RT04080.complete Sequence
249 bp assembled on 2009-12-10
GenBank Submission: BT100328.1
> RT04080.complete
ATGAGAAAGGTCGTGTTAATTTGCTTACTAGCGAGATTTAGCATCGGATT
TCCCCAGGCTCACATATACAAGCCACTTCTTTGTGAGGAAACCAATGCTA
ATATAACCAGATCTTCGCTTCTTGCACAATGTGTAAATCAGGACGAATGT
TTTATAAACAGACCAGTAGGTCTATGCCCCAAACTTGAAGTTTGCTGCGT
TAAAAAACAAGATTTTAACATTGACGAGGTTGAATATATGGAAGATTAA
RT04080.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp77F-RA | 404 | Sfp77F-RA | 38..286 | 1..249 | 1245 | 100 | Plus |
Sfp77F.a | 1093 | Sfp77F.a | 20..268 | 1..249 | 1245 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 20886116..20886283 | 247..80 | 840 | 100 | Minus |
chr3L | 24539361 | chr3L | 20886341..20886419 | 79..1 | 395 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20897093..20897262 | 249..80 | 850 | 100 | Minus |
3L | 28110227 | 3L | 20897320..20897398 | 79..1 | 395 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 20890193..20890362 | 249..80 | 850 | 100 | Minus |
3L | 28103327 | 3L | 20890420..20890498 | 79..1 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 14:47:44 has no hits.
RT04080.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:48:42 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 20886114..20886283 | 80..249 | 100 | <- | Minus |
chr3L | 20886341..20886419 | 1..79 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-12-10 11:27:35 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..247 | 1..247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:31 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..249 | 1..249 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:35 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..249 | 1..249 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:35:27 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..249 | 1..249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-10 11:27:35 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..247 | 1..247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:31 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 1..249 | 1..249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:35 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 20..268 | 1..249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:27 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp77F-RA | 20..268 | 1..249 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:48:42 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20897093..20897262 | 80..249 | 100 | <- | Minus |
3L | 20897320..20897398 | 1..79 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:48:42 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20897093..20897262 | 80..249 | 100 | <- | Minus |
3L | 20897320..20897398 | 1..79 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:48:42 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20897093..20897262 | 80..249 | 100 | <- | Minus |
3L | 20897320..20897398 | 1..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:35 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20890420..20890498 | 1..79 | 100 | | Minus |
arm_3L | 20890193..20890362 | 80..249 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:12:47 Download gff for
RT04080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20890193..20890362 | 80..249 | 100 | <- | Minus |
3L | 20890420..20890498 | 1..79 | 100 | | Minus |
RT04080.pep Sequence
Translation from 0 to 248
> RT04080.pep
MRKVVLICLLARFSIGFPQAHIYKPLLCEETNANITRSSLLAQCVNQDEC
FINRPVGLCPKLEVCCVKKQDFNIDEVEYMED*
RT04080.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp77F-PB | 82 | CG42482-PB | 1..82 | 1..82 | 439 | 100 | Plus |
Sfp77F-PA | 82 | CG42482-PA | 1..82 | 1..82 | 439 | 100 | Plus |
RT04080.hyp Sequence
Translation from 1 to 246
> RT04080.hyp
MRKVVLICLLARFSIGFPQAHIYKPLLCEETNANITRSSLLAQCVNQDEC
FINRPVGLCPKLEVCCVKKQDFNIDEVEYMED
RT04080.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp77F-PB | 82 | CG42482-PB | 1..82 | 1..82 | 439 | 100 | Plus |
Sfp77F-PA | 82 | CG42482-PA | 1..82 | 1..82 | 439 | 100 | Plus |