Clone RT03813 Report

Search the DGRC for RT03813

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:38
Well:13
Vector:pCR2.1
Associated Gene/TranscriptLysB-RA
Protein status:RT03813.pep: gold
Sequenced Size:423

Clone Sequence Records

RT03813.complete Sequence

423 bp assembled on 2009-11-16

GenBank Submission: BT120374.1

> RT03813.complete
ATGAAGGCTTTCATCGTTCTGGTTGCCCTGGCTCTGGCCGCTCCTGCTCT
TGGTCGCACCATGGACCGTTGCTCCCTGGCCCGGGAGATGTCCAACCTGG
GCGTTCCTCGTGACCAATTGGCTCGTTGGGCCTGCATTGCCGAGCACGAG
TCCTCCTACCGCACCGGAGTGGTTGGTCCCGAGAACTACAACGGCTCCAA
CGACTACGGAATCTTCCAGATCAACGACTACTACTGGTGCGCTCCTCCCA
GCGGTCGCTTCTCCTACAATGAGTGCGGGTTGAGCTGCAATGCCCTCTTG
ACCGACGACATCACCCACTCCGTCCGTTGTGCCCAGAAGGTCCTCAGCCA
GCAGGGATGGTCCGCCTGGTCCACCTGGCACTACTGCAGCGGATGGTTGC
CGTCCATCGATGACTGCTTCTAA

RT03813.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
LysB-RA 498 LysB-RA 24..446 1..423 2115 100 Plus
LysE-RA 490 LysE-RA 29..451 1..423 1890 96.4 Plus
LysD-RA 480 LysD-RA 20..442 1..423 1875 96.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1206916..1207336 1..421 2075 99.5 Plus
chr3L 24539361 chr3L 1212468..1212888 1..421 1955 97.6 Plus
chr3L 24539361 chr3L 1210263..1210684 421..1 1880 96.9 Minus
chr3L 24539361 chr3L 1227284..1227704 1..421 955 82.8 Plus
chr3L 24539361 chr3L 1209991..1210232 1..242 910 91.7 Plus
chr3L 24539361 chr3L 1217799..1218120 394..73 665 80.4 Minus
chr3L 24539361 chr3L 1194409..1194776 419..52 640 78.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1207394..1207816 1..423 2115 100 Plus
3L 28110227 3L 1212952..1213374 1..423 1890 96.5 Plus
3L 28110227 3L 1210755..1211177 423..1 1875 96.2 Minus
3L 28110227 3L 1227772..1228194 1..423 980 83.1 Plus
3L 28110227 3L 1210485..1210726 1..242 895 91.3 Plus
3L 28110227 3L 1218286..1218607 394..73 680 80.7 Minus
3L 28110227 3L 1194874..1195241 419..52 625 78 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1207394..1207816 1..423 2115 100 Plus
3L 28103327 3L 1212952..1213374 1..423 1890 96.4 Plus
3L 28103327 3L 1210755..1211177 423..1 1875 96.2 Minus
3L 28103327 3L 1228023..1228194 252..423 695 93.6 Plus
3L 28103327 3L 1218286..1218607 394..73 680 80.7 Minus
3L 28103327 3L 1210614..1210726 130..242 550 99.1 Plus
3L 28103327 3L 1210485..1210600 1..116 415 90.5 Plus
3L 28103327 3L 1195120..1195241 173..52 310 83.6 Minus
3L 28103327 3L 1194874..1195034 419..259 295 78.8 Minus
3L 28103327 3L 1227901..1228014 127..240 255 81.5 Plus
Blast to na_te.dros performed on 2019-03-16 21:30:19 has no hits.

RT03813.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:31:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1206916..1207338 1..423 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-16 12:32:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 1..421 1..421 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:26 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 1..423 1..423 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:00:01 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 1..423 1..423 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:08 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 1..423 1..423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-16 12:32:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 24..444 1..421 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:26 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 24..446 1..423 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:01 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 24..446 1..423 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:08 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
LysB-RA 24..446 1..423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1207394..1207816 1..423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1207394..1207816 1..423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:31:06 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1207394..1207816 1..423 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:01 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1207394..1207816 1..423 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:11:49 Download gff for RT03813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1207394..1207816 1..423 100   Plus

RT03813.pep Sequence

Translation from 0 to 422

> RT03813.pep
MKAFIVLVALALAAPALGRTMDRCSLAREMSNLGVPRDQLARWACIAEHE
SSYRTGVVGPENYNGSNDYGIFQINDYYWCAPPSGRFSYNECGLSCNALL
TDDITHSVRCAQKVLSQQGWSAWSTWHYCSGWLPSIDDCF*

RT03813.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10072-PA 140 GF10072-PA 1..140 1..140 748 99.3 Plus
Dana\GF24436-PA 140 GF24436-PA 1..140 1..140 739 97.9 Plus
Dana\GF10073-PA 140 GF10073-PA 1..140 1..140 618 90 Plus
Dana\GF24437-PA 140 GF24437-PA 1..140 1..140 594 85.8 Plus
Dana\GF10070-PA 141 GF10070-PA 1..141 1..140 560 71.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14617-PA 140 GG14617-PA 1..140 1..140 686 95.7 Plus
Dere\GG19822-PA 140 GG19822-PA 1..140 1..140 686 95.7 Plus
Dere\GG14762-PA 140 GG14762-PA 1..140 1..140 686 95.7 Plus
Dere\GG14759-PA 140 GG14759-PA 1..140 1..140 686 95.7 Plus
Dere\GG19823-PA 140 GG19823-PA 1..140 1..140 686 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15486-PA 140 GH15486-PA 1..140 1..140 608 85.7 Plus
Dgri\GH15485-PA 140 GH15485-PA 1..140 1..140 608 85.7 Plus
Dgri\GH15987-PA 140 GH15987-PA 1..140 1..140 601 85 Plus
Dgri\GH15989-PA 140 GH15989-PA 1..140 1..140 601 85 Plus
Dgri\GH15988-PA 143 GH15988-PA 1..143 1..140 514 70.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
LysB-PB 140 CG1179-PB 1..140 1..140 779 100 Plus
LysB-PA 140 CG1179-PA 1..140 1..140 779 100 Plus
LysD-PA 140 CG9118-PA 1..140 1..140 770 98.6 Plus
LysE-PA 140 CG1180-PA 1..140 1..140 762 97.1 Plus
LysS-PA 140 CG1165-PA 1..140 1..140 630 81.6 Plus
LysX-PA 142 CG9120-PA 1..141 1..140 605 77.3 Plus
LysP-PA 141 CG9116-PA 1..141 1..140 601 77.3 Plus
CG30062-PB 171 CG30062-PB 23..151 15..140 342 48.1 Plus
CG7798-PA 148 CG7798-PA 7..140 5..140 337 46 Plus
CG8492-PD 1360 CG8492-PD 438..552 18..127 234 41 Plus
CG8492-PD 1360 CG8492-PD 599..724 22..140 228 38.3 Plus
CG8492-PD 1360 CG8492-PD 6..133 7..129 219 37.4 Plus
CG8492-PD 1360 CG8492-PD 184..297 18..126 200 35.3 Plus
CG11159-PA 146 CG11159-PA 12..146 4..139 190 34.5 Plus
CG16756-PA 152 CG16756-PA 34..137 23..129 174 35.8 Plus
CG16799-PB 179 CG16799-PB 17..145 1..126 162 30.1 Plus
CG16799-PA 179 CG16799-PA 17..145 1..126 162 30.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16762-PA 140 GI16762-PA 1..140 1..140 622 87.1 Plus
Dmoj\GI16761-PA 140 GI16761-PA 1..140 1..140 619 88.6 Plus
Dmoj\GI16643-PA 140 GI16643-PA 1..140 1..140 619 88.6 Plus
Dmoj\GI16637-PA 140 GI16637-PA 1..140 1..140 613 85.7 Plus
Dmoj\GI16638-PA 140 GI16638-PA 1..140 1..140 613 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16159-PA 140 GL16159-PA 1..140 1..140 657 93.6 Plus
Dper\GL16083-PA 140 GL16083-PA 1..140 1..140 657 93.6 Plus
Dper\GL14512-PA 140 GL14512-PA 1..140 1..140 657 93.6 Plus
Dper\GL16158-PA 170 GL16158-PA 1..127 1..127 647 95.3 Plus
Dper\GL16156-PA 140 GL16156-PA 1..140 1..140 644 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28405-PA 140 GA28405-PA 1..140 1..140 714 93.6 Plus
Dpse\GA28406-PA 140 GA28406-PA 1..140 1..140 665 95.7 Plus
Dpse\GA28485-PA 140 GA28485-PA 1..140 1..140 664 95 Plus
Dpse\GA28409-PA 140 GA28409-PA 1..140 1..140 657 93.6 Plus
Dpse\GA28483-PA 140 GA28483-PA 1..140 1..140 646 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14382-PA 140 GM14382-PA 1..140 1..140 751 100 Plus
Dsec\GM14380-PA 140 GM14380-PA 1..140 1..140 729 96.4 Plus
Dsec\GM14229-PA 140 GM14229-PA 1..140 1..140 729 96.4 Plus
Dsec\GM14378-PA 140 GM14378-PA 1..140 1..140 687 95.7 Plus
Dsec\GM14233-PA 149 GM14233-PA 44..130 54..140 388 80.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13594-PA 140 GD13594-PA 1..140 1..140 751 100 Plus
Dsim\GD13593-PA 140 GD13593-PA 1..140 1..140 687 95.7 Plus
Dsim\GD17618-PA 140 GD17618-PA 1..140 1..140 604 80.9 Plus
Dsim\GD17617-PA 140 GD17617-PA 1..140 1..140 604 80.9 Plus
Dsim\GD13493-PA 160 GD13493-PA 1..141 1..140 599 78 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12508-PA 140 GJ12508-PA 1..140 1..140 698 92.1 Plus
Dvir\GJ12507-PA 140 GJ12507-PA 1..140 1..140 698 92.1 Plus
Dvir\GJ12895-PA 140 GJ12895-PA 1..140 1..140 682 90 Plus
Dvir\GJ12893-PA 140 GJ12893-PA 1..140 1..140 666 86.4 Plus
Dvir\GJ12894-PA 143 GJ12894-PA 1..142 1..140 603 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21106-PA 141 GK21106-PA 15..141 14..140 654 93.7 Plus
Dwil\GK21095-PA 141 GK21095-PA 15..141 14..140 654 93.7 Plus
Dwil\GK12154-PA 141 GK12154-PA 1..141 1..140 649 90.1 Plus
Dwil\GK21084-PA 141 GK21084-PA 1..141 1..140 649 90.1 Plus
Dwil\GK12260-PA 141 GK12260-PA 1..141 1..140 649 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20977-PA 140 GE20977-PA 1..140 1..140 686 95.7 Plus
Dyak\GE21124-PA 140 GE21124-PA 1..140 1..140 686 95.7 Plus
Dyak\GE21123-PA 140 GE21123-PA 1..140 1..140 682 95 Plus
Dyak\GE21125-PA 140 GE21125-PA 1..140 1..140 679 94.3 Plus
Dyak\GE20981-PA 142 GE20981-PA 1..141 1..140 609 81.6 Plus

RT03813.hyp Sequence

Translation from 1 to 420

> RT03813.hyp
MKAFIVLVALALAAPALGRTMDRCSLAREMSNLGVPRDQLARWACIAEHE
SSYRTGVVGPENYNGSNDYGIFQINDYYWCAPPSGRFSYNECGLSCNALL
TDDITHSVRCAQKVLSQQGWSAWSTWHYCSGWLPSIDDCF

RT03813.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
LysB-PB 140 CG1179-PB 1..140 1..140 779 100 Plus
LysB-PA 140 CG1179-PA 1..140 1..140 779 100 Plus
LysD-PA 140 CG9118-PA 1..140 1..140 770 98.6 Plus
LysE-PA 140 CG1180-PA 1..140 1..140 762 97.1 Plus
LysC-PA 140 CG9111-PA 1..140 1..140 761 97.1 Plus