RT06119.complete Sequence
405 bp assembled on 2011-07-27
GenBank Submission: BT120382.2
> RT06119.complete
ATGAGTAACACTCGAACAGTACACAGCAGCACATCAATATCAAAGATGAA
TTCCGCACTGCAAATCAGCTGCCTTCTCGTTGTTCTTGGCTGCCTTTTGG
GTTCAGGACACTGCCAAAGTGAAGCTGAATTCGCGGCCAAGTCCCGAGAA
ATAGCCCAAGTATTCGGCAATCCCTCCGTCGATAAATACACGAAGGCTCG
CAATTTGCCCACGCTGATTGCCTTCTACGAGAAATACTCCAGTCGCCTAC
GATTGACACCTCAGGAAAGGATTAGTATCAATAATGCTATGAGGCAATAT
AAGGCACAACGAAACCAGCAAGTTGACGGAGTATCTGCCCAGGGAGGATG
GTTGTCTGACATTATCAAGACAGCAATTTCGATCATTGTAAAGGCCGTTG
AATGA
RT06119.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Victoria-RA | 659 | Victoria-RA | 44..447 | 1..404 | 2020 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 19911392..19911717 | 404..67 | 1415 | 95.3 | Minus |
chr2L | 23010047 | chr2L | 19911773..19911837 | 68..4 | 295 | 96.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19913055..19913393 | 405..67 | 1695 | 100 | Minus |
2L | 23513712 | 2L | 19913449..19913516 | 68..1 | 340 | 100 | Minus |
2L | 23513712 | 2L | 19912079..19912206 | 245..118 | 190 | 76.6 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19913055..19913393 | 405..67 | 1695 | 100 | Minus |
2L | 23513712 | 2L | 19913449..19913516 | 68..1 | 340 | 100 | Minus |
2L | 23513712 | 2L | 19912079..19912146 | 245..178 | 175 | 83.8 | Minus |
Blast to na_te.dros performed on 2019-03-15 10:50:44 has no hits.
RT06119.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:43 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 19911392..19911715 | 69..404 | 95 | <- | Minus |
chr2L | 19911773..19911840 | 1..68 | 95 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:37:33 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..404 | 1..404 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:30 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..405 | 1..405 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:35 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..405 | 1..405 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:21 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..405 | 1..405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:37:32 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..404 | 1..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:29 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..404 | 1..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:35 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..404 | 1..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:21 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Victoria-RA | 1..404 | 1..404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19913056..19913391 | 69..404 | 100 | <- | Minus |
2L | 19913449..19913516 | 1..68 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19913056..19913391 | 69..404 | 100 | <- | Minus |
2L | 19913449..19913516 | 1..68 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19913056..19913391 | 69..404 | 100 | <- | Minus |
2L | 19913449..19913516 | 1..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:35 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19913056..19913391 | 69..404 | 100 | <- | Minus |
arm_2L | 19913449..19913516 | 1..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:46 Download gff for
RT06119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19913056..19913391 | 69..404 | 100 | <- | Minus |
2L | 19913449..19913516 | 1..68 | 100 | | Minus |
RT06119.pep Sequence
Translation from 0 to 404
> RT06119.pep
MSNTRTVHSSTSISKMNSALQISCLLVVLGCLLGSGHCQSEAEFAAKSRE
IAQVFGNPSVDKYTKARNLPTLIAFYEKYSSRLRLTPQERISINNAMRQY
KAQRNQQVDGVSAQGGWLSDIIKTAISIIVKAVE*
RT06119.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG21584-PA | 130 | GG21584-PA | 1..119 | 16..134 | 407 | 74.8 | Plus |
Dere\GG25068-PA | 131 | GG25068-PA | 1..113 | 16..126 | 195 | 36.3 | Plus |
Dere\GG16504-PA | 152 | GG16504-PA | 2..107 | 19..122 | 151 | 31.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Victoria-PA | 134 | CG33117-PA | 1..134 | 1..134 | 668 | 100 | Plus |
TotF-PA | 125 | CG31691-PA | 1..100 | 16..116 | 284 | 57.4 | Plus |
TotM-PB | 131 | CG14027-PB | 1..113 | 16..126 | 204 | 38.1 | Plus |
TotM-PA | 131 | CG14027-PA | 1..113 | 16..126 | 204 | 38.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL24287-PA | 230 | GL24287-PA | 118..209 | 39..130 | 179 | 29.3 | Plus |
Dper\GL24288-PA | 157 | GL24288-PA | 1..123 | 16..134 | 166 | 32.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16081-PA | 137 | GA16081-PA | 4..116 | 18..130 | 221 | 31.9 | Plus |
Dpse\GA26557-PA | 157 | GA26557-PA | 1..123 | 16..134 | 166 | 32.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16980-PA | 134 | GM16980-PA | 1..134 | 1..134 | 578 | 91.8 | Plus |
Dsec\GM16981-PA | 117 | GM16981-PA | 1..100 | 16..116 | 318 | 59.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD21728-PA | 119 | GD21728-PA | 1..119 | 16..134 | 530 | 94.1 | Plus |
Dsim\GD21729-PA | 125 | GD21729-PA | 1..116 | 16..129 | 328 | 54.7 | Plus |
Dsim\GD23335-PA | 131 | GD23335-PA | 1..113 | 16..126 | 220 | 39.8 | Plus |
Dsim\GD20023-PA | 150 | GD20023-PA | 2..107 | 19..122 | 145 | 31.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE12623-PA | 134 | GE12623-PA | 1..122 | 1..122 | 441 | 79.5 | Plus |
Dyak\GE12622-PA | 128 | GE12622-PA | 1..117 | 16..132 | 408 | 76.9 | Plus |
Dyak\GE25388-PA | 131 | GE25388-PA | 1..113 | 16..126 | 195 | 36.3 | Plus |
Dyak\GE11142-PA | 150 | GE11142-PA | 3..107 | 20..122 | 144 | 29.5 | Plus |
RT06119.hyp Sequence
Translation from 1 to 402
> RT06119.hyp
MSNTRTVHSSTSISKMNSALQISCLLVVLGCLLGSGHCQSEAEFAAKSRE
IAQVFGNPSVDKYTKARNLPTLIAFYEKYSSRLRLTPQERISINNAMRQY
KAQRNQQVDGVSAQGGWLSDIIKTAISIIVKAVE
RT06119.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Victoria-PA | 134 | CG33117-PA | 1..134 | 1..134 | 668 | 100 | Plus |
TotF-PA | 125 | CG31691-PA | 1..100 | 16..116 | 284 | 57.4 | Plus |
TotM-PB | 131 | CG14027-PB | 1..113 | 16..126 | 204 | 38.1 | Plus |
TotM-PA | 131 | CG14027-PA | 1..113 | 16..126 | 204 | 38.1 | Plus |