Clone RT06063 Report

Search the DGRC for RT06063

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:60
Well:63
Vector:pCR2.1
Associated Gene/Transcriptfne-RA
Protein status:RT06063.pep: gold
Sequenced Size:1071

Clone Sequence Records

RT06063.complete Sequence

1071 bp assembled on 2011-07-27

GenBank Submission: BT120384.2

> RT06063.complete
ATGACCAACGCCATGGATATTGTGAAGAACGGCAGTGCCAACGGATCCGT
GGATGGCAGCAATGATGAGTCGCGCACCAATTTGATTGTCAACTATCTGC
CGCAAACCATGACGCAGGAGGAGATGCGATCGCTCTTCTCCAGCATCGGT
GAGCTCGAGAGTTGCAAACTGGTGCGTGATAAAGTCTCAGGTAATTTGGT
CTTGCCAGCATCGTTGACCGCTCTCAATCCGGCATTGCAGCAAGGTCAGA
GTCTGGGCTATGGATTTGTTAATTACGTCAGGGCCGAGGATGCTGAGAAG
GCTGTGAACACCCTGAACGGCCTGCGTTTGCAGAATAAGGTTATTAAAGT
ATCATATGCCCGTCCAAGCTCAGAATCTATTAAGGGTGCTAATTTATATG
TATCGGGTCTTCCGAAAAATCTATCACAACCAGACTTGGAGGGGATGTTT
GCTTCGTTTGGCAAAATAATTACATCTCGTATACTCTGTGATAATATTTC
TGGTCTATCGAAGGGTGTCGGTTTTATTCGCTTCGATCAGCGCAACGAAG
CCGAGCGAGCCATCCAGGAGTTGAATGGCAAGACCCCGAAAGGATATGCC
GAACCGATCACCGTCAAGTTCGCCAACAATCCGAGCAATAGCGCCAAGGC
TCAAATTGCCCCGCCCCTTACCGCCTACTTGACACCACAGGCGGCAGCGG
CCACTCGCCGTTTGGCCGGAGCTCTGCCCTCCGCCGGTCGCATTAGGTAC
TCACCGCTGGCTGGCGATCTATTGGCCAATTCGATTTTACCGGGAAATGC
CATGACTGGATCGGGATGGTGCATATTCGTCTATAACCTGGCCCCGGAGA
CCGAGGAGAACGTGCTGTGGCAGCTATTCGGGCCATTCGGTGCCGTTCAA
TCGGTGAAGGTGATCCGGGATCTGCAGACCAGCAAGTGCAAGGGATTCGG
ATTCGTGACCATGACCAACTACGATGAGGCCGTGGTGGCCATTCAGTCGC
TGAATGGTTATACCCTGGGCAATCGGGTGCTGCAGGTCAGCTTTAAGACT
AACAAGACCAAAACCACTTAG

RT06063.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
fne.g 3332 fne.g 1688..2757 1..1070 5335 99.9 Plus
fne.f 3591 fne.f 1312..2381 1..1070 5335 99.9 Plus
fne.a 2876 fne.a 1490..2559 1..1070 5335 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12836125..12836453 743..1071 1645 100 Plus
chrX 22417052 chrX 12834140..12834401 243..504 1265 98.9 Plus
chrX 22417052 chrX 12834465..12834711 502..748 1235 100 Plus
chrX 22417052 chrX 12833607..12833805 1..199 995 100 Plus
chr2L 23010047 chr2L 2962871..2963024 908..1061 395 83.8 Plus
chrX 22417052 chrX 411835..412068 1055..822 375 77.4 Minus
chr2L 23010047 chr2L 2962688..2962784 817..913 290 86.6 Plus
chrX 22417052 chrX 12834034..12834081 199..246 240 100 Plus
chr2L 23010047 chr2L 2962227..2962368 496..637 230 77.5 Plus
chrX 22417052 chrX 412755..412841 153..67 195 81.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12945162..12945490 743..1071 1645 100 Plus
X 23542271 X 12943191..12943452 243..504 1295 99.6 Plus
X 23542271 X 12943512..12943758 502..748 1235 100 Plus
X 23542271 X 12942658..12942856 1..199 995 100 Plus
2L 23513712 2L 2963223..2963376 908..1061 395 83.8 Plus
X 23542271 X 517802..518035 1055..822 375 77.4 Minus
2L 23513712 2L 2963040..2963136 817..913 275 85.6 Plus
X 23542271 X 12943085..12943132 199..246 240 100 Plus
2L 23513712 2L 2962579..2962720 496..637 230 77.5 Plus
X 23542271 X 518722..518808 153..67 195 81.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12953260..12953588 743..1071 1645 100 Plus
X 23527363 X 12951289..12951550 243..504 1295 99.6 Plus
X 23527363 X 12951610..12951856 502..748 1235 100 Plus
X 23527363 X 12950756..12950954 1..199 995 100 Plus
2L 23513712 2L 2963223..2963376 908..1061 395 83.7 Plus
X 23527363 X 525900..526020 1055..935 320 84.2 Minus
2L 23513712 2L 2963040..2963136 817..913 275 85.5 Plus
X 23527363 X 12951183..12951230 199..246 240 100 Plus
X 23527363 X 526820..526906 153..67 195 81.6 Minus
2L 23513712 2L 2962682..2962720 599..637 150 92.3 Plus
X 23527363 X 526653..526738 335..250 145 77.9 Minus
2L 23513712 2L 2961558..2961649 76..167 145 77.1 Plus
2L 23513712 2L 2962579..2962673 496..590 145 76.8 Plus
X 23527363 X 526046..526133 909..822 140 77.2 Minus
Blast to na_te.dros performed on 2019-03-15 10:51:10 has no hits.

RT06063.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:57 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12833607..12833805 1..199 100 -> Plus
chrX 12834035..12834079 200..244 100 -> Plus
chrX 12834142..12834399 245..502 98 -> Plus
chrX 12834466..12834709 503..746 100 -> Plus
chrX 12836129..12836453 747..1071 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:52:46 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RB 1..1069 1..1069 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:37 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RB 1..1071 1..1071 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:07 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RG 1..1071 1..1071 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:50 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RG 1..1071 1..1071 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:52:45 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RB 1299..2367 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:37 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RB 1306..2376 1..1071 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:07 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RG 1116..2186 1..1071 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:50 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
fne-RG 1116..2186 1..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:57 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
X 12942658..12942856 1..199 100 -> Plus
X 12943086..12943130 200..244 100 -> Plus
X 12943193..12943450 245..502 99 -> Plus
X 12943513..12943756 503..746 100 -> Plus
X 12945166..12945490 747..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:57 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
X 12942658..12942856 1..199 100 -> Plus
X 12943086..12943130 200..244 100 -> Plus
X 12943193..12943450 245..502 99 -> Plus
X 12943513..12943756 503..746 100 -> Plus
X 12945166..12945490 747..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:57 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
X 12942658..12942856 1..199 100 -> Plus
X 12943086..12943130 200..244 100 -> Plus
X 12943193..12943450 245..502 99 -> Plus
X 12943513..12943756 503..746 100 -> Plus
X 12945166..12945490 747..1071 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:07 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12837546..12837789 503..746 100 -> Plus
arm_X 12839199..12839523 747..1071 100   Plus
arm_X 12836691..12836889 1..199 100 -> Plus
arm_X 12837119..12837163 200..244 100 -> Plus
arm_X 12837226..12837483 245..502 99 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:44 Download gff for RT06063.complete
Subject Subject Range Query Range Percent Splice Strand
X 12951611..12951854 503..746 100 -> Plus
X 12950756..12950954 1..199 100 -> Plus
X 12951184..12951228 200..244 100 -> Plus
X 12951291..12951548 245..502 99 -> Plus
X 12953264..12953588 747..1071 100   Plus

RT06063.pep Sequence

Translation from 0 to 1070

> RT06063.pep
MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIG
ELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEK
AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMF
ASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYA
EPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRY
SPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQ
SVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKT
NKTKTT*

RT06063.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21392-PA 353 GF21392-PA 1..353 1..356 1844 98.9 Plus
Dana\GF14992-PA 660 GF14992-PA 95..422 23..346 1184 66.7 Plus
Dana\GF22224-PA 490 GF22224-PA 138..490 10..354 1055 59.9 Plus
Dana\GF21012-PA 757 GF21012-PA 106..283 24..219 420 41.8 Plus
Dana\GF20968-PA 379 GF20968-PA 121..303 21..219 407 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17743-PA 353 GG17743-PA 1..353 1..356 1848 99.2 Plus
Dere\GG24901-PA 446 GG24901-PA 109..446 23..356 1213 67 Plus
Dere\GG12756-PA 466 GG12756-PA 126..466 10..354 1043 59.3 Plus
Dere\GG17637-PA 335 GG17637-PA 72..260 15..219 414 39.1 Plus
Dere\GG12847-PA 513 GG12847-PA 99..276 24..219 405 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24423-PA 353 GH24423-PA 1..353 1..356 1848 99.2 Plus
Dgri\GH13638-PA 726 GH13638-PA 110..431 23..345 1207 68.4 Plus
Dgri\GH12602-PA 511 GH12602-PA 159..511 10..354 1056 59.6 Plus
Dgri\GH24172-PA 365 GH24172-PA 104..292 15..219 416 39.6 Plus
Dgri\GH12116-PA 918 GH12116-PA 174..358 20..219 411 41.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
fne-PE 356 CG4396-PE 1..356 1..356 1804 100 Plus
fne-PH 356 CG4396-PH 1..356 1..356 1804 100 Plus
fne-PG 356 CG4396-PG 1..356 1..356 1804 100 Plus
fne-PB 356 CG4396-PB 1..356 1..356 1804 100 Plus
fne-PA 356 CG4396-PA 1..356 1..356 1804 100 Plus
fne-PC 356 CG4396-PC 1..356 1..356 1804 100 Plus
fne-PJ 353 CG4396-PJ 1..353 1..356 1774 99.2 Plus
fne-PI 353 CG4396-PI 1..353 1..356 1774 99.2 Plus
fne-PD 353 CG4396-PD 1..353 1..356 1774 99.2 Plus
Rbp9-PH 439 CG3151-PH 95..439 10..356 1201 66.9 Plus
Rbp9-PG 439 CG3151-PG 95..439 10..356 1201 66.9 Plus
Rbp9-PF 439 CG3151-PF 95..439 10..356 1201 66.9 Plus
Rbp9-PE 439 CG3151-PE 95..439 10..356 1201 66.9 Plus
Rbp9-PJ 684 CG3151-PJ 95..439 10..356 1201 66.9 Plus
Rbp9-PK 444 CG3151-PK 95..444 10..356 1185 66 Plus
Rbp9-PI 444 CG3151-PI 95..444 10..356 1185 66 Plus
Rbp9-PB 444 CG3151-PB 95..444 10..356 1185 66 Plus
Rbp9-PC 444 CG3151-PC 95..444 10..356 1185 66 Plus
elav-PC 479 CG4262-PC 126..479 10..354 1009 60 Plus
elav-PB 479 CG4262-PB 126..479 10..354 1009 60 Plus
elav-PA 483 CG4262-PA 130..483 10..354 1009 60 Plus
elav-PD 483 CG4262-PD 130..483 10..354 1009 60 Plus
Sxl-PE 314 CG43770-PE 70..258 13..217 403 39.1 Plus
Sxl-PA 314 CG43770-PA 70..258 13..217 403 39.1 Plus
Sxl-PAB 322 CG43770-PAB 78..266 13..217 403 39.1 Plus
Sxl-PAC 331 CG43770-PAC 87..275 13..217 403 39.1 Plus
Sxl-PR 342 CG43770-PR 100..288 13..217 403 39.1 Plus
Sxl-PC 344 CG43770-PC 100..288 13..217 403 39.1 Plus
Sxl-PN 344 CG43770-PN 100..288 13..217 403 39.1 Plus
Sxl-PW 344 CG43770-PW 102..290 13..217 403 39.1 Plus
Sxl-PJ 346 CG43770-PJ 102..290 13..217 403 39.1 Plus
Sxl-PG 346 CG43770-PG 102..290 13..217 403 39.1 Plus
Sxl-PP 352 CG43770-PP 110..298 13..217 403 39.1 Plus
Sxl-PT 354 CG43770-PT 110..298 13..217 403 39.1 Plus
Sxl-PD 354 CG43770-PD 110..298 13..217 403 39.1 Plus
Sxl-PL 354 CG43770-PL 110..298 13..217 403 39.1 Plus
Sxl-PO 364 CG43770-PO 100..288 13..217 403 39.1 Plus
Sxl-PH 366 CG43770-PH 102..290 13..217 403 39.1 Plus
Sxl-PY 708 CG43770-PY 110..298 13..217 403 39.1 Plus
Sxl-PX 722 CG43770-PX 102..290 13..217 403 39.1 Plus
ssx-PE 443 CG3056-PE 91..267 24..218 396 41 Plus
ssx-PB 443 CG3056-PB 91..267 24..218 396 41 Plus
ssx-PD 485 CG3056-PD 91..267 24..218 396 41 Plus
CG5213-PA 251 CG5213-PA 36..214 21..217 291 32.5 Plus
shep-PA 578 CG32423-PA 201..388 1..209 252 30.8 Plus
shep-PF 590 CG32423-PF 213..400 1..209 252 30.8 Plus
shep-PH 371 CG32423-PH 4..187 14..209 251 32.8 Plus
shep-PI 377 CG32423-PI 4..187 14..209 251 32.8 Plus
shep-PE 379 CG32423-PE 4..189 14..209 248 32.2 Plus
shep-PG 379 CG32423-PG 4..189 14..209 248 32.2 Plus
shep-PB 499 CG32423-PB 106..302 1..209 247 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16282-PA 353 GI16282-PA 1..353 1..356 1842 98.9 Plus
Dmoj\GI11879-PA 724 GI11879-PA 121..447 23..345 1192 66.9 Plus
Dmoj\GI15436-PA 475 GI15436-PA 123..475 10..354 1058 59.6 Plus
Dmoj\GI21573-PA 367 GI21573-PA 104..292 15..219 415 39.1 Plus
Dmoj\GI16327-PA 716 GI16327-PA 248..422 24..219 379 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22975-PA 385 GL22975-PA 1..385 1..356 1729 88.7 Plus
Dper\GL26299-PA 678 GL26299-PA 107..428 23..345 1191 67.8 Plus
Dper\GL20165-PA 496 GL20165-PA 144..496 10..354 1049 59.6 Plus
Dper\GL26885-PA 377 GL26885-PA 125..302 24..219 407 38.8 Plus
Dper\GL14245-PA 618 GL14245-PA 118..295 24..219 407 42.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22283-PA 353 GA22283-PA 1..353 1..356 1842 98.9 Plus
Dpse\GA28809-PA 692 GA28809-PA 116..442 23..345 1178 66.9 Plus
Dpse\GA18065-PA 496 GA18065-PA 144..496 10..354 1049 59.6 Plus
Dpse\GA22715-PA 672 GA22715-PA 118..295 24..219 408 42.3 Plus
Dpse\GA22653-PA 377 GA22653-PA 125..302 24..219 407 38.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11591-PA 379 GM11591-PA 34..379 8..356 1804 98.9 Plus
Dsec\GM18380-PA 650 GM18380-PA 313..650 23..356 1215 67 Plus
Dsec\GM19036-PA 466 GM19036-PA 126..466 10..354 1042 59.3 Plus
Dsec\Sxl-PA 301 GM17480-PA 102..281 13..208 408 40.4 Plus
Dsec\GM19131-PA 488 GM19131-PA 91..268 24..219 404 40.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17091-PA 371 GD17091-PA 1..250 1..250 1289 98.8 Plus
Dsim\GD16475-PA 466 GD16475-PA 126..466 10..354 1042 59.3 Plus
Dsim\GD23195-PA 464 GD23195-PA 312..463 23..187 603 69.4 Plus
Dsim\Sxl-PA 301 GD16165-PA 102..255 13..182 350 40.7 Plus
Dsim\GD16553-PA 226 GD16553-PA 91..226 24..177 325 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16518-PA 353 GJ16518-PA 1..353 1..356 1848 99.2 Plus
Dvir\GJ13991-PA 725 GJ13991-PA 99..425 23..345 1184 66.9 Plus
Dvir\elav-PA 516 GJ14725-PA 164..516 10..354 1058 59.6 Plus
Dvir\Sxl-PA 368 GJ16698-PA 105..293 15..219 417 39.1 Plus
Dvir\ssx-PA 428 GJ15667-PA 26..192 35..219 352 38.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25647-PA 353 GK25647-PA 1..353 1..356 1848 99.2 Plus
Dwil\GK14865-PA 725 GK14865-PA 118..444 23..345 1182 66.9 Plus
Dwil\GK16120-PA 509 GK16120-PA 157..509 10..354 1059 59.9 Plus
Dwil\GK16696-PA 508 GK16696-PA 102..287 19..219 419 41.7 Plus
Dwil\GK16445-PA 373 GK16445-PA 106..296 13..219 414 38.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fne-PA 353 GE17033-PA 1..353 1..356 1848 99.2 Plus
Dyak\GE18193-PA 446 GE18193-PA 109..446 23..356 1213 67 Plus
Dyak\GE16581-PA 478 GE16581-PA 125..478 10..354 1053 60 Plus
Dyak\GE17544-PA 335 GE17544-PA 72..260 15..219 414 39.1 Plus
Dyak\GE16683-PA 563 GE16683-PA 111..288 24..219 403 40.8 Plus

RT06063.hyp Sequence

Translation from 1 to 1068

> RT06063.hyp
MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIG
ELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEK
AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMF
ASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYA
EPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRY
SPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQ
SVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKT
NKTKTT

RT06063.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
fne-PE 356 CG4396-PE 1..356 1..356 1804 100 Plus
fne-PH 356 CG4396-PH 1..356 1..356 1804 100 Plus
fne-PG 356 CG4396-PG 1..356 1..356 1804 100 Plus
fne-PB 356 CG4396-PB 1..356 1..356 1804 100 Plus
fne-PA 356 CG4396-PA 1..356 1..356 1804 100 Plus

RT06063.hyp2 Sequence

Translation from 1 to 1070

> RT06063.hyp2
MTNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIG
ELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNYVRAEDAEK
AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMF
ASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYA
EPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRY
SPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQ
SVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKT
NKTKTT*

RT06063.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
fne-PE 356 CG4396-PE 1..356 1..356 1804 100 Plus
fne-PH 356 CG4396-PH 1..356 1..356 1804 100 Plus
fne-PG 356 CG4396-PG 1..356 1..356 1804 100 Plus
fne-PB 356 CG4396-PB 1..356 1..356 1804 100 Plus
fne-PA 356 CG4396-PA 1..356 1..356 1804 100 Plus
fne-PC 356 CG4396-PC 1..356 1..356 1804 100 Plus
fne-PJ 353 CG4396-PJ 1..353 1..356 1774 99.2 Plus
fne-PI 353 CG4396-PI 1..353 1..356 1774 99.2 Plus
fne-PD 353 CG4396-PD 1..353 1..356 1774 99.2 Plus
Rbp9-PH 439 CG3151-PH 95..439 10..356 1201 66.9 Plus
Rbp9-PG 439 CG3151-PG 95..439 10..356 1201 66.9 Plus
Rbp9-PF 439 CG3151-PF 95..439 10..356 1201 66.9 Plus
Rbp9-PE 439 CG3151-PE 95..439 10..356 1201 66.9 Plus
Rbp9-PJ 684 CG3151-PJ 95..439 10..356 1201 66.9 Plus
Rbp9-PK 444 CG3151-PK 95..444 10..356 1185 66 Plus
Rbp9-PI 444 CG3151-PI 95..444 10..356 1185 66 Plus
Rbp9-PB 444 CG3151-PB 95..444 10..356 1185 66 Plus
Rbp9-PC 444 CG3151-PC 95..444 10..356 1185 66 Plus
elav-PC 479 CG4262-PC 126..479 10..354 1009 60 Plus
elav-PB 479 CG4262-PB 126..479 10..354 1009 60 Plus
elav-PA 483 CG4262-PA 130..483 10..354 1009 60 Plus
elav-PD 483 CG4262-PD 130..483 10..354 1009 60 Plus
Sxl-PE 314 CG43770-PE 70..258 13..217 403 39.1 Plus
Sxl-PA 314 CG43770-PA 70..258 13..217 403 39.1 Plus
Sxl-PAB 322 CG43770-PAB 78..266 13..217 403 39.1 Plus
Sxl-PAC 331 CG43770-PAC 87..275 13..217 403 39.1 Plus
Sxl-PR 342 CG43770-PR 100..288 13..217 403 39.1 Plus
Sxl-PC 344 CG43770-PC 100..288 13..217 403 39.1 Plus
Sxl-PN 344 CG43770-PN 100..288 13..217 403 39.1 Plus
Sxl-PW 344 CG43770-PW 102..290 13..217 403 39.1 Plus
Sxl-PJ 346 CG43770-PJ 102..290 13..217 403 39.1 Plus
Sxl-PG 346 CG43770-PG 102..290 13..217 403 39.1 Plus
Sxl-PP 352 CG43770-PP 110..298 13..217 403 39.1 Plus
Sxl-PT 354 CG43770-PT 110..298 13..217 403 39.1 Plus
Sxl-PD 354 CG43770-PD 110..298 13..217 403 39.1 Plus
Sxl-PL 354 CG43770-PL 110..298 13..217 403 39.1 Plus
Sxl-PO 364 CG43770-PO 100..288 13..217 403 39.1 Plus
Sxl-PH 366 CG43770-PH 102..290 13..217 403 39.1 Plus
Sxl-PY 708 CG43770-PY 110..298 13..217 403 39.1 Plus
Sxl-PX 722 CG43770-PX 102..290 13..217 403 39.1 Plus
ssx-PE 443 CG3056-PE 91..267 24..218 396 41 Plus
ssx-PB 443 CG3056-PB 91..267 24..218 396 41 Plus
ssx-PD 485 CG3056-PD 91..267 24..218 396 41 Plus
CG5213-PA 251 CG5213-PA 36..214 21..217 291 32.5 Plus
shep-PA 578 CG32423-PA 201..388 1..209 252 30.8 Plus
shep-PF 590 CG32423-PF 213..400 1..209 252 30.8 Plus
shep-PH 371 CG32423-PH 4..187 14..209 251 32.8 Plus
shep-PI 377 CG32423-PI 4..187 14..209 251 32.8 Plus
shep-PE 379 CG32423-PE 4..189 14..209 248 32.2 Plus
shep-PG 379 CG32423-PG 4..189 14..209 248 32.2 Plus
shep-PB 499 CG32423-PB 106..302 1..209 247 30.7 Plus