204 805 83.1 Plus
Dere\GG16039-PA 198 GG16039-PA 7..196 6..190 322 43.4 Plus
Dere\GG16040-PA 424 GG16040-PA 53..120 97..164 219 61.8 Plus
Dere\GG14555-PA 180 GG14555-PA 51..114 97..160 214 60.9 Plus
Dere\GG14302-PA 162 GG14302-PA 87..145 98..156 208 64.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14395-PA 191 GH14395-PA 1..191 1..196 543 64 Plus
Dgri\GH17176-PA 192 GH17176-PA 1..191 1..196 541 64 Plus
Dgri\GH17178-PA 200 GH17178-PA 7..198 7..190 312 43 Plus
Dgri\GH15052-PA 136 GH15052-PA 43..108 91..156 229 63.6 Plus
Dgri\GH15041-PA 182 GH15041-PA 53..112 97..156 216 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr76Ba-PA 204 CG9283-PA 1..204 1..204 1186 100 Plus
Cpr76Bb-PA 198 CG9290-PA 14..196 15..190 391 43.9 Plus
Cpr35B-PA 218 CG3474-PA 3..166 4..198 277 36.4 Plus
Cpr66Cb-PA 162 CG7076-PA 1..162 1..171 257 38.3 Plus
CG34461-PB 138 CG34461-PB 30..120 72..168 245 51.5 Plus
CG34461-PA 138 CG34461-PA 30..120 72..168 245 51.5 Plus
Cpr62Bc-PB 180 CG1919-PB 12..118 59..164 231 46.8 Plus
Cpr62Bc-PA 180 CG1919-PA 12..118 59..164 231 46.8 Plus
Cpr76Bc-PD 424 CG9295-PD 33..120 77..164 224 50 Plus
Cpr76Bc-PC 424 CG9295-PC 33..120 77..164 224 50 Plus
Cpr62Bb-PC 194 CG13935-PC 32..101 97..166 213 58.6 Plus
Cpr62Bb-PB 194 CG13935-PB 32..101 97..166 213 58.6 Plus
Cpr62Bb-PA 194 CG13935-PA 32..101 97..166 213 58.6 Plus
Ccp84Ac-PA 217 CG1327-PA 1..157 1..193 205 31.6 Plus
Cpr64Ad-PB 247 CG1259-PB 143..203 97..157 189 60.7 Plus
Edg84A-PA 188 CG2345-PA 34..94 97..157 188 55.7 Plus
Cpr64Aa-PA 192 CG15006-PA 57..120 97..160 188 56.2 Plus
Ccp84Aa-PA 205 CG2360-PA 54..118 92..156 188 58.5 Plus
Ccp84Ag-PA 191 CG2342-PA 34..99 92..157 186 54.5 Plus
Cpr30F-PA 146 CG31876-PA 40..102 92..157 185 54.5 Plus
Cpr23B-PA 302 CG2973-PA 127..219 69..162 185 44.8 Plus
Ccp84Ab-PA 221 CG1252-PA 54..118 92..156 183 56.9 Plus
Cpr92A-PA 245 CG6240-PA 66..125 98..157 183 55 Plus
Cpr31A-PA 340 CG33302-PA 128..192 93..157 182 55.4 Plus
Ccp84Af-PA 151 CG1331-PA 38..121 77..159 181 48.8 Plus
Cpr64Ab-PA 120 CG15007-PA 39..99 97..157 179 57.4 Plus
Ccp84Ad-PA 199 CG2341-PA 38..118 77..156 177 49.4 Plus
Crys-PB 477 CG16963-PB 68..133 91..156 176 54.5 Plus
Crys-PA 477 CG16963-PA 68..133 91..156 176 54.5 Plus
Ccp84Ae-PA 208 CG1330-PA 43..108 92..157 175 53 Plus
Cpr30B-PA 153 CG3818-PA 25..90 93..157 173 53 Plus
CG13670-PA 266 CG13670-PA 101..185 98..186 172 42.7 Plus
Cpr76Bd-PD 1228 CG9299-PD 1110..1209 59..156 171 43 Plus
Cpr76Bd-PB 1228 CG9299-PB 1110..1209 59..156 171 43 Plus
Cpr76Bd-PC 1231 CG9299-PC 1113..1212 59..156 171 43 Plus
Cpr5C-PA 145 CG4052-PA 56..120 92..156 169 50.8 Plus
Cpr64Ac-PA 188 CG15008-PA 89..155 97..163 159 50.7 Plus
CG42367-PC 103 CG42367-PC 27..96 89..157 156 47.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13522-PA 185 GI13522-PA 1..184 1..196 605 66.5 Plus
Dmoj\GI11790-PA 250 GI11790-PA 131..223 93..183 293 63.4 Plus
Dmoj\GI12819-PA 389 GI12819-PA 46..124 68..156 241 57.3 Plus
Dmoj\GI11792-PA 434 GI11792-PA 44..130 77..164 227 52.3 Plus
Dmoj\GI12933-PA 163 GI12933-PA 51..110 97..156 220 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20893-PA 214 GL20893-PA 1..214 1..204 731 70.2 Plus
Dper\GL20937-PA 198 GL20937-PA 1..196 5..190 340 44.1 Plus
Dper\GL24692-PA 133 GL24692-PA 24..105 65..156 237 54.3 Plus
Dper\GL24694-PA 159 GL24694-PA 1..142 1..156 217 41.7 Plus
Dper\GL24824-PA 195 GL24824-PA 32..101 97..166 211 58.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21668-PA 214 GA21668-PA 1..214 1..204 735 70.7 Plus
Dpse\GA21674-PA 198 GA21674-PA 1..196 5..190 340 44.1 Plus
Dpse\GA23954-PA 133 GA23954-PA 24..105 65..156 237 54.3 Plus
Dpse\GA15131-PA 183 GA15131-PA 50..109 97..156 218 63.3 Plus
Dpse\GA20083-PA 159 GA20083-PA 1..142 1..156 217 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18103-PA 205 GM18103-PA 1..205 1..204 1022 97.1 Plus
Dsec\GM19580-PA 198 GM19580-PA 8..196 8..190 322 45.3 Plus
Dsec\GM14163-PA 180 GM14163-PA 51..114 97..160 214 60.9 Plus
Dsec\GM14164-PA 225 GM14164-PA 32..99 97..164 210 60.3 Plus
Dsec\GM25044-PA 162 GM25044-PA 87..145 98..156 208 64.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12275-PA 205 GD12275-PA 1..205 1..204 1009 95.6 Plus
Dsim\GD14807-PA 198 GD14807-PA 8..196 8..190 325 44.8 Plus
Dsim\GD14078-PA 177 GD14078-PA 71..162 77..165 237 52.6 Plus
Dsim\GD13434-PA 180 GD13434-PA 51..114 97..160 214 60.9 Plus
Dsim\GD17606-PA 192 GD17606-PA 32..99 97..164 212 60.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11882-PA 187 GJ11882-PA 1..186 1..196 634 68.2 Plus
Dvir\GJ13494-PA 198 GJ13494-PA 7..196 7..190 308 42.2 Plus
Dvir\GJ12961-PA 135 GJ12961-PA 34..107 77..156 238 58.8 Plus
Dvir\GJ13495-PA 379 GJ13495-PA 6..73 97..164 223 61.8 Plus
Dvir\GJ12945-PA 178 GJ12945-PA 51..110 97..156 218 63.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19436-PA 266 GK19436-PA 10..184 5..188 313 41.6 Plus
Dwil\GK11910-PA 389 GK11910-PA 31..107 77..156 243 60 Plus
Dwil\GK20220-PA 431 GK20220-PA 32..118 79..164 224 52.9 Plus
Dwil\GK20563-PA 184 GK20563-PA 50..109 97..156 219 63.3 Plus
Dwil\GK20564-PA 195 GK20564-PA 32..101 97..166 216 58.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22495-PA 208 GE22495-PA 1..208 1..204 880 89.4 Plus
Dyak\GE22774-PA 208 GE22774-PA 1..208 1..204 875 88.9 Plus
Dyak\GE23205-PA 198 GE23205-PA 8..196 7..190 319 44.1 Plus
Dyak\GE19605-PA 195 GE19605-PA 8..193 7..190 309 44.1 Plus
Dyak\GE19606-PA 424 GE19606-PA 33..120 77..164 226 52.3 Plus

RT03232.hyp Sequence

Translation from 1 to 614

> RT03232.hyp
MAHQLSILCCALLGVAAASYIPHGGYSHEHGVGYSIQTHHEAPKQWQDHH
QAHHQWVDVPKAHSWGTVQDHHHQQWAPVAAHDSHHQWSHHEEPKHHPKY
EFNYGVKDTKTGDIKQQWETRDGDKVKGGYTMKEADGRTRIVEYTADSHN
GFQATVKHVGHASHLEHSHSYGQQYGHGHGHATSYVDVKQDTSSKWEDKS
NKWW*

RT03232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr76Ba-PA 204 CG9283-PA 1..204 1..204 1186 100 Plus
Cpr76Bb-PA 198 CG9290-PA 14..196 15..190 391 43.9 Plus
Cpr35B-PA 218 CG3474-PA 3..166 4..198 277 36.4 Plus
Cpr66Cb-PA 162 CG7076-PA 1..162 1..171 257 38.3 Plus
CG34461-PB 138 CG34461-PB 30..120 72..168 245 51.5 Plus