Clone RT06119 Report

Search the DGRC for RT06119

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:61
Well:19
Vector:pCR2.1
Associated Gene/TranscriptVictoria-RA
Protein status:RT06119.pep: gold
Sequenced Size:405

Clone Sequence Records

RT06119.complete Sequence

405 bp assembled on 2011-07-27

GenBank Submission: BT120382.2

> RT06119.complete
ATGAGTAACACTCGAACAGTACACAGCAGCACATCAATATCAAAGATGAA
TTCCGCACTGCAAATCAGCTGCCTTCTCGTTGTTCTTGGCTGCCTTTTGG
GTTCAGGACACTGCCAAAGTGAAGCTGAATTCGCGGCCAAGTCCCGAGAA
ATAGCCCAAGTATTCGGCAATCCCTCCGTCGATAAATACACGAAGGCTCG
CAATTTGCCCACGCTGATTGCCTTCTACGAGAAATACTCCAGTCGCCTAC
GATTGACACCTCAGGAAAGGATTAGTATCAATAATGCTATGAGGCAATAT
AAGGCACAACGAAACCAGCAAGTTGACGGAGTATCTGCCCAGGGAGGATG
GTTGTCTGACATTATCAAGACAGCAATTTCGATCATTGTAAAGGCCGTTG
AATGA

RT06119.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Victoria-RA 659 Victoria-RA 44..447 1..404 2020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19911392..19911717 404..67 1415 95.3 Minus
chr2L 23010047 chr2L 19911773..19911837 68..4 295 96.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19913055..19913393 405..67 1695 100 Minus
2L 23513712 2L 19913449..19913516 68..1 340 100 Minus
2L 23513712 2L 19912079..19912206 245..118 190 76.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19913055..19913393 405..67 1695 100 Minus
2L 23513712 2L 19913449..19913516 68..1 340 100 Minus
2L 23513712 2L 19912079..19912146 245..178 175 83.8 Minus
Blast to na_te.dros performed on 2019-03-15 10:50:44 has no hits.

RT06119.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:43 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19911392..19911715 69..404 95 <- Minus
chr2L 19911773..19911840 1..68 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:37:33 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..404 1..404 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:30 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..405 1..405 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:35 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..405 1..405 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:21 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..405 1..405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:37:32 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..404 1..404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:29 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..404 1..404 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:35 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..404 1..404 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:21 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
Victoria-RA 1..404 1..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19913056..19913391 69..404 100 <- Minus
2L 19913449..19913516 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19913056..19913391 69..404 100 <- Minus
2L 19913449..19913516 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:43 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19913056..19913391 69..404 100 <- Minus
2L 19913449..19913516 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:35 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19913056..19913391 69..404 100 <- Minus
arm_2L 19913449..19913516 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:46 Download gff for RT06119.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19913056..19913391 69..404 100 <- Minus
2L 19913449..19913516 1..68 100   Minus

RT06119.pep Sequence

Translation from 0 to 404

> RT06119.pep
MSNTRTVHSSTSISKMNSALQISCLLVVLGCLLGSGHCQSEAEFAAKSRE
IAQVFGNPSVDKYTKARNLPTLIAFYEKYSSRLRLTPQERISINNAMRQY
KAQRNQQVDGVSAQGGWLSDIIKTAISIIVKAVE*

RT06119.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21584-PA 130 GG21584-PA 1..119 16..134 407 74.8 Plus
Dere\GG25068-PA 131 GG25068-PA 1..113 16..126 195 36.3 Plus
Dere\GG16504-PA 152 GG16504-PA 2..107 19..122 151 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Victoria-PA 134 CG33117-PA 1..134 1..134 668 100 Plus
TotF-PA 125 CG31691-PA 1..100 16..116 284 57.4 Plus
TotM-PB 131 CG14027-PB 1..113 16..126 204 38.1 Plus
TotM-PA 131 CG14027-PA 1..113 16..126 204 38.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24287-PA 230 GL24287-PA 118..209 39..130 179 29.3 Plus
Dper\GL24288-PA 157 GL24288-PA 1..123 16..134 166 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16081-PA 137 GA16081-PA 4..116 18..130 221 31.9 Plus
Dpse\GA26557-PA 157 GA26557-PA 1..123 16..134 166 32.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16980-PA 134 GM16980-PA 1..134 1..134 578 91.8 Plus
Dsec\GM16981-PA 117 GM16981-PA 1..100 16..116 318 59.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21728-PA 119 GD21728-PA 1..119 16..134 530 94.1 Plus
Dsim\GD21729-PA 125 GD21729-PA 1..116 16..129 328 54.7 Plus
Dsim\GD23335-PA 131 GD23335-PA 1..113 16..126 220 39.8 Plus
Dsim\GD20023-PA 150 GD20023-PA 2..107 19..122 145 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12623-PA 134 GE12623-PA 1..122 1..122 441 79.5 Plus
Dyak\GE12622-PA 128 GE12622-PA 1..117 16..132 408 76.9 Plus
Dyak\GE25388-PA 131 GE25388-PA 1..113 16..126 195 36.3 Plus
Dyak\GE11142-PA 150 GE11142-PA 3..107 20..122 144 29.5 Plus

RT06119.hyp Sequence

Translation from 1 to 402

> RT06119.hyp
MSNTRTVHSSTSISKMNSALQISCLLVVLGCLLGSGHCQSEAEFAAKSRE
IAQVFGNPSVDKYTKARNLPTLIAFYEKYSSRLRLTPQERISINNAMRQY
KAQRNQQVDGVSAQGGWLSDIIKTAISIIVKAVE

RT06119.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Victoria-PA 134 CG33117-PA 1..134 1..134 668 100 Plus
TotF-PA 125 CG31691-PA 1..100 16..116 284 57.4 Plus
TotM-PB 131 CG14027-PB 1..113 16..126 204 38.1 Plus
TotM-PA 131 CG14027-PA 1..113 16..126 204 38.1 Plus