Clone RT06062 Report

Search the DGRC for RT06062

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:60
Well:62
Vector:pCR2.1
Associated Gene/Transcriptfd64A-RA
Protein status:RT06062.pep: gold
Sequenced Size:1098

Clone Sequence Records

RT06062.complete Sequence

1098 bp assembled on 2010-02-26

GenBank Submission: BT120383.1

> RT06062.complete
ATGTTACCCTCTTGCTATGCCAATGGATCGATGCTGCCGGATAATGAGGA
GCTGGTCAACTCCATGCTAGCGAATCCGGATTATCTCAGGACCCAGGTGT
CACCCAATCCGCTGGCTCCAAGTGCCGTCGGAGGTGCGGGCATGGAGGGT
CTGATGTGCGGATCGTTTTCACCGGCCTTCTACTACCAGGGCATCGATAG
CTTTCTGGCCCTGCACAACAACATCTGGGGATTGCCTATATCCTTTCTGC
ACAACTCCCATCGACCGGAAAAGCCTCCTTTCTCCTACATTGCCCTCATC
GCCATGGCCATCAGCAGTGCACCCAACCAGCGACTGACCCTCAGTGGAAT
CTACAAGTTTATCATGGATAAATTCCCATATTACAGGGAGAACAAGCAGG
GCTGGCAGAACTCCATTCGCCACAATCTGTCCCTCAACGACTGCTTCGTG
AAGATTCCGCGGGACAAGAACACAATCGAGGATAACGACAGTGCTGGGAA
GGGAAGCTACTGGATGCTGGACTCATCGGCATCGGACATGTTCGAACAGG
GAAACTACCGCCGGAGGAGAACGCGCAGGCAGAGGCACTGTGGCCATCCA
AATCGCTACGAGAGGGAATCGGGAAAGGATTCAAATGATGGCAACAGTAG
TGCAGCAGAGATTCGCTCGCCCAGCGAACCGCTGAGTGACTTCGATATCT
TCTGCAACGAGCGGCCCAATTACTCCGACAGGATTACGGATCTGCACAGG
CAGTACTTGTCCGTATCCCTGGGCTTCAACAGTCTGTTCAACAACGAGGC
CCGCGGACTCCGACCACTGCCCGAGATCAGGGAATGCCCAGACGATGTGG
ACGCCTCGTCCAGTTCCAGCAAAGCAATGCAAAGTTCCATGGAACTGCAC
GAGGAGCTACATTCGCCGAGCGCCTTTACTCCTCCTCTCAATCGACGGGA
AACCTCGTCATCGGGTGCACCTGTCCTTGCCGAAGCTTTTAATGGCATCA
AGGATGTGGTGGATGCACCTGGGAGCAGTCCAGTGGCCAGCAGCAACCGA
TCAAAGACCACGCTGTTTACCATCGACAATATCATTGGCAAGCCATAA

RT06062.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
fd64A-RA 1626 fd64A-RA 369..1466 1..1098 5490 100 Plus
croc-RA 2522 croc-RA 634..752 335..453 250 80.6 Plus
slp1-RA 1458 slp1-RA 559..649 368..458 230 83.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4020093..4020563 626..1096 2355 100 Plus
chr3L 24539361 chr3L 4018480..4018850 1..371 1855 100 Plus
chr3L 24539361 chr3L 4019783..4020039 372..628 1285 100 Plus
chr3L 24539361 chr3L 21464754..21464937 453..270 290 77.2 Minus
chr2L 23010047 chr2L 3825761..3825851 368..458 230 83.5 Plus
chr3R 27901430 chr3R 24406772..24406881 458..349 190 78.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4020707..4021179 626..1098 2365 100 Plus
3L 28110227 3L 4019094..4019464 1..371 1855 100 Plus
3L 28110227 3L 4020397..4020653 372..628 1285 100 Plus
3L 28110227 3L 21475805..21475988 453..270 290 77.2 Minus
2L 23513712 2L 3826238..3826328 368..458 230 83.5 Plus
3R 32079331 3R 28583739..28583848 458..349 190 78.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4020707..4021179 626..1098 2365 100 Plus
3L 28103327 3L 4019094..4019464 1..371 1855 100 Plus
3L 28103327 3L 4020397..4020653 372..628 1285 100 Plus
3L 28103327 3L 21468905..21469023 453..335 250 80.6 Minus
2L 23513712 2L 3826238..3826328 368..458 230 83.5 Plus
3R 31820162 3R 28324570..28324679 458..349 190 78.1 Minus
Blast to na_te.dros performed on 2019-03-16 04:31:37 has no hits.

RT06062.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:32:16 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4018480..4018850 1..371 100 -> Plus
chr3L 4019783..4020038 372..627 100 -> Plus
chr3L 4020095..4020565 628..1098 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:52:44 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:48 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1098 1..1098 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:32:47 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1098 1..1098 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:42:36 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1098 1..1098 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:52:44 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:48 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 1..1098 1..1098 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:47 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 175..1272 1..1098 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:42:36 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
fd64A-RA 175..1272 1..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:16 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4019094..4019464 1..371 100 -> Plus
3L 4020397..4020652 372..627 100 -> Plus
3L 4020709..4021179 628..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:16 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4019094..4019464 1..371 100 -> Plus
3L 4020397..4020652 372..627 100 -> Plus
3L 4020709..4021179 628..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:32:16 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4019094..4019464 1..371 100 -> Plus
3L 4020397..4020652 372..627 100 -> Plus
3L 4020709..4021179 628..1098 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:47 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4019094..4019464 1..371 100 -> Plus
arm_3L 4020397..4020652 372..627 100 -> Plus
arm_3L 4020709..4021179 628..1098 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:18 Download gff for RT06062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4020397..4020652 372..627 100 -> Plus
3L 4020709..4021179 628..1098 100   Plus
3L 4019094..4019464 1..371 100 -> Plus

RT06062.pep Sequence

Translation from 0 to 1097

> RT06062.pep
MLPSCYANGSMLPDNEELVNSMLANPDYLRTQVSPNPLAPSAVGGAGMEG
LMCGSFSPAFYYQGIDSFLALHNNIWGLPISFLHNSHRPEKPPFSYIALI
AMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV
KIPRDKNTIEDNDSAGKGSYWMLDSSASDMFEQGNYRRRRTRRQRHCGHP
NRYERESGKDSNDGNSSAAEIRSPSEPLSDFDIFCNERPNYSDRITDLHR
QYLSVSLGFNSLFNNEARGLRPLPEIRECPDDVDASSSSSKAMQSSMELH
EELHSPSAFTPPLNRRETSSSGAPVLAEAFNGIKDVVDAPGSSPVASSNR
SKTTLFTIDNIIGKP*

RT06062.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25022-PA 371 GF25022-PA 1..371 1..365 1451 77.7 Plus
Dana\GF23559-PA 508 GF23559-PA 63..159 84..186 342 58.3 Plus
Dana\GF17887-PA 374 GF17887-PA 12..112 90..196 341 58.9 Plus
Dana\GF15039-PA 470 GF15039-PA 192..294 90..195 339 60.6 Plus
Dana\GF17888-PA 272 GF17888-PA 12..108 90..192 333 59.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15176-PA 364 GG15176-PA 1..364 1..365 1719 92.6 Plus
Dere\GG11359-PA 373 GG11359-PA 12..112 90..196 343 58.9 Plus
Dere\GG13233-PA 507 GG13233-PA 63..159 84..186 342 58.3 Plus
Dere\GG11360-PA 265 GG11360-PA 6..102 90..192 339 60.2 Plus
Dere\GG24972-PA 452 GG24972-PA 179..281 90..195 337 60.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15773-PA 350 GH15773-PA 1..349 1..364 1049 62.2 Plus
Dgri\GH18035-PA 395 GH18035-PA 12..122 90..206 342 55.6 Plus
Dgri\GH15375-PA 508 GH15375-PA 63..159 84..186 342 58.3 Plus
Dgri\GH18036-PA 294 GH18036-PA 5..113 83..196 340 55.7 Plus
Dgri\GH11194-PA 478 GH11194-PA 208..310 90..195 337 60.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
FoxL1-PB 365 CG1132-PB 1..365 1..365 1933 100 Plus
FoxL1-PA 365 CG1132-PA 1..365 1..365 1933 100 Plus
croc-PA 508 CG5069-PA 63..165 84..192 353 58.7 Plus
fd96Ca-PB 372 CG11921-PB 8..112 86..196 333 57.7 Plus
fd96Ca-PA 372 CG11921-PA 8..112 86..196 333 57.7 Plus
slp2-PA 451 CG2939-PA 179..281 90..195 329 60.6 Plus
fd59A-PA 456 CG3668-PA 85..183 91..195 327 57.1 Plus
fd96Cb-PA 271 CG11922-PA 5..108 83..192 326 57.3 Plus
fkh-PD 510 CG10002-PD 159..305 38..192 322 45.2 Plus
fkh-PB 510 CG10002-PB 159..305 38..192 322 45.2 Plus
fkh-PA 510 CG10002-PA 159..305 38..192 322 45.2 Plus
fkh-PE 518 CG10002-PE 159..305 38..192 322 45.2 Plus
fkh-PC 692 CG10002-PC 159..305 38..192 322 45.2 Plus
slp1-PA 322 CG16738-PA 119..221 90..195 309 54.1 Plus
FoxK-PK 740 CG11799-PK 441..543 81..192 279 50.4 Plus
FoxK-PP 745 CG11799-PP 447..549 81..192 279 50.4 Plus
FoxK-PO 745 CG11799-PO 446..548 81..192 279 50.4 Plus
FoxK-PJ 746 CG11799-PJ 447..549 81..192 279 50.4 Plus
FoxK-PI 746 CG11799-PI 447..549 81..192 279 50.4 Plus
FoxK-PH 746 CG11799-PH 447..549 81..192 279 50.4 Plus
FoxK-PG 746 CG11799-PG 447..549 81..192 279 50.4 Plus
FoxK-PN 760 CG11799-PN 447..549 81..192 279 50.4 Plus
fd19B-PA 260 CG9571-PA 58..197 91..230 273 43.2 Plus
fd102C-PA 599 CG11152-PA 129..230 91..198 273 48.2 Plus
bin-PA 676 CG18647-PA 306..440 86..217 259 38.1 Plus
fd3F-PC 744 CG44123-PC 395..549 85..232 194 32.5 Plus
FoxP-PC 520 CG43067-PC 328..459 91..247 193 31.2 Plus
CHES-1-like-PC 1267 CG12690-PC 629..776 6..174 193 32.7 Plus
CHES-1-like-PD 1268 CG12690-PD 629..776 6..174 193 32.7 Plus
CHES-1-like-PB 1268 CG12690-PB 629..776 6..174 193 32.7 Plus
CHES-1-like-PA 1268 CG12690-PA 629..776 6..174 193 32.7 Plus
jumu-PA 719 CG4029-PA 411..564 91..247 186 31.7 Plus
foxo-PC 613 CG3143-PC 88..202 84..209 185 35.9 Plus
foxo-PB 613 CG3143-PB 88..202 84..209 185 35.9 Plus
foxo-PH 619 CG3143-PH 88..202 84..209 185 35.9 Plus
foxo-PG 622 CG3143-PG 88..202 84..209 185 35.9 Plus
foxo-PF 622 CG3143-PF 88..202 84..209 185 35.9 Plus
FoxP-PD 442 CG43067-PD 328..396 91..159 176 42 Plus
CG32006-PA 443 CG32006-PA 145..217 90..173 157 44 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12553-PA 349 GI12553-PA 3..349 12..365 1137 66.5 Plus
Dmoj\GI12979-PA 505 GI12979-PA 63..159 84..186 342 58.3 Plus
Dmoj\GI23781-PA 391 GI23781-PA 12..122 90..206 340 55.6 Plus
Dmoj\GI18115-PA 488 GI18115-PA 193..295 90..195 339 60.6 Plus
Dmoj\GI20546-PA 481 GI20546-PA 94..192 91..195 337 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16060-PA 369 GL16060-PA 9..369 17..365 1257 71.6 Plus
Dper\GL15055-PA 423 GL15055-PA 63..159 84..186 342 58.3 Plus
Dper\GL21898-PA 379 GL21898-PA 12..112 90..196 341 58.9 Plus
Dper\GL18683-PA 469 GL18683-PA 195..297 90..195 339 60.6 Plus
Dper\GL10130-PA 457 GL10130-PA 73..171 91..195 336 57.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10915-PA 377 GA10915-PA 1..377 1..365 1355 73 Plus
Dpse\GA18636-PA 523 GA18636-PA 63..159 84..186 341 58.3 Plus
Dpse\GA15533-PA 471 GA15533-PA 197..299 90..195 340 60.6 Plus
Dpse\GA17601-PA 457 GA17601-PA 73..171 91..195 336 57.1 Plus
Dpse\GA10002-PB 481 GA10002-PB 181..276 91..192 333 59.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14607-PA 368 GM14607-PA 1..368 1..365 1779 94.6 Plus
Dsec\GM17800-PA 372 GM17800-PA 12..112 90..196 343 58.9 Plus
Dsec\GM22139-PA 507 GM22139-PA 63..159 84..186 342 58.3 Plus
Dsec\GM17802-PA 265 GM17802-PA 6..102 90..192 338 60.2 Plus
Dsec\GM18443-PA 450 GM18443-PA 178..280 90..195 337 60.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13797-PA 368 GD13797-PA 1..368 1..365 1796 95.4 Plus
Dsim\GD12117-PA 491 GD12117-PA 63..159 84..186 342 58.3 Plus
Dsim\GD11717-PA 456 GD11717-PA 85..183 91..195 335 57.1 Plus
Dsim\GD18028-PA 510 GD18028-PA 210..305 91..192 332 59.8 Plus
Dsim\GD21173-PA 265 GD21173-PA 6..102 90..192 323 57.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15456-PA 348 GJ15456-PA 1..348 1..365 1131 64.8 Plus
Dvir\GJ13122-PA 508 GJ13122-PA 63..159 84..186 342 58.3 Plus
Dvir\GJ23595-PA 392 GJ23595-PA 12..112 90..196 341 58.9 Plus
Dvir\GJ16301-PA 466 GJ16301-PA 198..300 90..195 337 60.6 Plus
Dvir\GJ22399-PA 471 GJ22399-PA 85..183 91..195 336 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17509-PA 413 GK17509-PA 1..412 1..364 1130 62.9 Plus
Dwil\GK13404-PA 389 GK13404-PA 12..112 90..196 343 58.9 Plus
Dwil\GK16995-PA 528 GK16995-PA 63..159 84..186 342 58.3 Plus
Dwil\GK15484-PA 468 GK15484-PA 137..239 90..195 340 60.6 Plus
Dwil\GK20787-PA 467 GK20787-PA 79..177 91..195 336 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21395-PA 362 GE21395-PA 1..362 1..365 1711 93.2 Plus
Dyak\GE23556-PA 374 GE23556-PA 12..112 90..196 343 58.9 Plus
Dyak\GE22970-PA 507 GE22970-PA 63..159 84..186 342 58.3 Plus
Dyak\GE18263-PA 451 GE18263-PA 178..280 90..195 339 60.6 Plus
Dyak\GE23557-PA 270 GE23557-PA 6..102 90..192 338 60.2 Plus

RT06062.hyp Sequence

Translation from 1 to 1095

> RT06062.hyp
MLPSCYANGSMLPDNEELVNSMLANPDYLRTQVSPNPLAPSAVGGAGMEG
LMCGSFSPAFYYQGIDSFLALHNNIWGLPISFLHNSHRPEKPPFSYIALI
AMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSLNDCFV
KIPRDKNTIEDNDSAGKGSYWMLDSSASDMFEQGNYRRRRTRRQRHCGHP
NRYERESGKDSNDGNSSAAEIRSPSEPLSDFDIFCNERPNYSDRITDLHR
QYLSVSLGFNSLFNNEARGLRPLPEIRECPDDVDASSSSSKAMQSSMELH
EELHSPSAFTPPLNRRETSSSGAPVLAEAFNGIKDVVDAPGSSPVASSNR
SKTTLFTIDNIIGKP

RT06062.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
fd64A-PB 365 CG1132-PB 1..365 1..365 1933 100 Plus
fd64A-PA 365 CG1132-PA 1..365 1..365 1933 100 Plus
croc-PA 508 CG5069-PA 63..165 84..192 353 58.7 Plus
fd96Ca-PB 372 CG11921-PB 8..112 86..196 333 57.7 Plus
fd96Ca-PA 372 CG11921-PA 8..112 86..196 333 57.7 Plus