BDGP Sequence Production Resources |
Search the DGRC for RT04180
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 41 |
Well: | 80 |
Vector: | pCR2.1 |
Associated Gene/Transcript | ETH-RA |
Protein status: | RT04180.pep: gold |
Sequenced Size: | 612 |
612 bp assembled on 2009-12-10
GenBank Submission: BT120013.1
> RT04180.complete ATGAGAATCATAACAGTCCTGTCTGTTTCGCTCTTGGTGGGTCTTGTGGC CATAAGCCAGGCAGACGACAGTAGTCCAGGATTCTTCCTAAAGATCACCA AGAACGTACCGCGGCTGGGCAAGCGAGGCGAGAACTTTGCCATAAAGAAC CTAAAGACCATTCCTCGCATAGGACGCAGTGAGCACAGCTCTGTTACTCC TCTGCTGGCGTGGCTATGGGATTTGGAAACGAGTCCAAGCAAGCGGCGCT TACCCGCAGGGGAATCCCCAGCGAAGGAGCAGGAACTTAACGTGGTGCAG CCCGTCAACTCGAATACGCTCCTTGAGCTGCTTGACAACAACGCTATTCC CAGCGAGCAGGTGAAGTTCGTCCACTGGAAGGATTTCGATCGTGCCCTCC AGGCAGATGCCGATCTGTACAGCAAGGTTATCCAGCTGGGACGCCGTCCG GACCAGCACCTCAAGCAGACTCTCAGCTTTGGCAGCTTCGTTCCCATCTT CGGCGACGAGCAGAATCCGGACTTTATGATGTACAAAAACAACGAGGATC AGGAACTTTACGGCGGGGGAAATCGCTACGATCGCCAATTCCTCAAGTAC AACATCCTGTGA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ETH.a | 1535 | ETH.a | 217..828 | 1..612 | 3060 | 100 | Plus |
ETH-RA | 1107 | ETH-RA | 252..863 | 1..612 | 3060 | 100 | Plus |
nc_9335.a | 1392 | nc_9335.a | 414..834 | 607..187 | 2105 | 100 | Minus |
nc_9335.a | 1392 | nc_9335.a | 893..1078 | 186..1 | 930 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20680730..20681154 | 187..611 | 99 | <- | Minus |
chr2R | 20681213..20681398 | 1..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..611 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..611 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..612 | 1..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..612 | 1..612 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..611 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 1..611 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 25..635 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ETH-RA | 25..635 | 1..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24794790..24795214 | 187..611 | 100 | <- | Minus |
2R | 24795273..24795458 | 1..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24794790..24795214 | 187..611 | 100 | <- | Minus |
2R | 24795273..24795458 | 1..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24794790..24795214 | 187..611 | 100 | <- | Minus |
2R | 24795273..24795458 | 1..186 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20682796..20682981 | 1..186 | 100 | Minus | |
arm_2R | 20682313..20682737 | 187..611 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24796007..24796431 | 187..611 | 100 | <- | Minus |
2R | 24796490..24796675 | 1..186 | 100 | Minus |
Translation from 0 to 611
> RT04180.pep MRIITVLSVSLLVGLVAISQADDSSPGFFLKITKNVPRLGKRGENFAIKN LKTIPRIGRSEHSSVTPLLAWLWDLETSPSKRRLPAGESPAKEQELNVVQ PVNSNTLLELLDNNAIPSEQVKFVHWKDFDRALQADADLYSKVIQLGRRP DQHLKQTLSFGSFVPIFGDEQNPDFMMYKNNEDQELYGGGNRYDRQFLKY NIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11539-PA | 204 | GF11539-PA | 19..202 | 19..201 | 705 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19887-PA | 203 | GG19887-PA | 1..203 | 1..203 | 1027 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21534-PA | 214 | GH21534-PA | 6..214 | 4..203 | 623 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ETH-PA | 203 | CG18105-PA | 1..203 | 1..203 | 1049 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19506-PA | 205 | GI19506-PA | 1..205 | 1..203 | 660 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17694-PA | 206 | GL17694-PA | 17..206 | 17..203 | 739 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14795-PA | 206 | GA14795-PA | 17..206 | 17..203 | 731 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11787-PA | 203 | GM11787-PA | 1..203 | 1..203 | 1047 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24915-PA | 203 | GD24915-PA | 1..203 | 1..203 | 1038 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21076-PA | 212 | GJ21076-PA | 6..212 | 4..203 | 644 | 64.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21645-PA | 205 | GK21645-PA | 1..205 | 1..203 | 668 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11411-PA | 203 | GE11411-PA | 1..203 | 1..203 | 1015 | 93.6 | Plus |
Translation from 1 to 609
> RT04180.hyp MRIITVLSVSLLVGLVAISQADDSSPGFFLKITKNVPRLGKRGENFAIKN LKTIPRIGRSEHSSVTPLLAWLWDLETSPSKRRLPAGESPAKEQELNVVQ PVNSNTLLELLDNNAIPSEQVKFVHWKDFDRALQADADLYSKVIQLGRRP DQHLKQTLSFGSFVPIFGDEQNPDFMMYKNNEDQELYGGGNRYDRQFLKY NIL
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ETH-PA | 203 | CG18105-PA | 1..203 | 1..203 | 1049 | 100 | Plus |