Clone RT03322 Report

Search the DGRC for RT03322

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:33
Well:22
Vector:pCR2.1
Associated Gene/TranscriptLcp65Ae-RA
Protein status:RT03322.pep: gold
Sequenced Size:300

Clone Sequence Records

RT03322.complete Sequence

300 bp assembled on 2010-06-21

GenBank Submission: BT100149.4

> RT03322.complete
ATGAAATTCCTGATCGTCTTTGTAGCAATCTTCGCTTTTGCTTTGGCTAA
CGAAGCGCAAATTATTAACTTGGAATCCGATGTTGGACCCGAAAACTTTC
AGTGGTCCTTCGAGACCAGCGATGGCCAGGCGGCTAACGCTAAGGGACAG
TTGAAGTACCCTAACACCGACCACGAGTCCCTTGCTGTCCAGGGATCCTT
CCGCTTCGTTGCCGATGATGGCCAGACCTACGAAGTCAACTACATCGCCG
ATGAGAACGGATTCCAGCCCCAGGGTGCCCATCTTCCCGTTGCCTCCTAA

RT03322.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ae-RA 622 Lcp65Ae-RA 200..499 1..300 1500 100 Plus
nc_10900.a 372 nc_10900.a 262..363 193..294 405 93.1 Plus
Lcp65Ag2-RA 757 Lcp65Ag2-RA 339..440 193..294 405 93.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6130272..6130462 298..108 955 100 Minus
chr3L 24539361 chr3L 6130523..6130629 107..1 505 98.1 Minus
chr3L 24539361 chr3L 6127402..6127503 294..193 405 93.1 Minus
chr3L 24539361 chr3L 6125723..6125824 294..193 405 93.1 Minus
chr3L 24539361 chr3L 6123121..6123222 294..193 390 92.2 Minus
chr3L 24539361 chr3L 6137715..6137838 165..288 320 83.9 Plus
chr3L 24539361 chr3L 6140124..6140229 294..189 290 84.9 Minus
chr3L 24539361 chr3L 6142995..6143100 294..189 290 84.9 Minus
chr3L 24539361 chr3L 6128935..6129025 294..204 245 84.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:42:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6137719..6137911 300..108 965 100 Minus
3L 28110227 3L 6137972..6138078 107..1 535 100 Minus
3L 28110227 3L 6133166..6133267 294..193 405 93.1 Minus
3L 28110227 3L 6134847..6134948 294..193 405 93.1 Minus
3L 28110227 3L 6130563..6130664 294..193 390 92.2 Minus
3L 28110227 3L 6145166..6145289 165..288 320 83.9 Plus
3L 28110227 3L 6147575..6147680 294..189 290 84.9 Minus
3L 28110227 3L 6150446..6150551 294..189 290 84.9 Minus
3L 28110227 3L 6136392..6136482 294..204 260 85.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6130819..6131011 300..108 965 100 Minus
3L 28103327 3L 6131072..6131178 107..1 535 100 Minus
3L 28103327 3L 6127947..6128048 294..193 405 93.1 Minus
3L 28103327 3L 6126266..6126367 294..193 405 93.1 Minus
3L 28103327 3L 6123663..6123764 294..193 390 92.1 Minus
3L 28103327 3L 6138266..6138389 165..288 320 83.8 Plus
3L 28103327 3L 6143546..6143651 294..189 290 84.9 Minus
3L 28103327 3L 6140675..6140780 294..189 290 84.9 Minus
3L 28103327 3L 6129492..6129582 294..204 260 85.7 Minus
Blast to na_te.dros performed on 2019-03-15 16:00:24 has no hits.

RT03322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:01:32 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6130270..6130462 108..300 100 <- Minus
chr3L 6130523..6130629 1..107 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2011-03-16 13:21:44 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..298 1..298 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:09 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..300 1..300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:48:23 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..300 1..300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:22:58 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..300 1..300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-21 18:05:28 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..298 1..298 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:09 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 1..300 1..300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:23 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 41..340 1..300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:22:58 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ae-RA 41..340 1..300 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:32 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6137719..6137911 108..300 100 <- Minus
3L 6137972..6138078 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:32 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6137719..6137911 108..300 100 <- Minus
3L 6137972..6138078 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:32 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6137719..6137911 108..300 100 <- Minus
3L 6137972..6138078 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:23 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6130819..6131011 108..300 100 <- Minus
arm_3L 6131072..6131178 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:39 Download gff for RT03322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6130819..6131011 108..300 100 <- Minus
3L 6131072..6131178 1..107 100   Minus

RT03322.pep Sequence

Translation from 0 to 299

> RT03322.pep
MKFLIVFVAIFAFALANEAQIINLESDVGPENFQWSFETSDGQAANAKGQ
LKYPNTDHESLAVQGSFRFVADDGQTYEVNYIADENGFQPQGAHLPVAS*

RT03322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10921-PA 101 GF10921-PA 1..98 1..98 373 71.4 Plus
Dana\GF10922-PA 100 GF10922-PA 1..99 1..98 320 72.7 Plus
Dana\GF23526-PA 115 GF23526-PA 30..112 16..98 320 73.5 Plus
Dana\GF10923-PA 105 GF10923-PA 1..102 1..98 310 71.6 Plus
Dana\GF10918-PA 105 GF10918-PA 22..102 18..98 298 70.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14083-PA 105 GG14083-PA 1..102 1..98 296 65.7 Plus
Dere\GG15327-PA 104 GG15327-PA 1..101 1..98 282 57.4 Plus
Dere\GG15326-PA 109 GG15326-PA 25..103 18..96 275 64.6 Plus
Dere\GG15325-PA 108 GG15325-PA 1..104 1..96 273 50 Plus
Dere\GG14079-PA 106 GG14079-PA 26..103 21..98 270 64.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15651-PA 99 GH15651-PA 1..99 1..98 316 61.6 Plus
Dgri\GH15650-PA 101 GH15650-PA 1..97 1..96 304 59.8 Plus
Dgri\GH13967-PA 99 GH13967-PA 1..99 1..98 275 52.5 Plus
Dgri\GH15648-PA 99 GH15648-PA 1..99 1..98 272 52.5 Plus
Dgri\GH15836-PA 110 GH15836-PA 1..104 1..96 272 55.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ae-PA 99 CG10529-PA 1..99 1..99 513 100 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..102 1..98 349 67.6 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..102 1..98 349 67.6 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..102 1..98 346 66.7 Plus
Lcp65Af-PA 100 CG10533-PA 1..97 1..98 327 65.3 Plus
Lcp65Ac-PA 109 CG6956-PA 7..103 5..96 288 59.8 Plus
Lcp65Ad-PB 108 CG6955-PB 1..104 1..96 270 51 Plus
Lcp65Ad-PA 108 CG6955-PA 1..104 1..96 270 51 Plus
Cpr65Ax2-PB 102 CG18777-PB 1..99 1..98 265 52.5 Plus
Cpr65Ax2-PA 102 CG18777-PA 1..99 1..98 265 52.5 Plus
Cpr65Ax1-PA 102 CG34270-PA 1..99 1..98 265 52.5 Plus
Lcp65Ab1-PA 104 CG32400-PA 1..101 1..98 252 53.5 Plus
Lcp65Ab2-PA 104 CG18773-PA 1..101 1..98 252 53.5 Plus
Lcp65Aa-PA 102 CG7287-PA 1..100 1..96 224 44 Plus
Cpr65Av-PA 111 CG32405-PA 6..109 5..96 213 44.2 Plus
Acp65Aa-PA 105 CG10297-PA 2..104 1..96 208 41.7 Plus
Cpr65Aw-PA 117 CG32404-PA 12..104 4..96 193 43.6 Plus
Cpr65Aw-PB 86 CG32404-PB 14..73 37..96 177 55 Plus
Cpr49Af-PB 126 CG8510-PB 1..98 1..96 173 41.4 Plus
Cpr49Af-PA 126 CG8510-PA 1..98 1..96 173 41.4 Plus
Cpr47Ea-PA 135 CG9079-PA 41..119 19..96 173 40.5 Plus
Cpr49Aa-PB 144 CG30045-PB 1..109 1..96 171 34.9 Plus
Cpr11B-PB 195 CG2555-PB 67..149 18..98 159 40.5 Plus
Cpr11B-PA 197 CG2555-PA 67..149 18..98 159 40.5 Plus
Cpr65Az-PA 239 CG12330-PA 116..193 21..96 156 43.6 Plus
Lcp9-PA 92 CG16914-PA 1..88 1..91 147 35.9 Plus
Cpr49Ab-PA 259 CG30042-PA 161..237 21..98 144 37.2 Plus
Cpr65Au-PB 106 CG18778-PB 7..101 3..91 141 37.5 Plus
Cpr65Au-PA 106 CG18778-PA 7..101 3..91 141 37.5 Plus
Cpr78Cc-PA 119 CG7658-PA 23..98 17..98 140 38.4 Plus
Cpr67Fa1-PA 134 CG7941-PA 3..97 2..96 139 35.9 Plus
Cpr67Fa2-PA 134 CG18349-PA 27..97 19..96 136 39.2 Plus
Cpr49Ae-PA 134 CG8505-PA 30..109 21..96 133 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12628-PA 104 GI12628-PA 1..104 1..98 334 65.4 Plus
Dmoj\GI12627-PA 112 GI12627-PA 1..109 1..98 311 60.6 Plus
Dmoj\GI12695-PA 100 GI12695-PA 27..100 25..98 241 60.8 Plus
Dmoj\GI12696-PA 100 GI12696-PA 1..100 1..98 237 59 Plus
Dmoj\GI12618-PA 110 GI12618-PA 24..104 16..96 236 51.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15521-PA 102 GL15521-PA 1..102 1..99 296 55.9 Plus
Dper\GL15520-PA 104 GL15520-PA 1..101 1..98 287 64.4 Plus
Dper\GL15517-PA 104 GL15517-PA 1..101 1..98 287 64.4 Plus
Dper\GL15557-PA 109 GL15557-PA 27..103 20..96 264 62.3 Plus
Dper\GL15516-PA 102 GL15516-PA 1..102 1..99 253 56.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23852-PA 104 GA23852-PA 1..101 1..98 294 66.3 Plus
Dpse\GA23851-PA 104 GA23851-PA 1..101 1..98 290 65.3 Plus
Dpse\GA19982-PA 109 GA19982-PA 27..103 20..96 264 62.3 Plus
Dpse\GA19981-PA 108 GA19981-PA 1..106 1..98 251 48.1 Plus
Dpse\GA23853-PA 102 GA23853-PA 1..101 1..98 250 56.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13865-PA 101 GM13865-PA 1..98 1..98 446 82.7 Plus
Dsec\GM13866-PA 105 GM13866-PA 24..102 20..98 275 64.6 Plus
Dsec\GM13868-PA 105 GM13868-PA 24..102 20..98 275 64.6 Plus
Dsec\GM14760-PA 109 GM14760-PA 25..103 18..96 265 62 Plus
Dsec\GM19678-PA 109 GM19678-PA 25..103 18..96 265 62 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14953-PA 101 GD14953-PA 1..98 1..98 452 83.7 Plus
Dsim\GD13150-PA 105 GD13150-PA 28..102 24..98 286 69.3 Plus
Dsim\GD13151-PA 105 GD13151-PA 28..102 24..98 286 69.3 Plus
Dsim\GD13153-PA 105 GD13153-PA 24..102 20..98 272 64.6 Plus
Dsim\GD13939-PA 107 GD13939-PA 21..101 16..96 270 61.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12680-PA 105 GJ12680-PA 1..102 1..98 281 63.7 Plus
Dvir\GJ12681-PA 105 GJ12681-PA 1..102 1..98 281 63.7 Plus
Dvir\GJ12742-PA 102 GJ12742-PA 7..102 3..98 278 53.1 Plus
Dvir\GJ12752-PA 103 GJ12752-PA 1..100 1..98 274 61 Plus
Dvir\GJ12738-PA 110 GJ12738-PA 14..108 4..98 271 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16916-PA 101 GK16916-PA 1..101 1..98 351 68.3 Plus
Dwil\GK16914-PA 104 GK16914-PA 1..101 1..98 335 66.3 Plus
Dwil\GK16921-PA 105 GK16921-PA 1..102 1..98 309 58.8 Plus
Dwil\GK17269-PA 108 GK17269-PA 1..102 1..96 300 56.9 Plus
Dwil\GK16918-PA 105 GK16918-PA 1..104 1..98 291 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21545-PA 104 GE21545-PA 1..101 1..98 266 52.5 Plus
Dyak\GE21544-PA 118 GE21544-PA 15..115 1..98 262 52.5 Plus
Dyak\GE20504-PA 104 GE20504-PA 1..101 1..98 258 51.5 Plus
Dyak\GE20505-PA 118 GE20505-PA 15..115 1..98 257 51.5 Plus
Dyak\GE21543-PA 108 GE21543-PA 23..104 15..96 255 53.7 Plus

RT03322.hyp Sequence

Translation from 1 to 297

> RT03322.hyp
MKFLIVFVAIFAFALANEAQIINLESDVGPENFQWSFETSDGQAANAKGQ
LKYPNTDHESLAVQGSFRFVADDGQTYEVNYIADENGFQPQGAHLPVAS

RT03322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ae-PA 99 CG10529-PA 1..99 1..99 513 100 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..102 1..98 349 67.6 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..102 1..98 349 67.6 Plus
Lcp65Ag3-PA 105 CG18779-PA 1..102 1..98 346 66.7 Plus
Lcp65Af-PA 100 CG10533-PA 1..97 1..98 327 65.3 Plus